Wall clock time and date at job start Tue Mar 31 2020 11:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00061 * 2 1 4 4 H 1.48507 * 109.47058 * 270.00368 * 3 2 1 5 5 H 1.48502 * 109.47054 * 30.00003 * 3 2 1 6 6 H 1.48497 * 109.47117 * 150.00203 * 3 2 1 7 7 C 1.38808 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99967 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00195 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00106 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47099 * 184.97440 * 10 9 7 12 12 H 1.09000 * 109.70260 * 61.00720 * 11 10 9 13 13 C 1.53194 * 109.58539 * 300.64939 * 11 10 9 14 14 C 1.53041 * 109.34010 * 185.59309 * 13 11 10 15 15 C 1.53039 * 109.53545 * 61.34790 * 14 13 11 16 16 C 1.53190 * 109.31414 * 298.63360 * 15 14 13 17 17 N 1.46928 * 108.77194 * 54.63919 * 16 15 14 18 18 C 1.34777 * 120.62865 * 126.39060 * 17 16 15 19 19 O 1.21280 * 119.99856 * 176.36099 * 18 17 16 20 20 C 1.50701 * 120.00354 * 356.35909 * 18 17 16 21 21 H 1.09003 * 110.43345 * 300.70078 * 20 18 17 22 22 C 1.54888 * 110.48834 * 63.24014 * 20 18 17 23 23 C 1.55026 * 102.68268 * 156.52089 * 22 20 18 24 24 C 1.54265 * 104.27987 * 322.23404 * 23 22 20 25 25 F 1.39903 * 110.03202 * 264.23351 * 24 23 22 26 26 F 1.39901 * 110.07344 * 142.82831 * 24 23 22 27 27 C 1.53873 * 106.60155 * 23.52044 * 24 23 22 28 28 H 0.97000 * 119.99731 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99454 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47055 * 64.97615 * 10 9 7 31 31 H 1.09002 * 109.47164 * 304.97199 * 10 9 7 32 32 H 1.08999 * 109.49646 * 65.63030 * 13 11 10 33 33 H 1.08998 * 109.49847 * 305.56498 * 13 11 10 34 34 H 1.08997 * 109.46319 * 181.37265 * 14 13 11 35 35 H 1.09002 * 109.46092 * 301.33075 * 14 13 11 36 36 H 1.08994 * 109.49602 * 58.59341 * 15 14 13 37 37 H 1.09008 * 109.49566 * 178.65147 * 15 14 13 38 38 H 1.09007 * 109.58381 * 174.42130 * 16 15 14 39 39 H 1.08999 * 109.59044 * 294.84996 * 16 15 14 40 40 H 1.08997 * 110.75956 * 274.94249 * 22 20 18 41 41 H 1.09004 * 110.75533 * 38.30887 * 22 20 18 42 42 H 1.09006 * 110.52169 * 203.49237 * 23 22 20 43 43 H 1.08995 * 110.48128 * 80.95842 * 23 22 20 44 44 H 1.08999 * 110.03168 * 240.71599 * 27 24 23 45 45 H 1.08997 * 110.03358 * 119.27951 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6117 -2.1941 0.1234 12 1 5.8134 -1.6776 1.0618 13 6 6.0725 -1.3247 -1.0508 14 6 7.5939 -1.1671 -0.9982 15 6 8.2554 -2.5412 -1.1258 16 6 7.8200 -3.4241 0.0480 17 7 6.3518 -3.4629 0.0912 18 6 5.6960 -4.6403 0.1009 19 8 4.4878 -4.6606 0.2033 20 6 6.4641 -5.9317 -0.0155 21 1 7.0299 -5.9553 -0.9469 22 6 7.4099 -6.1112 1.1979 23 6 7.6184 -7.6468 1.2426 24 6 6.2406 -8.2290 0.8653 25 9 5.5193 -8.5417 2.0225 26 9 6.4024 -9.3740 0.0779 27 6 5.5066 -7.1386 0.0653 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3621 -0.0007 30 1 3.9169 -3.0031 -0.9321 31 1 3.7839 -3.0799 0.8413 32 1 5.6027 -0.3435 -0.9833 33 1 5.7882 -1.8004 -1.9893 34 1 7.9215 -0.5288 -1.8187 35 1 7.8794 -0.7134 -0.0491 36 1 7.9507 -3.0060 -2.0634 37 1 9.3393 -2.4259 -1.1123 38 1 8.2083 -4.4333 -0.0902 39 1 8.2021 -3.0077 0.9800 40 1 8.3554 -5.5956 1.0303 41 1 6.9343 -5.7601 2.1136 42 1 7.9052 -7.9644 2.2452 43 1 8.3726 -7.9505 0.5168 44 1 4.5885 -6.8530 0.5787 45 1 5.2774 -7.5011 -0.9368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700344606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:08 Heat of formation + Delta-G solvation = -112.943754 kcal Electronic energy + Delta-G solvation = -28064.766619 eV Core-core repulsion = 23946.438423 eV Total energy + Delta-G solvation = -4118.328196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.10420 -47.17308 -40.81274 -37.96025 -36.79470 -34.84478 -32.94272 -32.05942 -30.24801 -29.68449 -28.39172 -26.47957 -24.67186 -23.21177 -22.27348 -21.53269 -20.95367 -20.47767 -19.05083 -18.08850 -17.56242 -17.13334 -16.69572 -16.05696 -15.97324 -15.33004 -14.82466 -14.57453 -14.49567 -14.36206 -14.11423 -13.87307 -13.71264 -13.52809 -13.48726 -13.26403 -12.94158 -12.66601 -12.34115 -12.28218 -12.09941 -12.05227 -11.84849 -11.60064 -11.30722 -11.26182 -11.11563 -11.04270 -10.92025 -10.77993 -10.60213 -10.36985 -10.18029 -9.48707 -8.96551 -8.81078 -8.47619 -7.07906 -5.66017 -3.00135 2.61908 2.84570 3.40670 3.42348 3.46553 3.48920 3.65435 3.77958 4.07869 4.45498 4.52452 4.56830 4.66701 4.70273 4.77124 4.82740 4.84212 4.89742 4.99802 5.05924 5.15050 5.22220 5.28258 5.39784 5.42229 5.61696 5.63049 5.65305 5.66174 5.68202 5.77963 5.82484 5.86683 5.89925 6.05579 6.07728 6.36532 6.54448 6.97573 7.16910 7.43807 8.10966 8.27987 8.53649 9.33072 10.04906 10.24966 11.53086 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.003781 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.486888 B = 7403.257726 C = 8782.295794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.231 4.231 8 H 0.091 0.909 9 N -0.761 5.761 10 C 0.165 3.835 11 C 0.136 3.864 12 H 0.071 0.929 13 C -0.130 4.130 14 C -0.121 4.121 15 C -0.135 4.135 16 C 0.100 3.900 17 N -0.604 5.604 18 C 0.514 3.486 19 O -0.507 6.507 20 C -0.111 4.111 21 H 0.109 0.891 22 C -0.118 4.118 23 C -0.160 4.160 24 C 0.281 3.719 25 F -0.196 7.196 26 F -0.201 7.201 27 C -0.153 4.153 28 H 0.258 0.742 29 H 0.355 0.645 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.953 -12.861 -0.064 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.195 4.195 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.108 0.892 9 N -0.409 5.409 10 C 0.039 3.961 11 C 0.034 3.966 12 H 0.089 0.911 13 C -0.168 4.168 14 C -0.159 4.159 15 C -0.174 4.174 16 C -0.023 4.023 17 N -0.338 5.338 18 C 0.301 3.699 19 O -0.381 6.381 20 C -0.133 4.133 21 H 0.127 0.873 22 C -0.156 4.156 23 C -0.198 4.198 24 C 0.245 3.755 25 F -0.177 7.177 26 F -0.181 7.181 27 C -0.191 4.191 28 H 0.068 0.932 29 H 0.187 0.813 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.035 -13.017 0.008 27.334 hybrid contribution 0.601 1.166 -0.067 1.314 sum 24.637 -11.851 -0.059 27.339 Atomic orbital electron populations 1.69708 1.05030 1.25524 1.58418 1.24660 0.95220 0.96964 1.02673 0.86569 0.79170 0.85305 0.77634 1.21206 1.21803 1.20519 1.19079 0.80585 0.94737 1.41700 0.89156 1.42958 1.04200 1.02326 1.91395 1.21290 0.85875 0.87792 1.01169 1.21631 0.94096 0.82872 0.98047 0.91070 1.21969 0.94881 1.00865 0.99097 1.21550 0.95792 0.96462 1.02088 1.21933 1.00220 0.96467 0.98738 1.21980 0.80131 1.01167 0.98983 1.48061 1.06457 1.05738 1.73536 1.20273 0.88100 0.84590 0.76914 1.90865 1.13609 1.85959 1.47682 1.22100 0.97148 0.93044 1.01014 0.87315 1.22757 0.99918 0.94616 0.98277 1.23390 0.94787 0.96648 1.04942 1.21795 0.92801 0.82536 0.78354 1.93039 1.79956 1.93976 1.50682 1.93012 1.96235 1.54202 1.74700 1.23099 1.00607 0.92528 1.02883 0.93230 0.81265 0.94985 0.91910 0.90432 0.91245 0.91734 0.91869 0.91418 0.90914 0.89235 0.91222 0.88767 0.89583 0.88567 0.88123 0.86433 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.56 13.97 55.49 0.78 -29.79 16 2 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 3 Si 0.88 22.61 27.73 -169.99 -4.71 17.89 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 7 C -0.23 -6.91 10.47 -15.06 -0.16 -7.07 16 8 H 0.09 2.95 8.06 -52.48 -0.42 2.53 16 9 N -0.76 -19.03 5.19 -59.91 -0.31 -19.34 16 10 C 0.16 3.52 4.13 -4.04 -0.02 3.50 16 11 C 0.14 2.14 3.10 -67.60 -0.21 1.93 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.13 -1.82 5.10 -26.61 -0.14 -1.96 16 14 C -0.12 -1.21 5.88 -26.69 -0.16 -1.37 16 15 C -0.14 -1.04 6.08 -26.61 -0.16 -1.20 16 16 C 0.10 0.78 5.57 -3.71 -0.02 0.76 16 17 N -0.60 -7.40 2.97 -165.21 -0.49 -7.89 16 18 C 0.51 6.92 6.96 -10.98 -0.08 6.85 16 19 O -0.51 -9.32 10.94 5.56 0.06 -9.26 16 20 C -0.11 -1.00 2.32 -90.11 -0.21 -1.21 16 21 H 0.11 0.73 7.83 -51.93 -0.41 0.33 16 22 C -0.12 -0.78 5.43 -24.67 -0.13 -0.91 16 23 C -0.16 -1.03 6.40 -25.00 -0.16 -1.19 16 24 C 0.28 2.77 2.57 -25.61 -0.07 2.71 16 25 F -0.20 -2.39 17.04 2.25 0.04 -2.35 16 26 F -0.20 -2.17 17.04 2.25 0.04 -2.14 16 27 C -0.15 -1.60 5.87 -25.61 -0.15 -1.75 16 28 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 29 H 0.35 8.42 4.25 -40.82 -0.17 8.24 16 30 H 0.03 0.74 7.22 -51.93 -0.37 0.37 16 31 H 0.06 1.49 6.25 -51.93 -0.32 1.17 16 32 H 0.08 1.21 6.91 -51.93 -0.36 0.85 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.09 0.46 4.12 -51.93 -0.21 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.38 5.95 -51.93 -0.31 0.07 16 41 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 42 H 0.10 0.56 8.11 -51.93 -0.42 0.13 16 43 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 44 H 0.12 1.55 6.75 -51.93 -0.35 1.20 16 45 H 0.10 0.97 8.02 -51.93 -0.42 0.55 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -35.57 345.97 -7.88 -43.46 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.74 Total: 5.24 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.75 Total: -1.02 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.03 Total: -57.03 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.26 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.08 Total: -4.49 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.57 -7.88 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700344606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.488 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds