Wall clock time and date at job start Tue Mar 31 2020 10:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 120.00025 * 2 1 4 4 H 1.48500 * 109.46932 * 269.99872 * 3 2 1 5 5 H 1.48496 * 109.47164 * 30.00348 * 3 2 1 6 6 H 1.48499 * 109.46676 * 150.00364 * 3 2 1 7 7 C 1.38811 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99530 * 0.02562 * 7 2 1 9 9 N 1.36927 * 119.99982 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00009 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46865 * 35.00509 * 10 9 7 12 12 C 1.53002 * 109.47165 * 155.00381 * 10 9 7 13 13 N 1.46505 * 109.47089 * 305.00060 * 12 10 9 14 14 C 1.34780 * 120.00303 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99436 * 359.97438 * 14 13 12 16 16 C 1.50692 * 119.99926 * 180.02562 * 14 13 12 17 17 H 1.08992 * 109.48043 * 59.99425 * 16 14 13 18 18 C 1.53001 * 109.46894 * 299.99081 * 16 14 13 19 19 C 1.53008 * 109.47105 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.46800 * 60.00402 * 19 18 16 21 21 C 1.52997 * 109.47143 * 300.00009 * 20 19 18 22 22 F 1.39905 * 109.47157 * 299.99947 * 21 20 19 23 23 F 1.39900 * 109.47010 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47232 * 59.99957 * 21 20 19 25 25 C 1.53002 * 109.47132 * 275.00164 * 10 9 7 26 26 C 1.53003 * 117.49699 * 128.62299 * 25 10 9 27 27 C 1.52997 * 117.49800 * 60.00227 * 25 10 9 28 28 H 0.97004 * 119.99910 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00095 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47067 * 185.00180 * 12 10 9 31 31 H 1.08992 * 109.47461 * 64.99879 * 12 10 9 32 32 H 0.97006 * 119.99939 * 0.02562 * 13 12 10 33 33 H 1.08992 * 109.47514 * 300.00674 * 18 16 14 34 34 H 1.09001 * 109.47109 * 60.00859 * 18 16 14 35 35 H 1.09000 * 109.47188 * 180.02562 * 19 18 16 36 36 H 1.09002 * 109.47288 * 300.00564 * 19 18 16 37 37 H 1.09004 * 109.46930 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47067 * 60.00027 * 20 19 18 39 39 H 1.09002 * 109.47045 * 59.99942 * 24 21 20 40 40 H 1.09000 * 109.47140 * 179.97438 * 24 21 20 41 41 H 1.08994 * 115.54957 * 274.32947 * 25 10 9 42 42 H 1.09006 * 117.49403 * 359.97438 * 26 25 10 43 43 H 1.08995 * 117.49996 * 145.02029 * 26 25 10 44 44 H 1.08994 * 117.49700 * 214.97915 * 27 25 10 45 45 H 1.09002 * 117.49975 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1374 0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5644 -3.2066 -0.5892 12 6 5.4990 -2.2591 -0.6101 13 7 5.3611 -1.6642 -1.9418 14 6 6.4587 -1.3872 -2.6732 15 8 7.5607 -1.6300 -2.2287 16 6 6.3167 -0.7748 -4.0428 17 1 5.8060 0.1846 -3.9607 18 6 5.5027 -1.7110 -4.9381 19 6 5.3591 -1.0895 -6.3289 20 6 6.7463 -0.8788 -6.9390 21 6 7.5603 0.0574 -6.0437 22 9 6.9050 1.2890 -5.9387 23 9 8.8285 0.2506 -6.6018 24 6 7.7039 -0.5640 -4.6530 25 6 4.2587 -2.9752 1.4371 26 6 3.8321 -4.4156 1.7273 27 6 2.9755 -3.2492 2.2240 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0004 30 1 6.0104 -3.2183 -0.6919 31 1 6.0785 -1.5917 0.0276 32 1 4.4797 -1.4697 -2.2972 33 1 6.0134 -2.6704 -5.0202 34 1 4.5146 -1.8615 -4.5033 35 1 4.7787 -1.7563 -6.9667 36 1 4.8485 -0.1300 -6.2471 37 1 6.6439 -0.4364 -7.9300 38 1 7.2568 -1.8383 -7.0208 39 1 8.2145 -1.5236 -4.7347 40 1 8.2843 0.1027 -4.0152 41 1 5.1128 -2.5822 1.9883 42 1 3.4466 -5.0038 0.8944 43 1 4.4058 -4.9706 2.4695 44 1 2.9856 -3.0368 3.2930 45 1 2.0268 -3.0699 1.7180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752482546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:40 Heat of formation + Delta-G solvation = -121.317601 kcal Electronic energy + Delta-G solvation = -27455.887790 eV Core-core repulsion = 23337.196476 eV Total energy + Delta-G solvation = -4118.691314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.13257 -47.11701 -40.07207 -37.91176 -37.09062 -34.84410 -33.52615 -31.76801 -31.18915 -30.21542 -28.42001 -24.71883 -23.23275 -22.99391 -22.15889 -21.73404 -20.70519 -20.12478 -19.61421 -18.11806 -17.47247 -17.09161 -16.60728 -16.01190 -15.79161 -15.55979 -15.17978 -14.88216 -14.52785 -14.18459 -14.11642 -13.89392 -13.56198 -13.44384 -13.34562 -13.00412 -12.95774 -12.80339 -12.49457 -12.37094 -12.11193 -11.56746 -11.50468 -11.42126 -11.17973 -11.05059 -10.97321 -10.92810 -10.77946 -10.62316 -10.31295 -9.80390 -9.75087 -9.52793 -9.41855 -9.06572 -8.84532 -7.41591 -5.87381 -3.23954 2.70729 3.17953 3.29743 3.34521 3.39967 3.60303 3.94226 4.02731 4.15133 4.36111 4.49623 4.54631 4.63016 4.78068 4.91260 4.92388 5.05074 5.11960 5.20385 5.28086 5.37491 5.47046 5.50315 5.51973 5.59835 5.62151 5.66786 5.70561 5.74531 5.83490 5.88226 5.93685 5.98433 6.09140 6.14451 6.42562 6.52123 6.68200 6.70748 6.95162 7.70346 7.86481 8.30376 8.34201 9.07904 9.80623 9.99752 11.30176 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.003844 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.913440 B = 7282.903776 C = 8442.180783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.199 3.801 11 H 0.064 0.936 12 C 0.115 3.885 13 N -0.714 5.714 14 C 0.518 3.482 15 O -0.550 6.550 16 C -0.108 4.108 17 H 0.108 0.892 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.158 4.158 21 C 0.288 3.712 22 F -0.199 7.199 23 F -0.202 7.202 24 C -0.136 4.136 25 C -0.165 4.165 26 C -0.193 4.193 27 C -0.154 4.154 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 -5.036 -11.107 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.089 3.911 11 H 0.082 0.918 12 C -0.009 4.009 13 N -0.365 5.365 14 C 0.303 3.697 15 O -0.428 6.428 16 C -0.130 4.130 17 H 0.126 0.874 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.196 4.196 21 C 0.252 3.748 22 F -0.180 7.180 23 F -0.183 7.183 24 C -0.175 4.175 25 C -0.186 4.186 26 C -0.231 4.231 27 C -0.191 4.191 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.942 -5.225 -10.802 17.649 hybrid contribution 0.227 1.632 0.079 1.650 sum 13.170 -3.593 -10.723 17.359 Atomic orbital electron populations 1.69689 1.05078 1.25910 1.57022 1.24633 0.95116 0.97023 1.01813 0.86657 0.79332 0.85299 0.77840 1.21042 1.21783 1.20373 1.18995 0.80295 0.94536 1.43458 0.88995 1.42845 1.04114 1.01690 1.89826 1.20021 0.89739 0.89679 0.91669 0.91797 1.21667 0.98379 0.98143 0.82727 1.46015 1.09560 1.62986 1.17961 1.20288 0.84545 0.78341 0.86484 1.90684 1.25879 1.53702 1.72579 1.21271 0.96907 1.01712 0.93097 0.87406 1.21639 1.00890 0.98336 0.94604 1.21521 0.95248 1.02708 0.96090 1.22551 0.97394 1.00283 0.99419 1.21121 0.76932 0.81474 0.95253 1.93007 1.81179 1.46732 1.97056 1.93004 1.42496 1.95813 1.87022 1.22276 0.98139 1.04029 0.93019 1.22950 0.99092 0.97132 0.99443 1.22942 1.05428 0.91288 1.03420 1.22838 0.96809 1.00374 0.99117 0.92981 0.80490 0.91166 0.91817 0.75276 0.90728 0.89797 0.89845 0.90389 0.89424 0.88679 0.88039 0.88782 0.89172 0.89405 0.90039 0.90207 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.97 55.49 0.78 -26.61 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 20.94 27.74 -169.99 -4.71 16.23 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.07 9.11 -15.06 -0.14 -6.21 16 8 H 0.09 2.47 7.14 -52.48 -0.37 2.10 16 9 N -0.74 -15.37 4.34 -53.42 -0.23 -15.60 16 10 C 0.20 3.36 2.70 -67.93 -0.18 3.18 16 11 H 0.06 1.10 7.84 -51.93 -0.41 0.70 16 12 C 0.12 1.74 5.22 -4.04 -0.02 1.72 16 13 N -0.71 -10.22 5.28 -60.29 -0.32 -10.53 16 14 C 0.52 7.36 7.15 -10.99 -0.08 7.28 16 15 O -0.55 -9.47 15.98 5.55 0.09 -9.38 16 16 C -0.11 -1.22 2.41 -91.77 -0.22 -1.44 16 17 H 0.11 1.23 7.80 -51.93 -0.41 0.83 16 18 C -0.12 -1.04 5.10 -26.73 -0.14 -1.18 16 19 C -0.12 -0.91 5.80 -26.73 -0.16 -1.07 16 20 C -0.16 -1.24 5.45 -26.73 -0.15 -1.39 16 21 C 0.29 3.03 2.10 -26.73 -0.06 2.98 16 22 F -0.20 -2.44 16.03 2.25 0.04 -2.41 16 23 F -0.20 -2.39 17.06 2.25 0.04 -2.35 16 24 C -0.14 -1.50 4.02 -26.73 -0.11 -1.61 16 25 C -0.16 -2.67 5.36 -90.62 -0.49 -3.16 16 26 C -0.19 -2.79 10.18 -26.73 -0.27 -3.06 16 27 C -0.15 -2.66 9.78 -26.73 -0.26 -2.92 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.36 7.69 5.66 -40.82 -0.23 7.46 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 5.81 7.56 -40.82 -0.31 5.51 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.75 7.56 -51.93 -0.39 0.36 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.66 7.80 -51.93 -0.41 0.26 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 41 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 42 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.11 2.24 6.23 -51.93 -0.32 1.91 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -29.96 364.39 -8.27 -38.23 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -7.08 Total: 13.61 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.36 Total: -6.68 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.22 Total: -52.75 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.07 Total: -4.76 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.96 -8.27 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752482546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.084 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds