Wall clock time and date at job start Tue Mar 31 2020 11:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99567 * 2 1 4 4 C 1.50699 * 109.47134 * 66.04955 * 3 2 1 5 5 H 1.08001 * 120.00209 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00151 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99572 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00032 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47240 * 90.00594 * 8 6 4 10 10 H 1.48500 * 109.47003 * 210.00199 * 8 6 4 11 11 H 1.48497 * 109.47565 * 330.00302 * 8 6 4 12 12 C 1.38786 * 111.00269 * 236.04942 * 2 1 3 13 13 N 1.32333 * 119.78901 * 59.78987 * 12 2 1 14 14 C 1.31949 * 121.74392 * 180.02562 * 13 12 2 15 15 C 1.50700 * 119.44114 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47454 * 255.00456 * 15 14 13 17 17 C 1.53000 * 109.47403 * 134.99828 * 15 14 13 18 18 C 1.53006 * 109.47024 * 15.00014 * 15 14 13 19 19 C 1.38169 * 121.11713 * 0.26034 * 14 13 12 20 20 C 1.38599 * 119.45040 * 359.47286 * 19 14 13 21 21 C 1.39474 * 118.39170 * 0.50802 * 20 19 14 22 22 C 1.48358 * 120.56084 * 179.77387 * 21 20 19 23 23 N 1.34079 * 126.67811 * 185.28125 * 22 21 20 24 24 N 1.28981 * 107.26918 * 179.83545 * 23 22 21 25 25 N 1.28732 * 108.95168 * 0.43879 * 24 23 22 26 26 H 0.97000 * 125.34089 * 179.71754 * 25 24 23 27 27 N 1.28877 * 109.32367 * 359.72334 * 25 24 23 28 28 H 1.09003 * 109.46782 * 187.57793 * 1 2 3 29 29 H 1.08997 * 109.47288 * 307.57806 * 1 2 3 30 30 H 1.08994 * 109.47032 * 67.57921 * 1 2 3 31 31 H 1.09004 * 109.46940 * 186.04134 * 3 2 1 32 32 H 1.08992 * 109.47542 * 306.04583 * 3 2 1 33 33 H 0.97005 * 119.99573 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46799 * 300.00000 * 16 15 14 35 35 H 1.09000 * 109.47235 * 59.99773 * 16 15 14 36 36 H 1.09001 * 109.46996 * 179.97438 * 16 15 14 37 37 H 1.08996 * 109.46986 * 180.02562 * 17 15 14 38 38 H 1.08994 * 109.47310 * 300.00508 * 17 15 14 39 39 H 1.09000 * 109.46630 * 60.00135 * 17 15 14 40 40 H 1.08997 * 109.47547 * 300.00453 * 18 15 14 41 41 H 1.09004 * 109.46829 * 60.00016 * 18 15 14 42 42 H 1.09001 * 109.47363 * 179.97438 * 18 15 14 43 43 H 1.08002 * 120.27501 * 179.74053 * 19 14 13 44 44 H 1.07999 * 120.80474 * 180.26734 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5115 2.0485 6 6 2.0275 3.3492 1.5290 7 7 2.7126 4.0017 0.6154 8 14 1.5825 4.1869 3.1382 9 1 2.6587 3.9500 4.1337 10 1 1.4310 5.6466 2.9110 11 1 0.3042 3.6302 3.6492 12 6 1.9664 -0.7236 -1.0748 13 7 1.6626 -0.3588 -2.3100 14 6 2.1137 -1.0189 -3.3597 15 6 1.7345 -0.5581 -4.7435 16 6 0.6815 -1.5035 -5.3252 17 6 2.9744 -0.5620 -5.6400 18 6 1.1626 0.8591 -4.6703 19 6 2.9230 -2.1288 -3.2114 20 6 3.2760 -2.5498 -1.9389 21 6 2.7871 -1.8361 -0.8449 22 6 3.1305 -2.2474 0.5386 23 7 2.6538 -1.7163 1.6736 24 7 3.1966 -2.3561 2.6532 25 7 3.9921 -3.2503 2.1790 26 1 4.5259 -3.8637 2.7078 27 7 3.9682 -3.2025 0.8913 28 1 -0.3633 -1.0187 0.1355 29 1 -0.3634 0.6267 0.8144 30 1 -0.3633 0.3919 -0.9499 31 1 3.0797 1.3445 -0.1082 32 1 1.5611 1.9274 -0.8308 33 1 2.9878 4.9176 0.7777 34 1 1.0890 -2.5131 -5.3774 35 1 -0.2018 -1.5007 -4.6866 36 1 0.4070 -1.1699 -6.3260 37 1 2.7002 -0.2283 -6.6407 38 1 3.7245 0.1115 -5.2256 39 1 3.3818 -1.5716 -5.6921 40 1 0.2793 0.8620 -4.0316 41 1 1.9127 1.5327 -4.2559 42 1 0.8887 1.1926 -5.6713 43 1 3.2812 -2.6615 -4.0800 44 1 3.9109 -3.4119 -1.7978 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609274520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:10 Heat of formation + Delta-G solvation = 169.589372 kcal Electronic energy + Delta-G solvation = -27096.951727 eV Core-core repulsion = 23473.857023 eV Total energy + Delta-G solvation = -3623.094703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.95867 -40.43796 -37.34309 -35.49493 -33.90766 -33.28853 -32.48400 -31.41102 -29.52475 -27.32246 -27.23125 -27.00081 -25.19818 -24.77593 -23.95806 -22.62150 -21.83677 -20.58375 -19.17885 -18.90159 -16.67982 -16.60303 -16.26550 -16.05813 -15.50163 -14.86099 -14.48890 -14.25650 -13.88059 -13.70648 -13.59901 -13.23051 -12.86478 -12.74768 -12.54310 -12.15619 -12.00198 -11.89146 -11.64368 -11.56347 -11.27712 -11.05853 -11.01237 -10.86115 -10.80670 -10.77258 -10.64111 -10.59854 -10.55418 -10.43375 -9.94579 -9.41828 -9.31336 -9.01854 -8.35750 -8.22654 -7.39856 -5.93010 -3.92650 0.89627 1.49429 1.64125 2.59532 2.81833 3.40183 3.45338 3.50020 3.99900 4.06901 4.33820 4.50188 4.61954 4.66341 4.80022 5.06290 5.18889 5.20066 5.35758 5.43026 5.58165 5.58493 5.66318 5.74117 5.76867 5.80937 5.93927 5.94900 6.03319 6.07230 6.14278 6.23673 6.29830 6.34338 6.38819 6.51344 6.66793 6.72343 6.74942 6.85022 7.35473 7.46053 7.91888 8.08221 8.21521 8.34935 8.63988 8.68620 9.14495 9.69752 11.18180 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.005652 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.309795 B = 4952.838065 C = 7177.158709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.479 5.479 3 C 0.209 3.791 4 C -0.498 4.498 5 H 0.068 0.932 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.273 1.273 12 C 0.364 3.636 13 N -0.499 5.499 14 C 0.168 3.832 15 C -0.022 4.022 16 C -0.135 4.135 17 C -0.140 4.140 18 C -0.128 4.128 19 C -0.194 4.194 20 C -0.035 4.035 21 C -0.063 4.063 22 C 0.232 3.768 23 N -0.194 5.194 24 N -0.067 5.067 25 N -0.244 5.244 26 H 0.468 0.532 27 N -0.313 5.313 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.022 0.978 32 H 0.007 0.993 33 H 0.259 0.741 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.135 0.865 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -15.951 -9.214 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.202 5.202 3 C 0.085 3.915 4 C -0.536 4.536 5 H 0.087 0.913 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.197 1.197 12 C 0.133 3.867 13 N -0.211 5.211 14 C 0.027 3.973 15 C -0.023 4.023 16 C -0.192 4.192 17 C -0.197 4.197 18 C -0.185 4.185 19 C -0.214 4.214 20 C -0.063 4.063 21 C -0.071 4.071 22 C -0.048 4.048 23 N -0.066 5.066 24 N -0.062 5.062 25 N -0.087 5.087 26 H 0.320 0.680 27 N -0.166 5.166 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.153 0.847 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.775 -15.199 -8.218 17.296 hybrid contribution 0.741 -0.190 0.246 0.803 sum 1.516 -15.389 -7.972 17.398 Atomic orbital electron populations 1.22161 0.86298 1.00128 1.01424 1.60467 1.08502 1.18957 1.32290 1.19707 0.94887 0.79410 0.97453 1.21133 1.34523 0.96587 1.01385 0.91347 1.24960 0.95468 0.97315 0.96884 1.69982 1.38671 1.11400 1.33968 0.86493 0.78913 0.78249 0.83717 1.20802 1.21508 1.19734 1.20365 0.89100 0.89408 0.87846 1.67961 1.23988 1.30252 0.98860 1.21140 0.91480 0.90440 0.94210 1.19543 0.96106 0.97109 0.89501 1.21850 0.98266 0.98456 1.00662 1.21933 0.96782 1.02034 0.98984 1.21674 1.02185 0.93968 1.00684 1.21678 1.02624 0.99717 0.97384 1.21442 0.95917 0.97944 0.91038 1.17972 1.03533 0.98435 0.87125 1.23177 0.94379 0.91825 0.95396 1.76694 1.18140 1.17183 0.94617 1.79092 1.03478 0.99674 1.23989 1.47685 1.31218 1.26571 1.03231 0.67956 1.74789 1.22841 1.23152 0.95782 0.93961 0.89715 0.95336 0.96021 0.97462 0.93096 0.92565 0.92335 0.91990 0.91976 0.92200 0.92346 0.91511 0.92162 0.93241 0.84675 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 9.35 60.07 0.56 1.54 16 2 N -0.48 -10.96 2.97 -182.19 -0.54 -11.50 16 3 C 0.21 5.66 4.52 -4.97 -0.02 5.64 16 4 C -0.50 -14.28 8.41 -34.44 -0.29 -14.57 16 5 H 0.07 1.95 7.15 -52.49 -0.38 1.58 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 8 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 12 C 0.36 7.45 5.30 -154.91 -0.82 6.63 16 13 N -0.50 -9.50 8.26 -8.45 -0.07 -9.57 16 14 C 0.17 2.57 5.56 -82.57 -0.46 2.11 16 15 C -0.02 -0.27 0.87 -155.66 -0.14 -0.40 16 16 C -0.13 -1.37 8.40 37.16 0.31 -1.06 16 17 C -0.14 -1.42 8.09 37.16 0.30 -1.12 16 18 C -0.13 -1.78 7.80 37.16 0.29 -1.49 16 19 C -0.19 -2.55 9.04 -39.47 -0.36 -2.90 16 20 C -0.04 -0.51 9.83 -38.99 -0.38 -0.89 16 21 C -0.06 -1.15 5.91 -104.56 -0.62 -1.77 16 22 C 0.23 4.28 7.90 -156.29 -1.23 3.04 16 23 N -0.19 -3.96 10.99 32.14 0.35 -3.60 16 24 N -0.07 -1.14 13.47 60.35 0.81 -0.32 16 25 N -0.24 -3.15 7.90 60.35 0.48 -2.67 16 26 H 0.47 3.43 8.96 -340.36 -3.05 0.38 16 27 N -0.31 -4.73 12.17 32.16 0.39 -4.34 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.84 6.68 -51.93 -0.35 1.50 16 30 H 0.03 0.58 7.73 -51.93 -0.40 0.18 16 31 H 0.02 0.65 8.06 -51.93 -0.42 0.23 16 32 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.50 6.69 -51.93 -0.35 0.15 16 40 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.14 1.32 6.71 -52.49 -0.35 0.96 16 44 H 0.14 1.63 7.97 -52.49 -0.42 1.22 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -34.12 365.60 -9.36 -43.48 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -9.05 Total: -3.82 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.95 Total: -3.77 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 2.16 Total: -58.69 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.12 -9.36 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609274520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.071 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds