Wall clock time and date at job start Tue Mar 31 2020 11:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52997 * 109.47056 * 119.99823 * 2 1 3 5 5 C 1.52994 * 109.46926 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47296 * 299.99773 * 5 4 2 7 7 C 1.53003 * 109.46461 * 60.00235 * 6 5 4 8 8 H 1.09002 * 109.47477 * 60.00253 * 7 6 5 9 9 O 1.45203 * 109.46793 * 179.97438 * 7 6 5 10 10 C 1.34232 * 117.00069 * 269.99790 * 9 7 6 11 11 O 1.20822 * 119.99871 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99783 * 180.02562 * 10 9 7 13 13 H 1.08999 * 109.47455 * 60.00286 * 12 10 9 14 14 C 1.50706 * 109.47148 * 299.99987 * 12 10 9 15 15 H 1.07993 * 120.00018 * 325.09880 * 14 12 10 16 16 C 1.37876 * 119.99911 * 145.09907 * 14 12 10 17 17 N 1.31509 * 120.00099 * 184.98031 * 16 14 12 18 18 Si 1.86802 * 119.99929 * 4.98424 * 16 14 12 19 19 H 1.48509 * 109.47160 * 84.67016 * 18 16 14 20 20 H 1.48493 * 109.47099 * 204.66676 * 18 16 14 21 21 H 1.48501 * 109.47316 * 324.67018 * 18 16 14 22 22 C 1.50701 * 109.47056 * 180.02562 * 12 10 9 23 23 C 1.38237 * 120.00150 * 65.01711 * 22 12 10 24 24 C 1.38235 * 119.99623 * 179.74936 * 23 22 12 25 25 C 1.38234 * 120.00489 * 0.52751 * 24 23 22 26 26 C 1.38245 * 119.99593 * 359.74608 * 25 24 23 27 27 C 1.38229 * 120.00018 * 359.97438 * 26 25 24 28 28 C 1.52994 * 109.47174 * 299.99840 * 7 6 5 29 29 H 1.09003 * 109.47096 * 299.99898 * 1 2 3 30 30 H 1.08996 * 109.47068 * 59.99762 * 1 2 3 31 31 H 1.08994 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47031 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46967 * 300.00574 * 3 2 1 34 34 H 1.09003 * 109.47274 * 59.99572 * 3 2 1 35 35 H 1.09006 * 109.46961 * 60.00232 * 4 2 1 36 36 H 1.09003 * 109.47396 * 300.00095 * 4 2 1 37 37 H 1.09005 * 109.47087 * 180.02562 * 5 4 2 38 38 H 1.08998 * 109.47649 * 60.00194 * 5 4 2 39 39 H 1.08999 * 109.47329 * 179.97438 * 6 5 4 40 40 H 1.08990 * 109.47322 * 300.00528 * 6 5 4 41 41 H 0.97004 * 120.00432 * 180.02562 * 17 16 14 42 42 H 1.07997 * 120.00182 * 0.02562 * 23 22 12 43 43 H 1.08006 * 119.99786 * 180.29792 * 24 23 22 44 44 H 1.08000 * 120.00404 * 179.77085 * 25 24 23 45 45 H 1.07998 * 119.99469 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.00136 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.47445 * 299.99786 * 28 7 6 48 48 H 1.09007 * 109.47352 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4435 -0.0003 7 6 3.5695 -0.7222 -1.2496 8 1 3.9332 0.3054 -1.2498 9 8 4.0535 -1.4067 -2.4351 10 6 5.2331 -1.0034 -2.9327 11 8 5.8413 -0.1085 -2.3952 12 6 5.7988 -1.6670 -4.1618 13 1 5.1056 -1.5422 -4.9937 14 6 6.0005 -3.1359 -3.8919 15 1 6.2996 -3.4682 -2.9089 16 6 5.8031 -4.0555 -4.9001 17 7 5.8831 -5.3423 -4.6411 18 14 5.4222 -3.4735 -6.6337 19 1 6.6907 -3.1695 -7.3438 20 1 4.6894 -4.5389 -7.3637 21 1 4.5839 -2.2492 -6.5720 22 6 7.1215 -1.0345 -4.5104 23 6 8.1950 -1.1573 -3.6480 24 6 9.4097 -0.5816 -3.9703 25 6 9.5480 0.1262 -5.1496 26 6 8.4729 0.2538 -6.0093 27 6 7.2599 -0.3268 -5.6898 28 6 2.0395 -0.7216 -1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 1.2492 36 1 1.6767 -0.2074 2.1393 37 1 3.9334 -1.2360 2.1387 38 1 3.9338 0.3057 1.2487 39 1 5.1695 -1.4435 -0.0008 40 1 3.7158 -2.4709 -0.0001 41 1 5.7446 -5.9894 -5.3505 42 1 8.0858 -1.7068 -2.7247 43 1 10.2497 -0.6816 -3.2988 44 1 10.4961 0.5791 -5.3996 45 1 8.5809 0.8071 -6.9304 46 1 6.4198 -0.2268 -6.3612 47 1 1.6758 -1.7491 -1.2491 48 1 1.6761 -0.2081 -2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596559254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:49 Heat of formation + Delta-G solvation = -91.369586 kcal Electronic energy + Delta-G solvation = -27367.075577 eV Core-core repulsion = 23771.619685 eV Total energy + Delta-G solvation = -3595.455892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.25889 -39.09247 -38.12020 -35.56033 -33.73202 -32.80818 -31.55939 -30.20193 -30.13315 -27.89685 -27.42570 -26.36151 -23.97525 -22.64030 -21.95777 -21.72525 -20.72857 -19.49493 -18.35139 -17.19540 -16.85671 -16.24810 -15.85723 -15.13900 -14.80128 -14.68821 -14.63064 -14.27484 -14.24137 -13.73352 -13.48199 -13.14779 -12.81042 -12.75267 -12.72896 -12.43492 -12.21775 -12.07105 -11.94159 -11.90652 -11.57390 -11.45983 -11.15161 -10.99077 -10.96593 -10.94209 -10.54928 -10.52687 -10.43653 -10.29153 -9.99600 -9.91243 -9.68830 -9.58159 -9.28235 -8.75816 -8.20487 -7.91196 -6.27984 -4.31819 2.06824 2.13818 3.13777 3.22690 3.25278 3.28320 3.49028 4.24442 4.54733 4.60527 4.67684 4.78582 5.01300 5.08856 5.15145 5.32759 5.35045 5.42274 5.47978 5.50325 5.54832 5.58640 5.61423 5.66391 5.68898 5.77275 5.87242 5.88893 5.89921 5.96991 6.01426 6.05397 6.18224 6.22258 6.24876 6.26563 6.31723 6.35624 6.40225 6.41470 6.56235 6.68613 6.78287 7.10836 7.18095 7.20584 7.30177 7.51034 7.73447 8.20950 8.65115 8.79487 9.28656 10.83211 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.004306 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.517442 B = 6500.758021 C = 7458.962766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.149 4.149 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.134 4.134 7 C 0.084 3.916 8 H 0.081 0.919 9 O -0.338 6.338 10 C 0.482 3.518 11 O -0.533 6.533 12 C 0.045 3.955 13 H 0.083 0.917 14 C -0.505 4.505 15 H 0.083 0.917 16 C 0.088 3.912 17 N -0.881 5.881 18 Si 0.866 3.134 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.035 4.035 23 C -0.073 4.073 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.105 4.105 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.269 0.731 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.075 0.925 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 10.607 6.561 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.172 4.172 7 C 0.029 3.971 8 H 0.098 0.902 9 O -0.254 6.254 10 C 0.327 3.673 11 O -0.422 6.422 12 C 0.025 3.975 13 H 0.101 0.899 14 C -0.542 4.542 15 H 0.101 0.899 16 C -0.117 4.117 17 N -0.516 5.516 18 Si 0.693 3.307 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.186 1.186 22 C -0.036 4.036 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.142 4.142 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.094 0.906 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.865 10.654 6.668 13.870 hybrid contribution -0.053 0.122 -0.919 0.929 sum -5.918 10.776 5.749 13.572 Atomic orbital electron populations 1.21842 0.94281 1.01900 1.01630 1.20493 0.95366 0.95468 0.94785 1.22023 1.01800 0.95222 1.01555 1.21642 0.95645 1.00595 0.96851 1.21528 0.95452 1.00932 0.97493 1.21904 1.01438 1.00321 0.93510 1.22620 0.93935 0.96938 0.83610 0.90158 1.86678 1.37181 1.59766 1.41772 1.24431 0.77995 0.79100 0.85739 1.90538 1.59633 1.30561 1.61503 1.18275 0.91120 0.96985 0.91101 0.89895 1.20394 1.48577 0.85369 0.99868 0.89924 1.24925 0.93548 0.94638 0.98614 1.69851 1.47679 1.00592 1.33488 0.87012 0.79635 0.78957 0.85114 1.19086 1.20864 1.18617 1.20054 0.96611 0.93170 0.93762 1.20857 0.91930 0.97221 0.99114 1.21036 0.97392 0.99078 0.97108 1.20895 0.98203 1.01261 0.95488 1.20895 0.93462 1.00911 0.99274 1.20976 0.97557 0.99013 0.97638 1.21636 0.93203 1.01806 0.97576 0.92670 0.92588 0.92478 0.91859 0.92669 0.92712 0.91644 0.91968 0.91677 0.91627 0.91344 0.90834 0.92051 0.86474 0.86969 0.87170 0.87071 0.87181 0.90621 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.47 37.16 0.31 -0.96 16 2 C -0.06 -0.66 0.77 -154.51 -0.12 -0.78 16 3 C -0.15 -1.57 7.78 37.16 0.29 -1.28 16 4 C -0.11 -1.15 4.73 -26.74 -0.13 -1.28 16 5 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 6 C -0.13 -2.08 5.56 -26.73 -0.15 -2.23 16 7 C 0.08 1.41 2.18 -26.73 -0.06 1.35 16 8 H 0.08 1.38 5.44 -51.93 -0.28 1.10 16 9 O -0.34 -7.14 9.80 -39.26 -0.38 -7.53 16 10 C 0.48 10.94 7.11 36.00 0.26 11.19 16 11 O -0.53 -12.31 14.59 -18.75 -0.27 -12.58 16 12 C 0.04 1.06 2.00 -94.07 -0.19 0.87 16 13 H 0.08 1.94 4.89 -51.93 -0.25 1.68 16 14 C -0.51 -13.53 8.20 -34.44 -0.28 -13.81 16 15 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 16 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 17 N -0.88 -25.50 13.96 55.43 0.77 -24.73 16 18 Si 0.87 20.40 27.18 -169.99 -4.62 15.78 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.26 -5.76 6.06 56.52 0.34 -5.42 16 22 C -0.04 -0.79 4.09 -104.62 -0.43 -1.22 16 23 C -0.07 -1.58 8.26 -39.58 -0.33 -1.90 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 25 C -0.14 -2.40 10.05 -39.58 -0.40 -2.79 16 26 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 27 C -0.13 -2.69 9.46 -39.58 -0.37 -3.07 16 28 C -0.10 -1.43 4.39 -26.74 -0.12 -1.55 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.12 2.60 7.92 -52.49 -0.42 2.18 16 43 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.11 2.05 7.95 -52.48 -0.42 1.63 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -29.57 375.75 -9.51 -39.08 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.91 Total: 6.43 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.75 Total: -22.11 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.77 Total: -24.73 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.66 Total: -20.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.62 Total: 15.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.57 -9.51 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596559254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.290 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds