Wall clock time and date at job start Tue Mar 31 2020 11:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.53002 * 109.46819 * 119.99832 * 2 1 3 5 5 N 1.46898 * 109.46648 * 173.80986 * 4 2 1 6 6 C 1.46899 * 110.99911 * 201.48155 * 5 4 2 7 7 C 1.50696 * 109.47103 * 71.85798 * 6 5 4 8 8 H 1.07999 * 120.00373 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00092 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99784 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47340 * 59.99958 * 11 9 7 13 13 H 1.48496 * 109.47082 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47165 * 299.99851 * 11 9 7 15 15 C 1.38388 * 111.00351 * 77.53106 * 5 4 2 16 16 N 1.31473 * 126.43385 * 32.30880 * 15 5 4 17 17 N 1.28430 * 110.50669 * 179.73826 * 16 15 5 18 18 N 1.28912 * 110.31472 * 0.02562 * 17 16 15 19 19 N 1.35302 * 126.44023 * 212.00414 * 15 5 4 20 20 C 1.46495 * 127.38187 * 0.23605 * 19 15 5 21 21 C 1.50702 * 109.47129 * 95.26841 * 20 19 15 22 22 C 1.38666 * 120.41993 * 90.00065 * 21 20 19 23 23 C 1.38632 * 118.41793 * 180.02562 * 22 21 20 24 24 C 1.38227 * 119.16518 * 0.02562 * 23 22 21 25 25 N 1.31856 * 120.75769 * 359.97438 * 24 23 22 26 26 C 1.31888 * 121.73075 * 359.70955 * 25 24 23 27 27 H 1.09004 * 109.46892 * 300.00448 * 1 2 3 28 28 H 1.08999 * 109.46716 * 60.00096 * 1 2 3 29 29 H 1.08994 * 109.46796 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47156 * 240.00179 * 2 1 3 31 31 H 1.08995 * 109.47315 * 67.46379 * 3 2 1 32 32 H 1.08999 * 109.47117 * 187.46676 * 3 2 1 33 33 H 1.08998 * 109.47260 * 307.46508 * 3 2 1 34 34 H 1.08996 * 109.47257 * 53.81097 * 4 2 1 35 35 H 1.09005 * 109.47061 * 293.80543 * 4 2 1 36 36 H 1.08999 * 109.47545 * 191.85875 * 6 5 4 37 37 H 1.08999 * 109.47065 * 311.85712 * 6 5 4 38 38 H 0.96999 * 119.99579 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.47259 * 215.26347 * 20 19 15 40 40 H 1.09001 * 109.47362 * 335.26174 * 20 19 15 41 41 H 1.07996 * 120.79147 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.41892 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.62154 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.62110 * 180.30991 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5014 -0.8519 1.1769 6 6 3.9764 -1.9381 2.0444 7 6 3.5937 -3.2655 1.4425 8 1 3.0521 -3.2991 0.5087 9 6 3.9349 -4.4374 2.0839 10 7 4.5948 -4.3967 3.2208 11 14 3.4611 -6.0829 1.3374 12 1 4.0822 -6.2147 -0.0050 13 1 3.9411 -7.1809 2.2144 14 1 1.9837 -6.1612 1.2091 15 6 4.1225 0.3434 1.4938 16 7 3.6878 1.2482 2.3430 17 7 4.5065 2.2357 2.4065 18 7 5.5065 2.0395 1.6169 19 7 5.2941 0.7980 0.9923 20 6 6.1566 0.1379 0.0092 21 6 5.8370 0.6577 -1.3687 22 6 6.5043 1.7631 -1.8743 23 6 6.1770 2.2064 -3.1465 24 6 5.2031 1.5369 -3.8633 25 7 4.5890 0.4888 -3.3504 26 6 4.8789 0.0356 -2.1462 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.7898 1.9163 0.9491 32 1 3.1218 1.4454 -0.1335 33 1 1.5718 1.9934 -0.8157 34 1 1.5890 -1.7119 1.3065 35 1 1.7700 -0.1473 2.1358 36 1 5.0608 -1.8807 2.1379 37 1 3.5212 -1.8413 3.0301 38 1 4.8351 -5.2211 3.6719 39 1 7.2004 0.3469 0.2433 40 1 5.9857 -0.9382 0.0404 41 1 7.2603 2.2673 -1.2907 42 1 6.6768 3.0640 -3.5721 43 1 4.9421 1.8762 -4.8549 44 1 4.3581 -0.8288 -1.7615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646301752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:22 Heat of formation + Delta-G solvation = 159.251044 kcal Electronic energy + Delta-G solvation = -27636.693278 eV Core-core repulsion = 24013.150271 eV Total energy + Delta-G solvation = -3623.543007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.57535 -40.22219 -37.93253 -35.48744 -34.34991 -32.80999 -32.44944 -31.54678 -30.72363 -27.67127 -27.06576 -26.81600 -25.38062 -23.71208 -23.33948 -22.62079 -21.86678 -20.71633 -19.59547 -17.50154 -16.98147 -16.78569 -16.42256 -16.26891 -15.81720 -15.21260 -14.83592 -14.29933 -14.09974 -13.88034 -13.81470 -13.51834 -13.42116 -13.17276 -12.66369 -12.51224 -12.37011 -12.09175 -12.04663 -11.86589 -11.72728 -11.39111 -11.07976 -10.97607 -10.84351 -10.63777 -10.39841 -10.29302 -10.27046 -10.17616 -9.95402 -9.78896 -9.48451 -9.37109 -9.20416 -8.68718 -8.05710 -6.27088 -4.32530 0.82573 1.15839 1.48385 2.25854 2.78488 3.21034 3.26808 3.28334 3.72255 4.09429 4.28329 4.32864 4.47919 4.62736 4.75990 4.85696 4.96638 5.08720 5.10568 5.20172 5.27171 5.34120 5.36065 5.48272 5.63830 5.82020 5.85752 5.86749 5.94779 5.99263 6.02997 6.07608 6.13220 6.19735 6.26562 6.35154 6.45501 6.57007 6.58035 6.67823 6.82755 6.93381 7.42276 7.48367 7.77967 7.87573 8.06543 8.73619 8.97890 9.33648 10.83122 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.010934 B = 0.005112 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.118188 B = 5476.528742 C = 5819.921553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.069 3.931 5 N -0.464 5.464 6 C 0.204 3.796 7 C -0.519 4.519 8 H 0.071 0.929 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.903 3.097 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.454 3.546 16 N -0.368 5.368 17 N -0.041 5.041 18 N -0.107 5.107 19 N -0.379 5.379 20 C 0.175 3.825 21 C -0.166 4.166 22 C -0.048 4.048 23 C -0.182 4.182 24 C 0.105 3.895 25 N -0.484 5.484 26 C 0.136 3.864 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.015 0.985 38 H 0.266 0.734 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 9.450 -10.989 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.058 4.058 5 N -0.190 5.190 6 C 0.081 3.919 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.140 4.140 10 N -0.529 5.529 11 Si 0.730 3.270 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.199 1.199 15 C 0.089 3.911 16 N -0.226 5.226 17 N -0.037 5.037 18 N -0.093 5.093 19 N -0.177 5.177 20 C 0.053 3.947 21 C -0.169 4.169 22 C -0.075 4.075 23 C -0.202 4.202 24 C -0.052 4.052 25 N -0.193 5.193 26 C -0.022 4.022 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.895 9.953 -11.101 14.937 hybrid contribution 0.625 -1.032 0.293 1.242 sum 1.521 8.922 -10.809 14.097 Atomic orbital electron populations 1.21748 0.95017 1.01825 1.01344 1.21146 0.95345 0.95614 0.98998 1.21972 0.99892 0.96665 1.01516 1.22305 0.83859 1.02457 0.97160 1.59361 1.07594 0.98505 1.53559 1.19976 0.95953 0.85944 0.90059 1.20939 1.37766 0.88760 1.08321 0.91095 1.24969 0.94798 0.99524 0.94744 1.69944 1.38477 1.28551 1.15957 0.86470 0.79084 0.82378 0.79025 1.19970 1.21253 1.19941 1.23492 0.84827 0.94572 0.88166 1.74914 1.25545 1.02103 1.20069 1.77789 0.97056 1.16956 1.11926 1.82401 1.19678 0.96634 1.10629 1.51402 1.18512 1.15382 1.32447 1.20668 0.94111 0.98295 0.81673 1.20922 1.00322 0.98667 0.96969 1.21557 0.97339 0.93648 0.94958 1.22117 1.00357 1.01995 0.95720 1.22869 0.91777 0.90984 0.99599 1.67818 1.25751 1.12708 1.12982 1.23005 0.92228 0.98061 0.88867 0.92779 0.93022 0.92327 0.90600 0.92054 0.94076 0.93703 0.87990 0.92326 0.95150 0.96667 0.92392 0.87477 0.85475 0.84598 0.84755 0.82832 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.09 -1.41 3.12 -90.62 -0.28 -1.69 16 3 C -0.14 -2.27 7.75 37.16 0.29 -1.99 16 4 C 0.07 1.23 4.42 -3.82 -0.02 1.21 16 5 N -0.46 -8.85 4.35 -176.23 -0.77 -9.62 16 6 C 0.20 4.69 4.66 -4.98 -0.02 4.67 16 7 C -0.52 -12.64 8.33 -34.44 -0.29 -12.93 16 8 H 0.07 1.67 7.72 -52.49 -0.41 1.27 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -24.27 13.29 55.43 0.74 -23.53 16 11 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 15 C 0.45 8.57 3.94 -320.42 -1.26 7.30 16 16 N -0.37 -7.39 9.60 30.10 0.29 -7.10 16 17 N -0.04 -0.81 13.38 60.35 0.81 0.00 16 18 N -0.11 -1.93 13.93 60.35 0.84 -1.09 16 19 N -0.38 -6.44 3.50 -63.04 -0.22 -6.66 16 20 C 0.18 2.39 6.66 -5.20 -0.03 2.36 16 21 C -0.17 -2.11 5.48 -104.48 -0.57 -2.69 16 22 C -0.05 -0.53 9.86 -39.28 -0.39 -0.92 16 23 C -0.18 -1.79 10.11 -39.44 -0.40 -2.18 16 24 C 0.10 1.14 11.18 -17.55 -0.20 0.95 16 25 N -0.48 -6.61 10.36 -13.25 -0.14 -6.75 16 26 C 0.14 1.88 10.86 -17.55 -0.19 1.69 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.04 7.33 -51.93 -0.38 0.66 16 32 H 0.04 0.71 5.85 -51.93 -0.30 0.41 16 33 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.10 1.89 7.03 -51.93 -0.37 1.52 16 35 H 0.06 1.09 7.20 -51.93 -0.37 0.72 16 36 H 0.03 0.75 7.97 -51.93 -0.41 0.34 16 37 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.11 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.13 1.82 8.05 -51.93 -0.42 1.40 16 41 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.17 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -28.57 368.83 -7.47 -36.05 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.44 Total: 2.66 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.12 Total: -4.21 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 1.55 Total: -54.76 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.57 -7.47 -36.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646301752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.298 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds