Wall clock time and date at job start Tue Mar 31 2020 11:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 C 1.53000 * 109.46859 * 239.99776 * 2 1 3 5 5 C 1.53002 * 109.46867 * 120.00067 * 2 1 3 6 6 N 1.46502 * 109.47002 * 59.99802 * 5 2 1 7 7 C 1.46496 * 120.00006 * 269.99545 * 6 5 2 8 8 C 1.50705 * 109.46970 * 270.00313 * 7 6 5 9 9 H 1.07991 * 120.00212 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99599 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00147 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 119.99996 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46979 * 60.00533 * 12 10 8 14 14 H 1.48498 * 109.47278 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47293 * 300.00808 * 12 10 8 16 16 C 1.38991 * 119.99972 * 89.99979 * 6 5 2 17 17 C 1.39212 * 119.64521 * 4.97675 * 16 6 5 18 18 C 1.38404 * 119.29615 * 180.02562 * 17 16 6 19 19 C 1.38667 * 118.58960 * 359.97438 * 18 17 16 20 20 C 1.39085 * 119.24360 * 0.02562 * 19 18 17 21 21 C 1.48427 * 119.67951 * 180.02562 * 20 19 18 22 22 N 1.34061 * 126.67876 * 359.97438 * 21 20 19 23 23 N 1.28986 * 107.26881 * 180.02562 * 22 21 20 24 24 N 1.28734 * 108.94654 * 0.02562 * 23 22 21 25 25 H 0.96996 * 125.33752 * 179.97438 * 24 23 22 26 26 N 1.28868 * 109.32175 * 359.72532 * 24 23 22 27 27 N 1.32270 * 119.64667 * 184.99604 * 16 6 5 28 28 H 1.09000 * 109.46785 * 300.00157 * 1 2 3 29 29 H 1.08995 * 109.47304 * 59.99633 * 1 2 3 30 30 H 1.08993 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47034 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46892 * 299.99875 * 3 2 1 33 33 H 1.09000 * 109.47381 * 60.00208 * 3 2 1 34 34 H 1.09006 * 109.47394 * 300.00416 * 4 2 1 35 35 H 1.09005 * 109.46772 * 60.00100 * 4 2 1 36 36 H 1.09004 * 109.47216 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47236 * 299.99501 * 5 2 1 38 38 H 1.09004 * 109.46672 * 179.97438 * 5 2 1 39 39 H 1.09000 * 109.47284 * 29.99983 * 7 6 5 40 40 H 1.09003 * 109.47213 * 150.00199 * 7 6 5 41 41 H 0.97006 * 120.00065 * 179.97438 * 11 10 8 42 42 H 1.08005 * 120.35222 * 359.97438 * 17 16 6 43 43 H 1.07993 * 120.70355 * 179.97438 * 18 17 16 44 44 H 1.08006 * 120.37193 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.5516 -2.1025 1.2492 7 6 0.2715 -2.4268 1.8836 8 6 0.5025 -2.7748 3.3316 9 1 1.5025 -2.7559 3.7387 10 6 -0.5633 -3.1164 4.1369 11 7 -1.7813 -3.1389 3.6413 12 14 -0.2771 -3.5485 5.9316 13 1 0.3413 -2.3911 6.6268 14 1 -1.5747 -3.8771 6.5746 15 1 0.6297 -4.7211 6.0199 16 6 2.3027 -3.1052 0.6474 17 6 3.5644 -2.8093 0.1388 18 6 4.3059 -3.8132 -0.4595 19 6 3.7623 -5.0869 -0.5312 20 6 2.4960 -5.3159 -0.0035 21 6 1.9051 -6.6756 -0.0744 22 7 2.4689 -7.7667 -0.6119 23 7 1.6325 -8.7385 -0.4716 24 7 0.5795 -8.3007 0.1259 25 1 -0.1998 -8.8326 0.3510 26 7 0.7255 -7.0464 0.3828 27 7 1.8109 -4.3302 0.5636 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.6767 -0.2074 2.1393 38 1 3.1300 -0.7217 1.2490 39 1 -0.3946 -1.5664 1.8185 40 1 -0.1818 -3.2767 1.3735 41 1 -2.5311 -3.3796 4.2078 42 1 3.9600 -1.8069 0.2097 43 1 5.2869 -3.6089 -0.8620 44 1 4.3157 -5.8916 -0.9923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603074524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:06 Heat of formation + Delta-G solvation = 167.307783 kcal Electronic energy + Delta-G solvation = -27034.791632 eV Core-core repulsion = 23411.597992 eV Total energy + Delta-G solvation = -3623.193640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.19197 -39.95614 -37.82183 -34.71178 -34.04258 -33.25947 -32.43418 -31.61444 -29.78503 -27.70764 -27.04458 -26.75583 -25.30880 -24.66243 -24.16574 -22.88699 -21.51653 -20.62546 -19.01593 -18.40231 -16.94765 -16.89009 -16.48902 -16.00425 -15.24631 -14.89323 -14.71673 -14.49803 -14.16604 -13.70552 -13.55074 -13.38214 -12.98694 -12.65810 -12.36572 -12.25012 -12.06669 -11.93864 -11.59609 -11.31797 -11.30053 -11.19257 -11.11833 -11.03013 -10.83493 -10.80308 -10.72527 -10.50092 -10.35081 -10.15216 -10.06242 -9.76145 -9.28540 -8.81554 -8.69228 -8.35969 -6.75225 -5.96431 -4.02426 1.08592 1.43749 2.00650 2.47585 2.69851 3.32003 3.36132 3.39447 3.56729 4.02029 4.42654 4.47679 4.51966 5.04660 5.08865 5.17038 5.28295 5.34290 5.36787 5.54221 5.61699 5.67451 5.76032 5.78706 5.81055 5.85779 5.99231 6.01301 6.04599 6.14907 6.20467 6.30914 6.37443 6.42620 6.45941 6.58690 6.64751 6.69307 6.76712 6.92394 7.19334 7.55177 7.86644 7.98736 8.30841 8.33172 8.39237 8.81979 9.02918 9.61061 11.08073 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.008399 B = 0.006171 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.767762 B = 4536.595991 C = 6934.512474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.136 3.864 6 N -0.580 5.580 7 C 0.250 3.750 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.064 3.936 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.279 1.279 16 C 0.428 3.572 17 C -0.239 4.239 18 C -0.040 4.040 19 C -0.213 4.213 20 C 0.244 3.756 21 C 0.225 3.775 22 N -0.264 5.264 23 N -0.064 5.064 24 N -0.233 5.233 25 H 0.474 0.526 26 N -0.246 5.246 27 N -0.495 5.495 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.050 0.950 41 H 0.261 0.739 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 0.575 -9.739 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.011 3.989 6 N -0.286 5.286 7 C 0.131 3.869 8 C -0.560 4.560 9 H 0.071 0.929 10 C -0.138 4.138 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.205 1.205 16 C 0.190 3.810 17 C -0.266 4.266 18 C -0.066 4.066 19 C -0.240 4.240 20 C 0.102 3.898 21 C -0.056 4.056 22 N -0.139 5.139 23 N -0.059 5.059 24 N -0.079 5.079 25 H 0.328 0.672 26 N -0.098 5.098 27 N -0.213 5.213 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.594 -0.070 -9.365 11.454 hybrid contribution 0.288 -0.060 1.135 1.172 sum 6.883 -0.130 -8.230 10.729 Atomic orbital electron populations 1.21941 0.94034 1.03020 1.00750 1.21053 0.96786 0.94961 0.96153 1.21802 1.00519 0.95484 1.01666 1.21963 1.00339 1.00797 0.96394 1.21475 0.98179 0.81970 0.97281 1.47072 1.22694 1.03378 1.55485 1.19422 0.78266 0.97331 0.91924 1.21438 0.93403 1.46171 0.95000 0.92883 1.24858 0.95064 0.95538 0.98322 1.69918 0.98562 1.48794 1.36008 0.86678 0.77241 0.78903 0.85254 1.20382 1.21304 1.20466 1.18140 0.87640 0.86741 0.88526 1.21629 0.95780 1.01127 1.08070 1.21054 0.98602 0.91735 0.95199 1.21412 0.96486 0.98421 1.07659 1.17324 0.90257 0.86609 0.95652 1.23403 0.88523 0.95208 0.98450 1.76000 1.22354 0.96244 1.19254 1.78821 0.92970 1.22200 1.11918 1.47887 1.16634 1.06393 1.36998 0.67205 1.75404 1.19926 0.94769 1.19653 1.67027 1.35968 0.99109 1.19206 0.92587 0.93785 0.91259 0.92918 0.92837 0.92563 0.92277 0.93522 0.92813 0.89955 0.91650 0.94631 0.93228 0.92897 0.85078 0.85188 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.23 37.16 0.27 -1.92 16 2 C -0.09 -1.22 0.84 -154.51 -0.13 -1.35 16 3 C -0.14 -1.53 8.47 37.16 0.31 -1.21 16 4 C -0.14 -1.85 6.97 37.16 0.26 -1.59 16 5 C 0.14 2.19 4.53 -4.04 -0.02 2.17 16 6 N -0.58 -11.66 2.07 -175.22 -0.36 -12.02 16 7 C 0.25 6.20 4.13 -5.19 -0.02 6.17 16 8 C -0.52 -14.37 9.39 -34.44 -0.32 -14.69 16 9 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 10 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 11 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 12 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.43 8.38 5.86 -155.11 -0.91 7.47 16 17 C -0.24 -3.72 7.33 -39.16 -0.29 -4.01 16 18 C -0.04 -0.56 10.16 -39.36 -0.40 -0.96 16 19 C -0.21 -3.32 9.73 -39.11 -0.38 -3.71 16 20 C 0.24 4.63 6.75 -82.96 -0.56 4.07 16 21 C 0.23 4.15 8.03 -156.29 -1.26 2.90 16 22 N -0.26 -4.40 12.20 32.15 0.39 -4.01 16 23 N -0.06 -0.94 13.47 60.35 0.81 -0.13 16 24 N -0.23 -3.14 7.90 60.35 0.48 -2.67 16 25 H 0.47 4.01 8.96 -340.37 -3.05 0.96 16 26 N -0.25 -4.48 12.38 32.17 0.40 -4.08 16 27 N -0.50 -10.68 9.00 -8.97 -0.08 -10.76 16 28 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.28 5.99 -51.93 -0.31 0.97 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.95 6.10 -51.93 -0.32 0.63 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.64 6.67 -51.93 -0.35 0.29 16 37 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 38 H 0.07 0.93 5.97 -51.93 -0.31 0.62 16 39 H 0.04 0.90 6.05 -51.93 -0.31 0.59 16 40 H 0.05 1.39 7.30 -51.93 -0.38 1.02 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 1.75 4.93 -52.48 -0.26 1.49 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.13 1.82 7.87 -52.48 -0.41 1.41 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -32.50 356.91 -9.43 -41.93 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.62 Total: -0.23 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.54 Total: -4.95 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 2.37 Total: -58.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.50 -9.43 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603074524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.238 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds