Wall clock time and date at job start Tue Mar 31 2020 11:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46899 * 2 1 4 4 C 1.52998 * 109.47213 * 119.99924 * 2 1 3 5 5 C 1.52999 * 109.47126 * 60.00214 * 4 2 1 6 6 C 1.52994 * 109.47205 * 59.99649 * 5 4 2 7 7 C 1.52998 * 109.47365 * 300.00204 * 6 5 4 8 8 H 1.09005 * 109.47183 * 299.99670 * 7 6 5 9 9 O 1.45201 * 109.47452 * 179.97438 * 7 6 5 10 10 C 1.34236 * 116.99787 * 89.99836 * 9 7 6 11 11 O 1.20827 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99794 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.47747 * 59.99676 * 12 10 9 14 14 C 1.50704 * 109.47116 * 299.99616 * 12 10 9 15 15 H 1.08001 * 119.99943 * 325.10227 * 14 12 10 16 16 C 1.37881 * 119.99824 * 145.09585 * 14 12 10 17 17 N 1.31513 * 119.99515 * 184.98449 * 16 14 12 18 18 Si 1.86796 * 120.00081 * 4.99066 * 16 14 12 19 19 H 1.48496 * 109.47409 * 84.66448 * 18 16 14 20 20 H 1.48507 * 109.46726 * 204.66725 * 18 16 14 21 21 H 1.48497 * 109.47234 * 324.66452 * 18 16 14 22 22 C 1.50703 * 109.47028 * 180.02562 * 12 10 9 23 23 C 1.38234 * 119.99919 * 65.02114 * 22 12 10 24 24 C 1.38241 * 119.99503 * 179.81050 * 23 22 12 25 25 C 1.38235 * 120.00171 * 0.41777 * 24 23 22 26 26 C 1.38232 * 119.99738 * 359.81037 * 25 24 23 27 27 C 1.38234 * 120.00575 * 0.02562 * 26 25 24 28 28 C 1.52994 * 109.46924 * 240.00156 * 2 1 3 29 29 H 1.09006 * 109.46734 * 300.00201 * 1 2 3 30 30 H 1.08999 * 109.47083 * 59.99870 * 1 2 3 31 31 H 1.08998 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46921 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47359 * 299.99961 * 3 2 1 34 34 H 1.08997 * 109.47329 * 60.00390 * 3 2 1 35 35 H 1.08997 * 109.47353 * 299.99816 * 4 2 1 36 36 H 1.09006 * 109.47181 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.47359 * 180.02562 * 5 4 2 38 38 H 1.09006 * 109.46703 * 299.99819 * 5 4 2 39 39 H 1.09006 * 109.47152 * 60.00444 * 6 5 4 40 40 H 1.09006 * 109.47093 * 180.02562 * 6 5 4 41 41 H 0.97003 * 119.99469 * 180.02562 * 17 16 14 42 42 H 1.07993 * 120.00328 * 359.97438 * 23 22 12 43 43 H 1.07997 * 119.99657 * 180.20385 * 24 23 22 44 44 H 1.07995 * 120.00238 * 179.79230 * 25 24 23 45 45 H 1.08004 * 120.00033 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00286 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.47749 * 59.99875 * 28 2 1 48 48 H 1.09003 * 109.47419 * 179.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0400 -2.8849 0.0000 7 6 1.5300 -2.1637 -1.2492 8 1 0.4400 -2.1638 -1.2492 9 8 2.0145 -2.8478 -2.4348 10 6 1.2415 -3.8258 -2.9327 11 8 0.1945 -4.1008 -2.3958 12 6 1.6794 -4.5808 -4.1611 13 1 2.6324 -5.0723 -3.9651 14 6 1.8370 -3.6201 -5.3115 15 1 1.1734 -2.7729 -5.4024 16 6 2.8286 -3.8227 -6.2480 17 7 3.0296 -2.9333 -7.1957 18 14 3.8861 -5.3606 -6.1707 19 1 3.1910 -6.4747 -6.8640 20 1 5.1883 -5.0996 -6.8352 21 1 4.1198 -5.7298 -4.7515 22 6 0.6420 -5.6164 -4.5108 23 6 -0.6237 -5.2220 -4.9023 24 6 -1.5742 -6.1720 -5.2268 25 6 -1.2615 -7.5164 -5.1514 26 6 0.0028 -7.9108 -4.7553 27 6 0.9543 -6.9609 -4.4341 28 6 2.0400 -0.7212 -1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 -0.2074 2.1392 36 1 3.1301 -0.7216 1.2490 37 1 1.8931 -2.6774 2.1394 38 1 0.4400 -2.1637 1.2493 39 1 3.1301 -2.8850 0.0000 40 1 1.6763 -3.9125 -0.0002 41 1 3.7269 -3.0760 -7.8547 42 1 -0.8693 -4.1718 -4.9573 43 1 -2.5620 -5.8639 -5.5359 44 1 -2.0050 -8.2586 -5.4016 45 1 0.2470 -8.9612 -4.6959 46 1 1.9419 -7.2690 -4.1242 47 1 1.6767 -0.2074 -2.1392 48 1 3.1300 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596559255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:53 Heat of formation + Delta-G solvation = -91.435105 kcal Electronic energy + Delta-G solvation = -27362.279772 eV Core-core repulsion = 23766.821039 eV Total energy + Delta-G solvation = -3595.458733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.26124 -39.09148 -38.11885 -35.56080 -33.73459 -32.83260 -31.56092 -30.20150 -30.12852 -27.89728 -27.38212 -26.37132 -23.97682 -22.65543 -21.93814 -21.75945 -20.73197 -19.50812 -18.34197 -17.21924 -16.82125 -16.25621 -15.85098 -15.13596 -14.81395 -14.73565 -14.63059 -14.28085 -14.20746 -13.73349 -13.43538 -13.18520 -12.84137 -12.74153 -12.70080 -12.50660 -12.14791 -12.06409 -11.95051 -11.91022 -11.48501 -11.45515 -11.24551 -10.98573 -10.96106 -10.94310 -10.54531 -10.53280 -10.44456 -10.28412 -9.99579 -9.93121 -9.66197 -9.61353 -9.28612 -8.75821 -8.20475 -7.91319 -6.28182 -4.31993 2.06785 2.13779 3.13608 3.22543 3.25178 3.28234 3.49173 4.24346 4.54834 4.60942 4.67587 4.80404 5.01126 5.06833 5.12520 5.31551 5.33467 5.42472 5.48491 5.50601 5.55137 5.59708 5.63521 5.66282 5.69495 5.80204 5.88277 5.89871 5.91425 5.93864 6.03423 6.06120 6.18972 6.20367 6.21915 6.24939 6.29838 6.35213 6.39956 6.43417 6.53029 6.68349 6.78226 7.10805 7.18063 7.20461 7.29976 7.51006 7.73415 8.20817 8.64866 8.79327 9.28477 10.83027 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.004338 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.504724 B = 6453.120953 C = 7478.093363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.135 4.135 7 C 0.084 3.916 8 H 0.082 0.918 9 O -0.337 6.337 10 C 0.482 3.518 11 O -0.533 6.533 12 C 0.045 3.955 13 H 0.084 0.916 14 C -0.506 4.506 15 H 0.083 0.917 16 C 0.088 3.912 17 N -0.881 5.881 18 Si 0.866 3.134 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.035 4.035 23 C -0.073 4.073 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.104 4.104 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.269 0.731 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.073 0.927 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 1.352 13.345 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.173 4.173 7 C 0.028 3.972 8 H 0.100 0.900 9 O -0.254 6.254 10 C 0.327 3.673 11 O -0.422 6.422 12 C 0.025 3.975 13 H 0.101 0.899 14 C -0.543 4.543 15 H 0.101 0.899 16 C -0.117 4.117 17 N -0.516 5.516 18 Si 0.693 3.307 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.186 1.186 22 C -0.036 4.036 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.142 4.142 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.092 0.908 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.648 1.370 13.342 13.671 hybrid contribution 0.533 -0.800 -0.147 0.972 sum -2.116 0.570 13.195 13.375 Atomic orbital electron populations 1.22026 0.94613 1.02326 1.01662 1.20497 0.95794 0.95170 0.94663 1.21840 1.01066 0.95040 1.01727 1.21640 1.00725 0.95288 0.97044 1.21517 1.01215 0.95461 0.97190 1.21935 1.01619 0.99713 0.94009 1.22624 0.99871 0.91538 0.83125 0.89958 1.86683 1.49961 1.46953 1.41758 1.24435 0.81573 0.77243 0.84005 1.90540 1.24798 1.66090 1.60807 1.18275 0.95429 0.93036 0.90739 0.89881 1.20402 1.17609 1.09880 1.06375 0.89928 1.24929 0.96031 0.95967 0.94810 1.69856 1.32267 1.33970 1.15504 0.87007 0.80416 0.84276 0.78997 1.19082 1.20855 1.18622 1.20053 0.94624 0.93240 0.95677 1.20860 0.92556 0.99322 0.96399 1.21037 0.99073 0.93213 1.01284 1.20891 0.96571 0.95762 1.02618 1.20895 0.93922 0.98488 1.01242 1.20976 0.99127 0.92876 1.02208 1.21626 1.01735 0.93026 0.97798 0.92771 0.92458 0.91936 0.92539 0.92405 0.92715 0.91945 0.91753 0.91765 0.91490 0.91158 0.91570 0.92050 0.86464 0.86963 0.87169 0.87072 0.87185 0.90784 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.78 37.16 0.29 -1.37 16 2 C -0.06 -0.68 0.77 -154.51 -0.12 -0.80 16 3 C -0.14 -1.36 8.47 37.16 0.31 -1.04 16 4 C -0.11 -1.12 4.73 -26.73 -0.13 -1.24 16 5 C -0.12 -1.31 5.65 -26.73 -0.15 -1.46 16 6 C -0.14 -1.94 5.56 -26.74 -0.15 -2.09 16 7 C 0.08 1.40 2.18 -26.73 -0.06 1.34 16 8 H 0.08 1.46 5.45 -51.93 -0.28 1.17 16 9 O -0.34 -7.14 9.80 -39.27 -0.38 -7.52 16 10 C 0.48 10.95 7.11 36.00 0.26 11.20 16 11 O -0.53 -12.31 14.59 -18.75 -0.27 -12.58 16 12 C 0.04 1.06 2.00 -94.07 -0.19 0.87 16 13 H 0.08 1.94 4.89 -51.93 -0.25 1.69 16 14 C -0.51 -13.57 8.19 -34.44 -0.28 -13.85 16 15 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 16 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 17 N -0.88 -25.50 13.96 55.43 0.77 -24.72 16 18 Si 0.87 20.41 27.18 -169.99 -4.62 15.79 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.26 -5.77 6.06 56.52 0.34 -5.42 16 22 C -0.04 -0.79 4.09 -104.62 -0.43 -1.22 16 23 C -0.07 -1.58 8.26 -39.58 -0.33 -1.91 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.14 -2.40 10.05 -39.58 -0.40 -2.79 16 26 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 27 C -0.13 -2.70 9.46 -39.58 -0.37 -3.07 16 28 C -0.10 -1.49 4.39 -26.73 -0.12 -1.61 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.12 2.60 7.92 -52.49 -0.42 2.19 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 46 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -29.58 375.75 -9.51 -39.09 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.91 Total: 6.43 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.75 Total: -22.14 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.77 Total: -24.72 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.66 Total: -20.11 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.62 Total: 15.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.58 -9.51 -39.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596559255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.349 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds