Wall clock time and date at job start Tue Mar 31 2020 11:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31820 * 119.65346 * 2 1 4 4 C 1.32440 * 121.74810 * 179.97438 * 3 2 1 5 5 N 1.38910 * 119.58083 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00079 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47121 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.46943 * 299.99299 * 7 6 5 9 9 C 1.52995 * 109.47470 * 59.99672 * 7 6 5 10 10 C 1.53007 * 109.47100 * 179.97438 * 7 6 5 11 11 C 1.50701 * 109.47153 * 179.97438 * 10 7 6 12 12 H 1.07997 * 119.99915 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00017 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99957 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00185 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47020 * 89.99401 * 15 13 11 17 17 H 1.48500 * 109.46880 * 209.99620 * 15 13 11 18 18 H 1.48498 * 109.46553 * 329.99436 * 15 13 11 19 19 C 1.39232 * 120.83916 * 0.05265 * 4 3 2 20 20 C 1.38064 * 119.22119 * 359.97284 * 19 4 3 21 21 C 1.39126 * 119.65689 * 180.02562 * 2 1 3 22 22 C 1.48429 * 120.44696 * 0.25638 * 21 2 1 23 23 N 1.34057 * 126.67727 * 359.40616 * 22 21 2 24 24 N 1.28994 * 107.26314 * 179.83682 * 23 22 21 25 25 N 1.28729 * 108.94720 * 0.43557 * 24 23 22 26 26 H 0.97005 * 125.33315 * 179.72569 * 25 24 23 27 27 N 1.28864 * 109.32409 * 359.72331 * 25 24 23 28 28 H 1.08997 * 109.47663 * 269.95551 * 1 2 3 29 29 H 1.09000 * 109.47123 * 29.95940 * 1 2 3 30 30 H 1.09009 * 109.47151 * 149.95486 * 1 2 3 31 31 H 0.96996 * 120.00222 * 0.02562 * 5 4 3 32 32 H 1.09001 * 109.46651 * 299.99747 * 6 5 4 33 33 H 1.08996 * 109.47571 * 59.99457 * 6 5 4 34 34 H 1.09005 * 109.47378 * 60.00671 * 8 7 6 35 35 H 1.09001 * 109.47418 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47657 * 299.99868 * 8 7 6 37 37 H 1.09001 * 109.47221 * 59.99812 * 9 7 6 38 38 H 1.09001 * 109.47606 * 180.02562 * 9 7 6 39 39 H 1.08996 * 109.47239 * 300.00246 * 9 7 6 40 40 H 1.09001 * 109.46928 * 299.99781 * 10 7 6 41 41 H 1.09004 * 109.47168 * 59.99787 * 10 7 6 42 42 H 0.96999 * 120.00157 * 180.02562 * 14 13 11 43 43 H 1.08007 * 120.39468 * 179.97438 * 19 4 3 44 44 H 1.08001 * 120.80331 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1591 1.1456 0.0000 4 6 3.4826 1.1940 0.0005 5 7 4.1237 2.4263 0.0010 6 6 5.5873 2.4905 0.0010 7 6 6.0335 3.9540 0.0023 8 6 5.4925 4.6532 -1.2464 9 6 5.4924 4.6512 1.2521 10 6 7.5621 4.0211 0.0029 11 6 8.0017 5.4626 0.0035 12 1 7.2645 6.2519 0.0031 13 6 9.3448 5.7738 0.0036 14 7 10.2425 4.8126 0.0037 15 14 9.8897 7.5606 0.0051 16 1 10.0341 8.0328 1.4056 17 1 11.1938 7.6809 -0.6949 18 1 8.8742 8.3882 -0.6942 19 6 4.2396 0.0254 0.0000 20 6 3.5947 -1.1954 -0.0006 21 6 2.1953 -1.2090 -0.0005 22 6 1.4555 -2.4958 -0.0068 23 7 0.1244 -2.6541 -0.0013 24 7 -0.1103 -3.9225 -0.0135 25 7 1.0108 -4.5550 -0.0171 26 1 1.1106 -5.5199 -0.0221 27 7 1.9798 -3.7054 -0.0131 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3634 -0.8896 -0.5146 31 1 3.6024 3.2442 0.0014 32 1 5.9728 1.9928 0.8908 33 1 5.9729 1.9935 -0.8891 34 1 4.4035 4.6055 -1.2465 35 1 5.8107 5.6957 -1.2458 36 1 5.8780 4.1566 -2.1368 37 1 5.8779 4.1530 2.1416 38 1 5.8099 5.6939 1.2527 39 1 4.4035 4.6033 1.2521 40 1 7.9473 3.5231 0.8927 41 1 7.9480 3.5243 -0.8873 42 1 11.1875 5.0314 0.0041 43 1 5.3186 0.0732 0.0000 44 1 4.1566 -2.1177 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609453018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:09 Heat of formation + Delta-G solvation = 150.377893 kcal Electronic energy + Delta-G solvation = -25421.083399 eV Core-core repulsion = 21797.155624 eV Total energy + Delta-G solvation = -3623.927776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.58625 -40.35732 -37.88570 -35.30176 -34.30908 -33.65689 -32.64159 -32.17074 -30.57658 -27.59528 -27.06963 -26.54029 -26.22142 -24.82904 -23.94038 -22.91519 -22.34739 -21.13967 -19.44718 -18.33422 -17.30099 -17.20817 -16.72636 -16.34530 -15.91997 -14.95255 -14.70052 -14.59131 -14.15240 -14.05268 -13.96514 -13.33412 -12.97221 -12.88252 -12.82956 -12.65899 -12.18842 -12.14366 -12.09026 -11.95496 -11.61902 -11.43031 -11.16758 -11.04740 -10.92270 -10.88271 -10.68040 -10.47993 -10.29340 -9.99277 -9.77515 -9.49658 -9.46352 -9.27971 -8.99325 -8.40642 -7.55012 -6.05174 -4.06171 0.68736 1.08052 1.32451 2.07435 2.31673 3.21700 3.28383 3.35633 3.37918 3.63819 3.89086 4.06855 4.41633 4.51940 4.77443 5.01050 5.17360 5.25830 5.30691 5.32319 5.41572 5.49444 5.61708 5.68001 5.70689 5.76909 5.98508 6.06103 6.10669 6.12177 6.19496 6.21399 6.29075 6.32689 6.51888 6.59911 6.61261 6.97202 7.02579 7.03660 7.14572 7.55832 7.67985 7.68140 7.93226 8.00478 8.20506 8.35482 8.98276 9.57398 11.06259 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.035740 B = 0.002230 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.244917 B =12552.231940 C =13133.805412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.232 3.768 3 N -0.551 5.551 4 C 0.432 3.568 5 N -0.703 5.703 6 C 0.129 3.871 7 C -0.070 4.070 8 C -0.129 4.129 9 C -0.128 4.128 10 C 0.036 3.964 11 C -0.511 4.511 12 H 0.060 0.940 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.250 4.250 20 C 0.011 3.989 21 C -0.162 4.162 22 C 0.250 3.750 23 N -0.276 5.276 24 N -0.057 5.057 25 N -0.230 5.230 26 H 0.473 0.527 27 N -0.307 5.307 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.406 0.594 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.260 0.740 43 H 0.141 0.859 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.164 -16.331 -0.083 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 N -0.270 5.270 4 C 0.193 3.807 5 N -0.332 5.332 6 C 0.006 3.994 7 C -0.070 4.070 8 C -0.186 4.186 9 C -0.186 4.186 10 C -0.001 4.001 11 C -0.549 4.549 12 H 0.078 0.922 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.275 4.275 20 C -0.016 4.016 21 C -0.171 4.171 22 C -0.029 4.029 23 N -0.149 5.149 24 N -0.051 5.051 25 N -0.076 5.076 26 H 0.327 0.673 27 N -0.159 5.159 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.244 0.756 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.158 0.842 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.703 -15.923 -0.087 23.811 hybrid contribution 1.373 0.098 0.044 1.377 sum -16.331 -15.825 -0.043 22.740 Atomic orbital electron populations 1.21167 0.88045 1.04682 1.03767 1.20969 0.96635 0.85790 0.87711 1.67137 1.07650 1.28862 1.23348 1.18613 0.88052 0.86924 0.87128 1.45048 1.07162 1.04512 1.76438 1.21811 0.76885 0.99525 1.01203 1.20882 1.00318 0.90502 0.95347 1.21770 0.97618 1.02124 0.97073 1.21769 0.97625 1.02116 0.97070 1.19101 0.86002 0.97576 0.97424 1.21168 0.91420 0.92053 1.50286 0.92224 1.25006 0.96989 0.97003 0.95490 1.69954 1.00998 1.31613 1.50887 0.86639 0.78096 0.85478 0.78065 1.20750 1.21331 1.19915 1.21375 1.01435 0.91168 1.13529 1.21234 0.92147 0.98217 0.89978 1.17643 0.92630 0.87615 1.19222 1.23416 0.87902 0.92013 0.99600 1.76094 1.13919 1.05623 1.19249 1.78887 1.11117 1.00548 1.14593 1.47657 1.01221 1.12295 1.46406 0.67323 1.74945 1.17598 0.99728 1.23607 0.90121 0.90722 0.87704 0.75618 0.91793 0.91782 0.94988 0.91365 0.93362 0.93359 0.91374 0.94993 0.96326 0.96320 0.93024 0.84154 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.36 36.00 0.34 -0.96 16 2 C 0.23 3.05 6.81 -82.27 -0.56 2.49 16 3 N -0.55 -7.99 10.29 -8.43 -0.09 -8.08 16 4 C 0.43 6.18 7.64 -155.04 -1.19 5.00 16 5 N -0.70 -10.02 5.13 -60.41 -0.31 -10.33 16 6 C 0.13 1.98 3.77 -4.04 -0.02 1.97 16 7 C -0.07 -1.25 0.54 -154.51 -0.08 -1.34 16 8 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 9 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 10 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 11 C -0.51 -13.18 7.65 -34.44 -0.26 -13.44 16 12 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 15 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 C -0.25 -3.23 9.31 -39.28 -0.37 -3.59 16 20 C 0.01 0.13 9.82 -39.01 -0.38 -0.25 16 21 C -0.16 -2.03 5.89 -104.73 -0.62 -2.64 16 22 C 0.25 2.93 7.79 -156.29 -1.22 1.71 16 23 N -0.28 -3.16 9.09 32.15 0.29 -2.87 16 24 N -0.06 -0.54 13.47 60.35 0.81 0.27 16 25 N -0.23 -1.66 7.90 60.35 0.48 -1.18 16 26 H 0.47 1.08 8.96 -340.36 -3.05 -1.97 16 27 N -0.31 -3.08 12.15 32.17 0.39 -2.69 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.13 5.13 -51.92 -0.27 0.87 16 31 H 0.41 5.73 6.28 -40.82 -0.26 5.47 16 32 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 33 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 34 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 35 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 39 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.14 1.68 6.68 -52.48 -0.35 1.33 16 44 H 0.14 1.38 7.96 -52.49 -0.42 0.96 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -30.42 357.02 -9.83 -40.24 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.53 Total: 1.08 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.97 Total: -12.72 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 2.31 Total: -49.82 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.42 -9.83 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609453018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.623 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds