Wall clock time and date at job start Tue Mar 31 2020 10:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48500 * 109.47413 * 240.00048 * 3 2 1 5 5 H 1.48508 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47294 * 120.00018 * 3 2 1 7 7 C 1.38811 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00287 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46891 * 325.00667 * 10 9 7 12 12 C 1.52997 * 109.47417 * 205.00318 * 10 9 7 13 13 N 1.46495 * 109.46909 * 55.00401 * 12 10 9 14 14 C 1.34780 * 119.99828 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00130 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00031 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.46945 * 299.99663 * 16 14 13 18 18 C 1.53001 * 109.47078 * 59.99285 * 16 14 13 19 19 C 1.53006 * 109.46904 * 180.02562 * 18 16 14 20 20 C 1.53005 * 109.46949 * 300.00204 * 19 18 16 21 21 C 1.52991 * 109.47095 * 60.00216 * 20 19 18 22 22 F 1.39902 * 109.47371 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.47306 * 59.99759 * 21 20 19 24 24 C 1.52997 * 109.47112 * 179.97438 * 16 14 13 25 25 C 1.53006 * 109.46883 * 85.00233 * 10 9 7 26 26 C 1.53002 * 117.49773 * 8.62596 * 25 10 9 27 27 C 1.53004 * 117.49755 * 300.00405 * 25 10 9 28 28 H 0.97004 * 119.99701 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00089 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47096 * 175.00152 * 12 10 9 31 31 H 1.08994 * 109.47065 * 295.00311 * 12 10 9 32 32 H 0.97000 * 120.00271 * 359.97438 * 13 12 10 33 33 H 1.08996 * 109.47541 * 300.00584 * 18 16 14 34 34 H 1.09001 * 109.46924 * 60.00365 * 18 16 14 35 35 H 1.09003 * 109.46830 * 180.02562 * 19 18 16 36 36 H 1.08993 * 109.47283 * 60.00067 * 19 18 16 37 37 H 1.09001 * 109.47315 * 300.00054 * 20 19 18 38 38 H 1.09000 * 109.46692 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47096 * 299.99762 * 24 16 14 40 40 H 1.08994 * 109.47065 * 59.99920 * 24 16 14 41 41 H 1.08997 * 115.55088 * 154.32896 * 25 10 9 42 42 H 1.08999 * 117.49462 * 359.97438 * 26 25 10 43 43 H 1.08995 * 117.49827 * 145.01947 * 26 25 10 44 44 H 1.08999 * 117.49337 * 214.97339 * 27 25 10 45 45 H 1.08991 * 117.49774 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9683 -3.5503 -0.5917 12 6 1.1803 -4.7519 -0.6112 13 7 0.7329 -4.3346 -1.9422 14 6 -0.0575 -5.1461 -2.6726 15 8 -0.3979 -6.2219 -2.2280 16 6 -0.5183 -4.7166 -4.0417 17 1 -1.0930 -3.7941 -3.9588 18 6 0.6986 -4.4805 -4.9386 19 6 0.2307 -4.0439 -6.3284 20 6 -0.6476 -5.1384 -6.9380 21 6 -1.8643 -5.3744 -6.0411 22 9 -2.6678 -6.3748 -6.5988 23 9 -2.6017 -4.1902 -5.9343 24 6 -1.3958 -5.8117 -4.6512 25 6 2.4229 -4.0363 1.4350 26 6 1.8173 -3.1980 2.5626 27 6 3.3026 -3.0622 2.2212 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 1.7552 -5.6743 -0.6937 31 1 0.3133 -4.9200 0.0275 32 1 1.0048 -3.4740 -2.2977 33 1 1.3241 -3.7006 -4.5044 34 1 1.2733 -5.4030 -5.0214 35 1 1.0977 -3.8761 -6.9674 36 1 -0.3437 -3.1214 -6.2452 37 1 -0.0731 -6.0610 -7.0212 38 1 -0.9805 -4.8275 -7.9282 39 1 -0.8207 -6.7340 -4.7341 40 1 -2.2627 -5.9802 -4.0124 41 1 2.5627 -5.1015 1.6188 42 1 1.1594 -2.3759 2.2809 43 1 1.5587 -3.7117 3.4884 44 1 4.0210 -3.4866 2.9225 45 1 3.6217 -2.1513 1.7149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752482547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:43 Heat of formation + Delta-G solvation = -121.988601 kcal Electronic energy + Delta-G solvation = -27470.331972 eV Core-core repulsion = 23351.611561 eV Total energy + Delta-G solvation = -4118.720410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.05565 -47.04070 -39.93548 -37.85121 -37.00328 -34.54891 -33.29505 -31.66288 -30.87086 -30.04060 -28.10077 -24.60995 -23.49364 -22.93257 -22.38101 -21.51835 -20.58585 -19.88093 -19.06474 -17.86288 -17.23144 -17.00413 -16.52639 -15.97843 -15.68304 -15.36746 -15.03732 -14.74320 -14.62785 -14.17187 -13.92200 -13.73727 -13.43820 -13.36405 -13.24012 -12.93371 -12.89034 -12.78027 -12.36873 -12.07204 -11.99544 -11.42541 -11.31139 -11.21127 -11.09242 -10.96316 -10.89918 -10.87791 -10.56584 -10.53523 -10.18426 -9.74157 -9.62745 -9.43756 -9.19002 -9.01768 -8.67431 -7.11601 -5.87769 -3.18275 2.85440 3.31490 3.36128 3.41680 3.42948 3.68131 4.03492 4.10978 4.23218 4.45962 4.60399 4.63434 4.72463 4.86146 4.99997 5.01459 5.20231 5.29257 5.34409 5.43061 5.52853 5.55550 5.57077 5.68025 5.70826 5.75061 5.81195 5.82611 5.92980 5.94787 6.01979 6.04747 6.06771 6.35756 6.42285 6.61935 6.70711 6.85758 6.97181 7.24941 7.60856 7.86961 8.29212 8.49725 9.41596 9.95055 10.31267 11.33508 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.003587 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.064805 B = 7804.676246 C = 9021.421896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.119 3.881 13 N -0.708 5.708 14 C 0.518 3.482 15 O -0.554 6.554 16 C -0.107 4.107 17 H 0.109 0.891 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.158 4.158 21 C 0.288 3.712 22 F -0.203 7.203 23 F -0.198 7.198 24 C -0.136 4.136 25 C -0.178 4.178 26 C -0.163 4.163 27 C -0.175 4.175 28 H 0.257 0.743 29 H 0.386 0.614 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -10.139 -10.960 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.006 4.006 13 N -0.359 5.359 14 C 0.304 3.696 15 O -0.433 6.433 16 C -0.129 4.129 17 H 0.127 0.873 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.196 4.196 21 C 0.252 3.748 22 F -0.184 7.184 23 F -0.179 7.179 24 C -0.174 4.174 25 C -0.200 4.200 26 C -0.200 4.200 27 C -0.212 4.212 28 H 0.067 0.933 29 H 0.221 0.779 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.543 -10.729 -10.652 15.197 hybrid contribution 0.083 1.376 0.028 1.379 sum 1.625 -9.353 -10.624 14.247 Atomic orbital electron populations 1.69645 1.05032 1.25924 1.56915 1.24703 0.95394 0.97533 1.02656 0.86354 0.78611 0.83841 0.77860 1.21314 1.21773 1.21254 1.19108 0.90856 0.83804 1.43546 0.91132 1.42465 1.05829 0.99455 1.88138 1.19990 0.94052 0.86073 0.91749 0.92539 1.21589 0.98788 0.97389 0.82827 1.45965 1.50318 1.21787 1.17877 1.20251 0.78404 0.84477 0.86479 1.90673 1.57102 1.22847 1.72656 1.21254 0.97999 1.00497 0.93104 0.87267 1.21625 0.96291 1.02877 0.94578 1.21519 0.99767 0.98130 0.96120 1.22546 0.95290 1.02416 0.99379 1.21130 0.84839 0.73533 0.95284 1.93001 1.76418 1.61929 1.87055 1.93009 1.79549 1.48301 1.97038 1.22281 1.02127 1.00042 0.92977 1.23073 1.06017 0.95321 0.95578 1.22903 0.96739 1.03498 0.96844 1.22836 0.93484 1.01868 1.03034 0.93348 0.77925 0.91863 0.91683 0.75243 0.89908 0.90888 0.90005 0.90351 0.88749 0.89498 0.88156 0.88761 0.89657 0.86332 0.91299 0.91040 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.73 13.06 55.49 0.72 -25.01 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -5.85 8.15 -15.06 -0.12 -5.97 16 8 H 0.07 1.68 6.90 -52.48 -0.36 1.32 16 9 N -0.72 -15.36 3.08 -53.42 -0.16 -15.53 16 10 C 0.19 3.38 2.86 -67.93 -0.19 3.18 16 11 H 0.06 1.00 8.08 -51.93 -0.42 0.59 16 12 C 0.12 1.91 5.21 -4.05 -0.02 1.89 16 13 N -0.71 -10.85 5.28 -60.30 -0.32 -11.17 16 14 C 0.52 7.88 7.15 -10.98 -0.08 7.80 16 15 O -0.55 -10.11 15.98 5.56 0.09 -10.02 16 16 C -0.11 -1.29 2.40 -91.77 -0.22 -1.51 16 17 H 0.11 1.37 7.80 -51.93 -0.41 0.96 16 18 C -0.12 -1.10 5.10 -26.73 -0.14 -1.24 16 19 C -0.12 -0.97 5.80 -26.73 -0.16 -1.12 16 20 C -0.16 -1.32 5.45 -26.73 -0.15 -1.46 16 21 C 0.29 3.20 2.10 -26.71 -0.06 3.14 16 22 F -0.20 -2.50 17.06 2.25 0.04 -2.46 16 23 F -0.20 -2.56 16.02 2.25 0.04 -2.52 16 24 C -0.14 -1.59 4.03 -26.70 -0.11 -1.70 16 25 C -0.18 -3.01 5.71 -90.61 -0.52 -3.53 16 26 C -0.16 -2.99 9.74 -26.73 -0.26 -3.25 16 27 C -0.18 -3.05 9.86 -26.73 -0.26 -3.32 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 9.18 7.80 -40.82 -0.32 8.86 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.41 6.31 7.56 -40.82 -0.31 6.00 16 33 H 0.08 0.79 7.56 -51.93 -0.39 0.40 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.71 7.80 -51.93 -0.41 0.30 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.12 2.62 6.68 -51.93 -0.35 2.27 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.99 6.22 -51.93 -0.32 1.67 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -28.10 364.60 -8.56 -36.66 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -7.06 Total: 16.04 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.38 Total: -7.34 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.24 Total: -51.71 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.10 -8.56 -36.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752482547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.333 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds