Wall clock time and date at job start Tue Mar 31 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99643 * 2 1 4 4 C 1.50704 * 109.47303 * 293.94977 * 3 2 1 5 5 C 1.38390 * 120.00173 * 95.00180 * 4 3 2 6 6 N 1.32127 * 119.99993 * 179.97438 * 5 4 3 7 7 C 1.32157 * 119.99488 * 359.97438 * 6 5 4 8 8 C 1.38343 * 120.00716 * 0.02562 * 7 6 5 9 9 N 1.32128 * 120.00121 * 274.72802 * 4 3 2 10 10 C 1.38572 * 110.99745 * 123.95109 * 2 1 3 11 11 N 1.31218 * 126.47314 * 236.07659 * 10 2 1 12 12 N 1.28528 * 109.86337 * 180.02562 * 11 10 2 13 13 C 1.30293 * 110.05234 * 359.97438 * 12 11 10 14 14 C 1.50698 * 126.35019 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47457 * 121.01989 * 14 13 12 16 16 C 1.53005 * 109.46825 * 1.01865 * 14 13 12 17 17 C 1.50704 * 109.47293 * 241.02464 * 14 13 12 18 18 H 1.08001 * 119.99726 * 359.97438 * 17 14 13 19 19 C 1.37870 * 120.00315 * 179.97438 * 17 14 13 20 20 N 1.31523 * 119.99875 * 359.71994 * 19 17 14 21 21 Si 1.86799 * 120.00136 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47054 * 60.00168 * 21 19 17 23 23 H 1.48503 * 109.47105 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46949 * 299.99682 * 21 19 17 25 25 N 1.36452 * 126.47726 * 56.35975 * 10 2 1 26 26 C 1.46504 * 127.13553 * 0.02562 * 25 10 2 27 27 H 1.08995 * 109.47285 * 296.04911 * 1 2 3 28 28 H 1.09002 * 109.47111 * 56.05185 * 1 2 3 29 29 H 1.09001 * 109.46989 * 176.04214 * 1 2 3 30 30 H 1.09003 * 109.47631 * 53.94939 * 3 2 1 31 31 H 1.09000 * 109.46773 * 173.95602 * 3 2 1 32 32 H 1.07994 * 120.00125 * 359.95263 * 5 4 3 33 33 H 1.08008 * 119.99488 * 180.02562 * 7 6 5 34 34 H 1.07993 * 120.00014 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47454 * 186.10580 * 15 14 13 36 36 H 1.09001 * 109.46929 * 306.09818 * 15 14 13 37 37 H 1.08995 * 109.47398 * 66.09999 * 15 14 13 38 38 H 1.09003 * 109.47165 * 299.99876 * 16 14 13 39 39 H 1.08996 * 109.47327 * 60.00386 * 16 14 13 40 40 H 1.08999 * 109.46975 * 180.02562 * 16 14 13 41 41 H 0.96995 * 119.99941 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.47027 * 274.46009 * 26 25 10 43 43 H 1.09007 * 109.46765 * 34.45722 * 26 25 10 44 44 H 1.08999 * 109.47089 * 154.45461 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 0.5022 2.8353 -1.3783 6 7 0.1882 3.4281 -2.5166 7 6 0.9582 3.2687 -3.5788 8 6 2.0926 2.4809 -3.4991 9 7 2.4090 1.8915 -2.3594 10 6 1.9656 -0.7225 1.0731 11 7 2.7949 -0.2851 1.9912 12 7 3.0452 -1.2213 2.8354 13 6 2.3954 -2.3026 2.5091 14 6 2.4230 -3.6175 3.2447 15 6 1.0051 -3.9845 3.6867 16 6 3.3249 -3.4950 4.4746 17 6 2.9592 -4.6917 2.3337 18 1 3.2504 -4.4467 1.3230 19 6 3.0779 -5.9870 2.7905 20 7 2.7284 -6.2843 4.0231 21 14 3.7418 -7.3186 1.6611 22 1 5.1178 -6.9623 1.2312 23 1 3.7702 -8.6141 2.3864 24 1 2.8656 -7.4378 0.4680 25 7 1.6888 -2.0248 1.3719 26 6 0.8142 -2.9360 0.6294 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5610 1.9275 0.8309 31 1 3.0797 1.3444 0.1082 32 1 -0.1269 2.9655 -0.5102 33 1 0.7017 3.7536 -4.5092 34 1 2.7214 2.3504 -4.3673 35 1 1.0386 -4.8777 4.3106 36 1 0.5770 -3.1595 4.2561 37 1 0.3893 -4.1778 2.8083 38 1 4.3352 -3.2335 4.1597 39 1 2.9372 -2.7181 5.1335 40 1 3.3452 -4.4462 5.0064 41 1 2.8123 -7.1956 4.3446 42 1 -0.2151 -2.8038 0.9628 43 1 0.8819 -2.7168 -0.4362 44 1 1.1251 -3.9651 0.8092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650277823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:13 Heat of formation + Delta-G solvation = 127.467874 kcal Electronic energy + Delta-G solvation = -26720.761583 eV Core-core repulsion = 23095.840355 eV Total energy + Delta-G solvation = -3624.921229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.86772 -42.11776 -38.87834 -37.47967 -35.69905 -35.19587 -33.48041 -32.86212 -30.12672 -28.90059 -28.54081 -27.56837 -27.26829 -26.32887 -25.38336 -23.91832 -23.33943 -21.64415 -20.68966 -18.62965 -18.57159 -17.99375 -17.83552 -17.33785 -17.08358 -16.94110 -16.52567 -15.93740 -15.49066 -15.35431 -15.02038 -14.74466 -14.51040 -14.13868 -13.94747 -13.49261 -13.40816 -13.33313 -13.24837 -12.93315 -12.88869 -12.66168 -12.57481 -12.55625 -12.35977 -12.23489 -12.17737 -11.87166 -11.67016 -11.47705 -11.06708 -10.93599 -10.60913 -10.42513 -10.28193 -10.04491 -9.15780 -8.06884 -6.24404 -0.28555 0.12795 0.98225 1.41301 1.44416 1.48323 1.53554 1.98700 2.44202 2.52820 2.86059 3.02331 3.16957 3.31892 3.48429 3.68139 3.75885 3.94756 3.98347 4.03718 4.26816 4.27449 4.34483 4.39536 4.46343 4.53853 4.58473 4.63031 4.68561 4.74515 4.77910 4.96203 4.98169 5.13578 5.20138 5.36712 5.38074 5.50622 5.55227 5.60176 5.69407 5.98771 6.07593 6.27324 6.29634 6.31328 6.74332 6.80703 7.43301 7.93900 8.93100 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.003190 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.671210 B = 8775.727145 C = 9227.688536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.444 5.444 3 C 0.130 3.870 4 C 0.076 3.924 5 C 0.060 3.940 6 N -0.455 5.455 7 C 0.056 3.944 8 C 0.051 3.949 9 N -0.454 5.454 10 C 0.339 3.661 11 N -0.360 5.360 12 N -0.342 5.342 13 C 0.229 3.771 14 C 0.143 3.857 15 C -0.117 4.117 16 C -0.107 4.107 17 C -0.525 4.525 18 H 0.043 0.957 19 C 0.040 3.960 20 N -0.895 5.895 21 Si 0.947 3.053 22 H -0.286 1.286 23 H -0.281 1.281 24 H -0.266 1.266 25 N -0.474 5.474 26 C 0.071 3.929 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.187 0.813 33 H 0.207 0.793 34 H 0.199 0.801 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.045 0.955 38 H 0.017 0.983 39 H 0.022 0.978 40 H 0.076 0.924 41 H 0.266 0.734 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 13.835 -14.283 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.168 5.168 3 C 0.002 3.998 4 C -0.064 4.064 5 C -0.099 4.099 6 N -0.169 5.169 7 C -0.104 4.104 8 C -0.110 4.110 9 N -0.170 5.170 10 C -0.019 4.019 11 N -0.204 5.204 12 N -0.180 5.180 13 C -0.041 4.041 14 C 0.140 3.860 15 C -0.175 4.175 16 C -0.165 4.165 17 C -0.563 4.563 18 H 0.061 0.939 19 C -0.161 4.161 20 N -0.532 5.532 21 Si 0.774 3.226 22 H -0.212 1.212 23 H -0.206 1.206 24 H -0.191 1.191 25 N -0.167 5.167 26 C -0.070 4.070 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.204 0.796 33 H 0.224 0.776 34 H 0.216 0.784 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.588 14.405 -13.830 21.738 hybrid contribution -0.163 -1.361 -0.458 1.445 sum -8.751 13.044 -14.288 21.234 Atomic orbital electron populations 1.22820 0.82642 1.04814 1.02985 1.58585 1.10438 1.14182 1.33614 1.20682 1.01945 0.84635 0.92564 1.21796 0.93349 0.96698 0.94574 1.23844 0.95055 0.93322 0.97679 1.68578 1.29989 1.18575 0.99795 1.24430 0.91403 0.95706 0.98845 1.24388 0.97077 0.93103 0.96386 1.68245 1.30338 1.18382 0.99998 1.22603 1.00331 0.84549 0.94420 1.74323 1.19029 1.24046 1.03048 1.73862 1.23242 0.98484 1.22399 1.25768 0.92219 0.98885 0.87196 1.16823 0.94927 0.82554 0.91652 1.21714 0.94940 1.00548 1.00326 1.21487 0.97251 1.00464 0.97300 1.20914 1.44620 0.92886 0.97926 0.93889 1.25384 0.94815 0.99722 0.96219 1.69895 1.47206 1.20153 1.15925 0.85782 0.78681 0.78704 0.79468 1.21207 1.20635 1.19093 1.46019 1.38169 1.09887 1.22641 1.22412 0.93490 0.94548 0.96597 0.93099 0.88308 0.89624 0.89772 0.89776 0.79595 0.77605 0.78384 0.90616 0.96229 0.93600 0.96415 0.95911 0.90561 0.92448 0.88568 0.88349 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.10 127.69 1.16 1.45 16 2 N -0.44 -12.58 4.80 -735.28 -3.53 -16.11 16 3 C 0.13 3.34 4.79 85.56 0.41 3.75 16 4 C 0.08 1.65 5.64 42.55 0.24 1.89 16 5 C 0.06 1.04 9.42 84.68 0.80 1.83 16 6 N -0.45 -7.73 10.50 -195.22 -2.05 -9.78 16 7 C 0.06 0.70 11.22 84.67 0.95 1.65 16 8 C 0.05 0.76 11.22 84.67 0.95 1.71 16 9 N -0.45 -10.44 10.42 -183.29 -1.91 -12.35 16 10 C 0.34 12.63 7.20 260.12 1.87 14.50 16 11 N -0.36 -15.88 11.16 -58.01 -0.65 -16.52 16 12 N -0.34 -16.83 11.50 -49.54 -0.57 -17.40 16 13 C 0.23 10.59 6.28 137.64 0.86 11.46 16 14 C 0.14 6.89 0.50 -53.67 -0.03 6.86 16 15 C -0.12 -5.13 7.97 71.98 0.57 -4.56 16 16 C -0.11 -5.35 7.75 71.98 0.56 -4.79 16 17 C -0.52 -26.66 6.43 25.60 0.16 -26.50 16 18 H 0.04 2.25 7.54 -2.91 -0.02 2.23 16 19 C 0.04 2.01 5.15 84.65 0.44 2.45 16 20 N -0.89 -45.85 9.42 21.45 0.20 -45.65 16 21 Si 0.95 40.59 29.54 68.60 2.03 42.62 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 N -0.47 -18.29 3.21 -538.18 -1.73 -20.01 16 26 C 0.07 2.13 8.05 127.77 1.03 3.16 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.61 6.17 -2.39 -0.01 1.59 16 29 H 0.09 1.64 5.43 -2.39 -0.01 1.63 16 30 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 31 H 0.08 2.65 7.75 -2.39 -0.02 2.63 16 32 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.08 3.60 6.27 -2.39 -0.01 3.59 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 1.82 6.34 -2.39 -0.02 1.81 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 3.98 6.06 -2.39 -0.01 3.96 16 41 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 42 H 0.10 2.30 7.63 -2.39 -0.02 2.28 16 43 H 0.10 2.50 7.83 -2.38 -0.02 2.48 16 44 H 0.10 3.38 5.68 -2.39 -0.01 3.36 16 Total: -1.00 -68.26 352.36 2.80 -65.46 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.02 Total: 14.89 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 9.98 Total: 14.85 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -10.23 Total: -137.82 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -68.26 2.80 -65.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650277823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.929 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds