Wall clock time and date at job start Tue Mar 31 2020 11:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47151 * 269.99925 * 3 2 1 5 5 H 1.48503 * 109.47426 * 29.99827 * 3 2 1 6 6 H 1.48498 * 109.47310 * 150.00082 * 3 2 1 7 7 C 1.38809 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99728 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00239 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00050 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47065 * 185.32842 * 10 9 7 12 12 H 1.09003 * 109.58540 * 298.82797 * 11 10 9 13 13 C 1.53193 * 109.58802 * 59.10763 * 11 10 9 14 14 C 1.53071 * 109.29994 * 174.28206 * 13 11 10 15 15 C 1.53041 * 109.65844 * 298.84866 * 14 13 11 16 16 C 1.53195 * 109.31431 * 61.29407 * 15 14 13 17 17 N 1.46921 * 109.58950 * 178.54156 * 11 10 9 18 18 C 1.34780 * 120.62825 * 6.62382 * 17 11 10 19 19 O 1.21280 * 119.99994 * 4.23805 * 18 17 11 20 20 C 1.50701 * 119.99946 * 184.23602 * 18 17 11 21 21 H 1.09001 * 110.01792 * 59.29832 * 20 18 17 22 22 C 1.53874 * 110.03205 * 180.68997 * 20 18 17 23 23 C 1.54271 * 106.59380 * 119.28445 * 22 20 18 24 24 C 1.54883 * 104.19957 * 23.61210 * 23 22 20 25 25 F 1.39904 * 110.75553 * 80.36907 * 24 23 22 26 26 F 1.39903 * 110.75786 * 203.55619 * 24 23 22 27 27 C 1.54270 * 110.03094 * 297.91036 * 20 18 17 28 28 H 0.97002 * 119.99440 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99533 * 359.72444 * 9 7 2 30 30 H 1.08997 * 109.47437 * 305.32802 * 10 9 7 31 31 H 1.08997 * 109.47235 * 65.33152 * 10 9 7 32 32 H 1.09008 * 109.49570 * 294.37561 * 13 11 10 33 33 H 1.09000 * 109.49680 * 54.47042 * 13 11 10 34 34 H 1.08994 * 109.45887 * 178.75845 * 14 13 11 35 35 H 1.09008 * 109.33479 * 58.86079 * 14 13 11 36 36 H 1.09006 * 109.49587 * 301.34890 * 15 14 13 37 37 H 1.08993 * 109.52674 * 181.26489 * 15 14 13 38 38 H 1.08996 * 109.58917 * 185.58205 * 16 15 14 39 39 H 1.09007 * 109.70022 * 65.22512 * 16 15 14 40 40 H 1.09000 * 110.03393 * 238.56628 * 22 20 18 41 41 H 1.08998 * 110.03053 * 359.95726 * 22 20 18 42 42 H 1.09002 * 110.48537 * 142.29285 * 23 22 20 43 43 H 1.09000 * 110.48570 * 264.79217 * 23 22 20 44 44 H 1.08998 * 110.48639 * 335.78235 * 27 20 18 45 45 H 1.08993 * 110.48726 * 98.42870 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6109 -2.1944 0.1366 12 1 5.9504 -1.6006 -0.7122 13 6 5.8776 -1.4302 1.4372 14 6 7.3881 -1.2820 1.6363 15 6 8.0313 -2.6663 1.7452 16 6 7.7886 -3.4414 0.4462 17 7 6.3452 -3.4664 0.1731 18 6 5.7068 -4.6341 -0.0403 19 8 4.5318 -4.6368 -0.3408 20 6 6.4531 -5.9364 0.0944 21 1 6.8554 -6.0333 1.1028 22 6 5.5145 -7.1161 -0.2142 23 6 6.1198 -7.8554 -1.4254 24 6 7.6227 -7.4833 -1.3854 25 9 8.3035 -8.2697 -0.4498 26 9 8.1997 -7.6136 -2.6533 27 6 7.5967 -5.9995 -0.9391 28 1 -0.4849 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0030 30 1 3.7789 -3.0821 0.8409 31 1 3.9227 -3.0006 -0.9314 32 1 5.4173 -0.4437 1.3805 33 1 5.4544 -1.9819 2.2766 34 1 7.5804 -0.7194 2.5498 35 1 7.8137 -0.7497 0.7855 36 1 7.5883 -3.2087 2.5805 37 1 9.1034 -2.5580 1.9093 38 1 8.1577 -4.4612 0.5548 39 1 8.3078 -2.9506 -0.3770 40 1 5.4621 -7.7860 0.6441 41 1 4.5191 -6.7467 -0.4607 42 1 5.9905 -8.9325 -1.3184 43 1 5.6630 -7.5076 -2.3519 44 1 7.3806 -5.3499 -1.7873 45 1 8.5442 -5.7226 -0.4770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673107172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:56 Heat of formation + Delta-G solvation = -112.524782 kcal Electronic energy + Delta-G solvation = -28161.718881 eV Core-core repulsion = 24043.408853 eV Total energy + Delta-G solvation = -4118.310028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.13838 -47.29531 -40.84371 -37.98371 -36.68445 -34.85642 -32.99735 -32.07798 -30.33561 -29.46268 -28.51931 -26.47636 -24.65438 -23.23221 -22.10715 -21.65217 -20.98959 -20.38056 -19.06408 -18.09963 -17.49838 -17.17980 -16.71579 -16.27434 -15.87046 -15.49096 -14.76211 -14.60702 -14.37837 -14.35136 -14.21401 -13.83166 -13.71158 -13.61092 -13.45276 -13.19430 -13.10406 -12.66589 -12.55166 -12.41244 -12.07510 -11.94559 -11.71476 -11.62292 -11.32818 -11.12377 -11.03410 -10.99079 -10.86767 -10.77797 -10.57081 -10.37615 -10.15577 -9.50224 -9.07840 -8.76250 -8.48378 -7.08200 -5.67263 -3.01251 2.58935 2.86000 3.34992 3.39503 3.42681 3.48534 3.50845 3.84863 4.03723 4.41118 4.57377 4.61882 4.65846 4.71885 4.80571 4.84664 4.92302 4.94110 5.04770 5.07021 5.14300 5.23460 5.30703 5.40991 5.51258 5.57002 5.61052 5.65348 5.69224 5.78886 5.79859 5.84995 5.90179 5.99258 6.08005 6.11598 6.39704 6.55738 6.95538 7.16117 7.43174 8.09435 8.26432 8.52368 9.31766 10.03732 10.23833 11.51815 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.003675 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.388477 B = 7617.453207 C = 8645.556795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.231 4.231 8 H 0.090 0.910 9 N -0.761 5.761 10 C 0.165 3.835 11 C 0.136 3.864 12 H 0.070 0.930 13 C -0.128 4.128 14 C -0.121 4.121 15 C -0.135 4.135 16 C 0.100 3.900 17 N -0.604 5.604 18 C 0.514 3.486 19 O -0.505 6.505 20 C -0.111 4.111 21 H 0.107 0.893 22 C -0.118 4.118 23 C -0.156 4.156 24 C 0.276 3.724 25 F -0.193 7.193 26 F -0.196 7.196 27 C -0.152 4.152 28 H 0.258 0.742 29 H 0.355 0.645 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.546 -13.287 1.143 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.195 4.195 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.108 0.892 9 N -0.408 5.408 10 C 0.039 3.961 11 C 0.033 3.967 12 H 0.088 0.912 13 C -0.167 4.167 14 C -0.159 4.159 15 C -0.173 4.173 16 C -0.023 4.023 17 N -0.338 5.338 18 C 0.300 3.700 19 O -0.379 6.379 20 C -0.133 4.133 21 H 0.125 0.875 22 C -0.155 4.155 23 C -0.194 4.194 24 C 0.240 3.760 25 F -0.174 7.174 26 F -0.177 7.177 27 C -0.190 4.190 28 H 0.068 0.932 29 H 0.187 0.813 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.701 -13.412 0.973 25.530 hybrid contribution 0.937 1.265 0.090 1.577 sum 22.638 -12.147 1.062 25.713 Atomic orbital electron populations 1.69709 1.05039 1.25537 1.58409 1.24660 0.95219 0.96983 1.02655 0.86560 0.79088 0.85253 0.77660 1.21221 1.21854 1.20528 1.19064 0.80571 0.94706 1.41740 0.89190 1.42931 1.04185 1.02319 1.91406 1.21298 0.85758 0.87726 1.01341 1.21626 0.94564 0.83150 0.97345 0.91232 1.21965 0.95191 1.01633 0.97890 1.21559 0.96064 0.96335 1.01947 1.21920 1.00841 0.96922 0.97608 1.21968 0.81071 1.01618 0.97689 1.48079 1.08719 1.06264 1.70763 1.20329 0.87552 0.84754 0.77327 1.90839 1.15541 1.85747 1.45790 1.21894 0.95905 0.94590 1.00923 0.87500 1.22165 1.01233 0.94832 0.97314 1.23326 0.90946 1.03060 1.02074 1.22049 0.89817 0.91354 0.72808 1.93007 1.82225 1.76690 1.65433 1.93008 1.86802 1.96761 1.41080 1.23487 1.00266 0.94041 1.01176 0.93228 0.81270 0.94424 0.92438 0.90160 0.91305 0.91736 0.91944 0.91385 0.90904 0.89451 0.91214 0.90222 0.87279 0.88924 0.88048 0.87691 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.35 13.97 55.49 0.78 -29.57 16 2 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 3 Si 0.88 22.50 27.73 -169.99 -4.71 17.78 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.23 -6.83 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.90 8.06 -52.48 -0.42 2.48 16 9 N -0.76 -18.82 5.07 -59.91 -0.30 -19.12 16 10 C 0.16 3.47 4.13 -4.05 -0.02 3.45 16 11 C 0.14 2.13 3.05 -67.60 -0.21 1.92 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.13 -1.85 5.11 -26.59 -0.14 -1.98 16 14 C -0.12 -1.26 5.88 -26.67 -0.16 -1.42 16 15 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 16 C 0.10 0.83 5.69 -3.71 -0.02 0.81 16 17 N -0.60 -7.49 2.97 -165.22 -0.49 -7.98 16 18 C 0.51 6.84 6.82 -10.98 -0.07 6.76 16 19 O -0.50 -8.97 10.73 5.56 0.06 -8.91 16 20 C -0.11 -1.03 2.44 -90.65 -0.22 -1.25 16 21 H 0.11 0.82 7.85 -51.93 -0.41 0.41 16 22 C -0.12 -1.10 6.40 -25.61 -0.16 -1.26 16 23 C -0.16 -1.30 6.43 -25.07 -0.16 -1.46 16 24 C 0.28 2.47 2.50 -24.70 -0.06 2.41 16 25 F -0.19 -1.88 17.21 2.25 0.04 -1.85 16 26 F -0.20 -2.05 17.22 2.25 0.04 -2.01 16 27 C -0.15 -1.19 4.62 -25.03 -0.12 -1.31 16 28 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 29 H 0.35 8.36 4.56 -40.82 -0.19 8.18 16 30 H 0.04 0.87 7.23 -51.93 -0.38 0.49 16 31 H 0.06 1.33 6.24 -51.93 -0.32 1.01 16 32 H 0.08 1.31 7.11 -51.92 -0.37 0.94 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.54 4.03 -51.93 -0.21 0.33 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 1.28 6.39 -51.93 -0.33 0.95 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 0.88 7.85 -51.93 -0.41 0.47 16 45 H 0.10 0.59 6.47 -51.93 -0.34 0.25 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -34.40 346.31 -7.90 -42.30 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.77 Total: 5.83 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.75 Total: -1.69 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.02 Total: -56.68 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.06 Total: -8.91 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.40 -7.90 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673107172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.225 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds