Wall clock time and date at job start Tue Mar 31 2020 11:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 119.44033 * 2 1 4 4 C 1.38600 * 119.44727 * 179.97438 * 3 2 1 5 5 C 1.39472 * 118.39596 * 359.97438 * 4 3 2 6 6 C 1.48359 * 120.56289 * 179.97438 * 5 4 3 7 7 N 1.34079 * 126.67945 * 179.68682 * 6 5 4 8 8 N 1.28977 * 107.26834 * 179.83829 * 7 6 5 9 9 N 1.28730 * 108.95117 * 0.43376 * 8 7 6 10 10 H 0.97007 * 125.33341 * 179.76387 * 9 8 7 11 11 N 1.28867 * 109.32831 * 359.72444 * 9 8 7 12 12 C 1.40146 * 118.86707 * 359.97438 * 5 4 3 13 13 N 1.38785 * 119.78581 * 179.97438 * 12 5 4 14 14 C 1.46500 * 120.00060 * 179.97438 * 13 12 5 15 15 C 1.53002 * 109.47223 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47136 * 300.00120 * 15 14 13 17 17 C 1.53003 * 109.46944 * 59.99860 * 15 14 13 18 18 C 1.53001 * 109.47291 * 180.02562 * 15 14 13 19 19 C 1.50693 * 109.47078 * 180.02562 * 18 15 14 20 20 H 1.07999 * 120.00206 * 0.02562 * 19 18 15 21 21 C 1.37879 * 120.00154 * 179.97438 * 19 18 15 22 22 N 1.31516 * 119.99455 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00308 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47281 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47400 * 120.00119 * 23 21 19 26 26 H 1.48502 * 109.47227 * 240.00105 * 23 21 19 27 27 N 1.31957 * 119.44310 * 179.72557 * 2 1 3 28 28 H 1.09002 * 109.47152 * 90.00079 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00180 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00161 * 1 2 3 31 31 H 1.08002 * 120.27809 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.79975 * 179.97438 * 4 3 2 33 33 H 0.97005 * 120.00032 * 359.97438 * 13 12 5 34 34 H 1.08999 * 109.47216 * 300.00166 * 14 13 12 35 35 H 1.09002 * 109.46910 * 60.00168 * 14 13 12 36 36 H 1.09002 * 109.47418 * 59.99944 * 16 15 14 37 37 H 1.08999 * 109.47218 * 179.97438 * 16 15 14 38 38 H 1.09002 * 109.47029 * 300.00134 * 16 15 14 39 39 H 1.08999 * 109.47145 * 60.00331 * 17 15 14 40 40 H 1.09007 * 109.46596 * 180.02562 * 17 15 14 41 41 H 1.09002 * 109.47230 * 299.99823 * 17 15 14 42 42 H 1.09003 * 109.46725 * 300.00206 * 18 15 14 43 43 H 1.09002 * 109.46994 * 59.99792 * 18 15 14 44 44 H 0.97010 * 119.99789 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2033 0.0000 4 6 3.5722 1.2035 0.0005 5 6 4.2356 -0.0234 0.0016 6 6 5.7181 -0.0793 0.0017 7 7 6.4779 -1.1840 0.0085 8 7 7.7097 -0.8015 0.0023 9 7 7.7479 0.4852 0.0012 10 1 8.5556 1.0225 0.0003 11 7 6.5451 0.9477 0.0008 12 6 3.4779 -1.2023 0.0027 13 7 4.1184 -2.4335 0.0032 14 6 3.3309 -3.6689 0.0049 15 6 4.2731 -4.8743 0.0058 16 6 5.1550 -4.8333 -1.2439 17 6 5.1560 -4.8306 1.2546 18 6 3.4507 -6.1645 0.0069 19 6 4.3788 -7.3518 0.0084 20 1 5.4482 -7.2012 0.0090 21 6 3.8626 -8.6303 0.0101 22 7 2.5603 -8.8136 0.0099 23 14 5.0130 -10.1020 0.0128 24 1 6.4209 -9.6298 0.0120 25 1 4.7658 -10.9214 1.2264 26 1 4.7668 -10.9249 -1.1986 27 7 2.1557 -1.1491 0.0055 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6416 2.1360 -0.0004 32 1 4.1250 2.1312 0.0001 33 1 5.0875 -2.4761 0.0025 34 1 2.7030 -3.6983 0.8953 35 1 2.7016 -3.6998 -0.8847 36 1 5.7409 -3.9142 -1.2451 37 1 5.8266 -5.6919 -1.2430 38 1 4.5260 -4.8644 -2.1336 39 1 4.5278 -4.8598 2.1449 40 1 5.8276 -5.6892 1.2550 41 1 5.7419 -3.9114 1.2534 42 1 2.8222 -6.1939 0.8969 43 1 2.8221 -6.1954 -0.8831 44 1 2.1971 -9.7131 0.0115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605777972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:04 Heat of formation + Delta-G solvation = 148.883653 kcal Electronic energy + Delta-G solvation = -26401.307835 eV Core-core repulsion = 22777.315265 eV Total energy + Delta-G solvation = -3623.992571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.56750 -40.30424 -37.60021 -35.16555 -34.17233 -34.04970 -32.30518 -31.90670 -30.60864 -28.01161 -26.91654 -26.34234 -25.86326 -24.72312 -23.72076 -23.05301 -21.80086 -21.57533 -19.47557 -18.04880 -17.26063 -17.03710 -16.46023 -16.32894 -16.04285 -14.87368 -14.67523 -14.50478 -14.16976 -13.87224 -13.68609 -13.21074 -12.92355 -12.90813 -12.64847 -12.45332 -12.29540 -12.12760 -11.98351 -11.94282 -11.54479 -11.25143 -11.22502 -11.04697 -10.92356 -10.74830 -10.53177 -10.27374 -10.12548 -10.08204 -9.67960 -9.44102 -9.27670 -9.06238 -8.81978 -8.29133 -7.43178 -5.93426 -3.93514 0.63663 1.06641 1.53443 2.10082 2.26852 3.34925 3.35557 3.42813 3.46473 3.75465 3.91356 4.04698 4.44314 4.52355 4.74789 5.03017 5.18767 5.27897 5.40048 5.42513 5.48614 5.55976 5.60363 5.68598 5.77692 5.92057 5.96800 6.02286 6.14847 6.24294 6.37215 6.38220 6.43602 6.57172 6.57368 6.78972 6.80733 7.19955 7.20273 7.22774 7.46949 7.68454 7.73054 7.86181 8.01533 8.06583 8.46855 8.50043 9.11563 9.69120 11.18194 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.003665 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.836397 B = 7637.666199 C = 9456.835722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.207 3.793 3 C -0.256 4.256 4 C 0.015 3.985 5 C -0.173 4.173 6 C 0.247 3.753 7 N -0.288 5.288 8 N -0.039 5.039 9 N -0.229 5.229 10 H 0.474 0.526 11 N -0.307 5.307 12 C 0.452 3.548 13 N -0.694 5.694 14 C 0.133 3.867 15 C -0.072 4.072 16 C -0.128 4.128 17 C -0.128 4.128 18 C 0.037 3.963 19 C -0.507 4.507 20 H 0.060 0.940 21 C 0.055 3.945 22 N -0.896 5.896 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.286 1.286 27 N -0.539 5.539 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.423 0.577 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 24.220 -0.055 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.064 3.936 3 C -0.279 4.279 4 C -0.012 4.012 5 C -0.185 4.185 6 C -0.032 4.032 7 N -0.162 5.162 8 N -0.034 5.034 9 N -0.075 5.075 10 H 0.328 0.672 11 N -0.159 5.159 12 C 0.209 3.791 13 N -0.329 5.329 14 C 0.010 3.990 15 C -0.072 4.072 16 C -0.185 4.185 17 C -0.185 4.185 18 C 0.000 4.000 19 C -0.546 4.546 20 H 0.078 0.922 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.212 1.212 27 N -0.258 5.258 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.271 0.729 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.752 22.724 -0.043 23.032 hybrid contribution 1.548 0.416 -0.015 1.603 sum 5.300 23.140 -0.058 23.739 Atomic orbital electron populations 1.20800 0.88763 1.03673 1.03342 1.21176 0.96687 0.87554 0.88155 1.21446 0.93897 0.99029 1.13549 1.21229 0.94149 0.96060 0.89772 1.17403 0.84927 0.94379 1.21756 1.23426 0.95794 0.84274 0.99677 1.75489 0.95472 1.25411 1.19789 1.78901 1.15514 0.94899 1.14068 1.47659 1.08153 1.05342 1.46319 0.67155 1.74892 0.90562 1.26469 1.23927 1.18337 0.88004 0.85647 0.87109 1.45804 1.10875 1.02161 1.74066 1.21649 0.93843 0.81869 1.01645 1.20896 0.95761 0.95433 0.95142 1.21762 0.99404 1.00275 0.97091 1.21762 0.99400 1.00283 0.97091 1.19083 0.94534 0.89016 0.97377 1.21255 0.93099 0.90526 1.49676 0.92194 1.25002 0.94877 0.98957 0.95682 1.69982 1.10793 1.21462 1.51308 0.86612 0.81261 0.83131 0.77455 1.19785 1.21181 1.21187 1.67272 1.06609 1.29339 1.22628 0.90002 0.90535 0.90065 0.84796 0.84461 0.72929 0.91860 0.91861 0.94858 0.91557 0.93601 0.93600 0.91560 0.94837 0.96374 0.96369 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.16 36.01 0.37 -0.60 16 2 C 0.21 2.53 6.78 -82.56 -0.56 1.97 16 3 C -0.26 -2.65 9.71 -39.47 -0.38 -3.03 16 4 C 0.02 0.17 9.83 -38.99 -0.38 -0.21 16 5 C -0.17 -2.43 5.91 -104.56 -0.62 -3.05 16 6 C 0.25 3.42 7.91 -156.29 -1.24 2.19 16 7 N -0.29 -4.28 9.49 32.14 0.30 -3.97 16 8 N -0.04 -0.47 13.47 60.35 0.81 0.34 16 9 N -0.23 -2.01 7.90 60.35 0.48 -1.53 16 10 H 0.47 1.68 8.96 -340.36 -3.05 -1.37 16 11 N -0.31 -3.42 12.15 32.16 0.39 -3.03 16 12 C 0.45 7.31 7.49 -154.91 -1.16 6.14 16 13 N -0.69 -12.03 5.04 -60.22 -0.30 -12.33 16 14 C 0.13 2.53 4.58 -4.04 -0.02 2.52 16 15 C -0.07 -1.49 0.54 -154.50 -0.08 -1.57 16 16 C -0.13 -2.54 8.05 37.16 0.30 -2.25 16 17 C -0.13 -2.55 8.05 37.16 0.30 -2.25 16 18 C 0.04 0.95 4.04 -27.89 -0.11 0.84 16 19 C -0.51 -13.92 7.65 -34.44 -0.26 -14.19 16 20 H 0.06 1.60 5.68 -52.49 -0.30 1.31 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 23 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 N -0.54 -8.45 9.46 -8.45 -0.08 -8.53 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.14 1.22 7.96 -52.49 -0.42 0.81 16 33 H 0.42 7.27 2.72 -40.82 -0.11 7.16 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.60 6.86 -51.93 -0.36 0.24 16 37 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.39 6.62 -51.92 -0.34 1.04 16 41 H 0.03 0.60 6.86 -51.93 -0.36 0.25 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -33.03 359.66 -9.85 -42.88 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.64 Total: 2.17 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.95 Total: -12.01 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 2.34 Total: -55.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.03 -9.85 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605777972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.765 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds