Wall clock time and date at job start Tue Mar 31 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99643 * 2 1 4 4 C 1.50704 * 109.47303 * 293.94977 * 3 2 1 5 5 C 1.38390 * 120.00173 * 95.00180 * 4 3 2 6 6 N 1.32127 * 119.99993 * 179.97438 * 5 4 3 7 7 C 1.32157 * 119.99488 * 359.97438 * 6 5 4 8 8 C 1.38343 * 120.00716 * 0.02562 * 7 6 5 9 9 N 1.32128 * 120.00121 * 274.72802 * 4 3 2 10 10 C 1.38572 * 110.99745 * 123.95109 * 2 1 3 11 11 N 1.31218 * 126.47314 * 236.07659 * 10 2 1 12 12 N 1.28528 * 109.86337 * 180.02562 * 11 10 2 13 13 C 1.30293 * 110.05234 * 359.97438 * 12 11 10 14 14 C 1.50698 * 126.35019 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47457 * 121.01989 * 14 13 12 16 16 C 1.53005 * 109.46825 * 1.01865 * 14 13 12 17 17 C 1.50704 * 109.47293 * 241.02464 * 14 13 12 18 18 H 1.08001 * 119.99726 * 359.97438 * 17 14 13 19 19 C 1.37870 * 120.00315 * 179.97438 * 17 14 13 20 20 N 1.31523 * 119.99875 * 359.71994 * 19 17 14 21 21 Si 1.86799 * 120.00136 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47054 * 60.00168 * 21 19 17 23 23 H 1.48503 * 109.47105 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46949 * 299.99682 * 21 19 17 25 25 N 1.36452 * 126.47726 * 56.35975 * 10 2 1 26 26 C 1.46504 * 127.13553 * 0.02562 * 25 10 2 27 27 H 1.08995 * 109.47285 * 296.04911 * 1 2 3 28 28 H 1.09002 * 109.47111 * 56.05185 * 1 2 3 29 29 H 1.09001 * 109.46989 * 176.04214 * 1 2 3 30 30 H 1.09003 * 109.47631 * 53.94939 * 3 2 1 31 31 H 1.09000 * 109.46773 * 173.95602 * 3 2 1 32 32 H 1.07994 * 120.00125 * 359.95263 * 5 4 3 33 33 H 1.08008 * 119.99488 * 180.02562 * 7 6 5 34 34 H 1.07993 * 120.00014 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47454 * 186.10580 * 15 14 13 36 36 H 1.09001 * 109.46929 * 306.09818 * 15 14 13 37 37 H 1.08995 * 109.47398 * 66.09999 * 15 14 13 38 38 H 1.09003 * 109.47165 * 299.99876 * 16 14 13 39 39 H 1.08996 * 109.47327 * 60.00386 * 16 14 13 40 40 H 1.08999 * 109.46975 * 180.02562 * 16 14 13 41 41 H 0.96995 * 119.99941 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.47027 * 274.46009 * 26 25 10 43 43 H 1.09007 * 109.46765 * 34.45722 * 26 25 10 44 44 H 1.08999 * 109.47089 * 154.45461 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 0.5022 2.8353 -1.3783 6 7 0.1882 3.4281 -2.5166 7 6 0.9582 3.2687 -3.5788 8 6 2.0926 2.4809 -3.4991 9 7 2.4090 1.8915 -2.3594 10 6 1.9656 -0.7225 1.0731 11 7 2.7949 -0.2851 1.9912 12 7 3.0452 -1.2213 2.8354 13 6 2.3954 -2.3026 2.5091 14 6 2.4230 -3.6175 3.2447 15 6 1.0051 -3.9845 3.6867 16 6 3.3249 -3.4950 4.4746 17 6 2.9592 -4.6917 2.3337 18 1 3.2504 -4.4467 1.3230 19 6 3.0779 -5.9870 2.7905 20 7 2.7284 -6.2843 4.0231 21 14 3.7418 -7.3186 1.6611 22 1 5.1178 -6.9623 1.2312 23 1 3.7702 -8.6141 2.3864 24 1 2.8656 -7.4378 0.4680 25 7 1.6888 -2.0248 1.3719 26 6 0.8142 -2.9360 0.6294 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5610 1.9275 0.8309 31 1 3.0797 1.3444 0.1082 32 1 -0.1269 2.9655 -0.5102 33 1 0.7017 3.7536 -4.5092 34 1 2.7214 2.3504 -4.3673 35 1 1.0386 -4.8777 4.3106 36 1 0.5770 -3.1595 4.2561 37 1 0.3893 -4.1778 2.8083 38 1 4.3352 -3.2335 4.1597 39 1 2.9372 -2.7181 5.1335 40 1 3.3452 -4.4462 5.0064 41 1 2.8123 -7.1956 4.3446 42 1 -0.2151 -2.8038 0.9628 43 1 0.8819 -2.7168 -0.4362 44 1 1.1251 -3.9651 0.8092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650277823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:13 Heat of formation + Delta-G solvation = 145.953920 kcal Electronic energy + Delta-G solvation = -26719.959968 eV Core-core repulsion = 23095.840355 eV Total energy + Delta-G solvation = -3624.119613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30357 -41.36737 -37.70047 -35.70088 -34.58410 -34.04220 -32.26804 -31.36390 -28.66974 -27.89467 -27.17030 -25.75227 -25.32749 -25.29200 -24.59112 -22.75239 -21.84712 -20.25641 -18.99624 -17.87045 -17.24105 -17.04513 -16.44690 -16.06323 -15.95262 -15.38899 -15.03399 -14.82484 -14.39481 -14.26741 -13.74242 -13.41105 -13.08345 -12.86964 -12.67554 -12.48211 -12.23846 -11.90025 -11.79046 -11.59306 -11.45306 -11.38390 -11.11653 -10.94019 -10.81234 -10.56612 -10.34907 -10.22178 -9.88756 -9.84314 -9.62112 -9.48221 -9.32222 -9.20699 -8.94872 -8.50363 -7.65257 -6.15507 -4.27592 0.42196 0.85503 2.47961 2.78620 3.21074 3.27414 3.30665 3.42502 3.64185 3.72368 3.95632 4.00081 4.20525 4.29055 4.48935 4.81927 4.84039 4.96888 5.09579 5.11043 5.14362 5.23446 5.35890 5.49656 5.52294 5.56545 5.60524 5.83536 6.03197 6.04094 6.07233 6.46914 6.60055 6.72874 6.80560 6.82998 6.98811 7.03215 7.18734 7.29200 7.49929 7.51253 7.54901 7.74559 7.88470 8.02770 8.19717 8.69670 9.38376 9.56500 10.85781 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.003190 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.671210 B = 8775.727145 C = 9227.688536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.442 5.442 3 C 0.124 3.876 4 C 0.092 3.908 5 C 0.056 3.944 6 N -0.438 5.438 7 C 0.044 3.956 8 C 0.053 3.947 9 N -0.416 5.416 10 C 0.317 3.683 11 N -0.328 5.328 12 N -0.310 5.310 13 C 0.249 3.751 14 C 0.145 3.855 15 C -0.129 4.129 16 C -0.117 4.117 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.074 3.926 20 N -0.879 5.879 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.277 1.277 25 N -0.473 5.473 26 C 0.075 3.925 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.093 0.907 36 H 0.012 0.988 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.018 0.982 40 H 0.089 0.911 41 H 0.265 0.735 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 12.993 -11.750 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.165 5.165 3 C -0.004 4.004 4 C -0.050 4.050 5 C -0.105 4.105 6 N -0.152 5.152 7 C -0.116 4.116 8 C -0.107 4.107 9 N -0.132 5.132 10 C -0.040 4.040 11 N -0.173 5.173 12 N -0.148 5.148 13 C -0.019 4.019 14 C 0.142 3.858 15 C -0.188 4.188 16 C -0.176 4.176 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.129 4.129 20 N -0.516 5.516 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.202 1.202 25 N -0.166 5.166 26 C -0.069 4.069 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.112 0.888 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.665 13.559 -11.301 18.868 hybrid contribution -0.756 -1.224 -1.075 1.796 sum -7.421 12.336 -12.376 18.984 Atomic orbital electron populations 1.22714 0.85249 1.03859 1.01604 1.58440 1.08355 1.13466 1.36250 1.20767 1.03678 0.85278 0.90657 1.22108 0.92170 0.95331 0.95343 1.23663 0.95661 0.94219 0.96925 1.68476 1.29287 1.18167 0.99286 1.23803 0.92564 0.97110 0.98159 1.23864 0.96404 0.93726 0.96674 1.68337 1.29232 1.16838 0.98743 1.22203 1.02226 0.84607 0.94962 1.74411 1.16943 1.24045 1.01911 1.73968 1.22296 0.97614 1.20884 1.26076 0.90793 0.99360 0.85649 1.16915 0.94460 0.82172 0.92204 1.21888 0.95571 1.01286 1.00052 1.21623 0.97941 1.01274 0.96714 1.20848 1.44248 0.92145 0.98240 0.92647 1.24836 0.94633 0.98278 0.95146 1.69805 1.46870 1.19839 1.15069 0.86595 0.79804 0.80748 0.80557 1.20121 1.21046 1.20235 1.45914 1.38188 1.09272 1.23267 1.22208 0.92763 0.96265 0.95627 0.93849 0.90488 0.90223 0.90882 0.86843 0.81493 0.81329 0.81233 0.88841 0.96907 0.95064 0.94539 0.96307 0.89291 0.92512 0.91518 0.90490 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.10 60.07 0.55 0.70 16 2 N -0.44 -6.55 4.80 -183.76 -0.88 -7.43 16 3 C 0.12 1.63 4.79 -4.97 -0.02 1.61 16 4 C 0.09 1.06 5.64 -82.41 -0.46 0.59 16 5 C 0.06 0.55 9.42 -17.37 -0.16 0.38 16 6 N -0.44 -4.38 10.50 -13.06 -0.14 -4.51 16 7 C 0.04 0.35 11.22 -17.37 -0.19 0.15 16 8 C 0.05 0.47 11.22 -17.37 -0.20 0.27 16 9 N -0.42 -5.08 10.42 -9.29 -0.10 -5.17 16 10 C 0.32 5.98 7.20 -318.89 -2.30 3.69 16 11 N -0.33 -7.12 11.16 30.31 0.34 -6.78 16 12 N -0.31 -7.44 11.50 32.99 0.38 -7.06 16 13 C 0.25 5.70 6.28 -154.02 -0.97 4.73 16 14 C 0.15 3.45 0.50 -156.81 -0.08 3.37 16 15 C -0.13 -2.86 7.97 37.15 0.30 -2.56 16 16 C -0.12 -2.85 7.75 37.16 0.29 -2.56 16 17 C -0.52 -12.98 6.43 -34.44 -0.22 -13.20 16 18 H 0.06 1.43 7.54 -52.49 -0.40 1.03 16 19 C 0.07 1.86 5.15 -17.82 -0.09 1.76 16 20 N -0.88 -22.39 9.42 55.43 0.52 -21.87 16 21 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 N -0.47 -9.28 3.21 -121.46 -0.39 -9.67 16 26 C 0.07 1.18 8.05 59.85 0.48 1.66 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.75 6.17 -51.93 -0.32 0.43 16 29 H 0.08 0.90 5.43 -51.93 -0.28 0.61 16 30 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.11 1.73 7.75 -51.93 -0.40 1.33 16 32 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.09 2.22 6.27 -51.93 -0.33 1.89 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.03 0.63 6.34 -51.93 -0.33 0.30 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 41 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 42 H 0.07 0.89 7.63 -51.93 -0.40 0.50 16 43 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 44 H 0.12 2.07 5.68 -51.93 -0.29 1.78 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -30.94 352.36 -9.04 -39.97 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.98 Total: 1.77 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.08 Total: 0.61 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.27 Total: -62.49 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.94 -9.04 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650277823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.927 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds