Wall clock time and date at job start Tue Mar 31 2020 10:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48502 * 109.46894 * 240.00053 * 3 2 1 5 5 H 1.48496 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47267 * 120.00252 * 3 2 1 7 7 C 1.38811 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00382 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46842 * 35.00569 * 10 9 7 12 12 C 1.53002 * 109.47159 * 155.00424 * 10 9 7 13 13 N 1.46505 * 109.47089 * 305.00091 * 12 10 9 14 14 C 1.34770 * 120.00300 * 180.02562 * 13 12 10 15 15 O 1.21288 * 119.99832 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00420 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.47624 * 59.99267 * 16 14 13 18 18 C 1.53002 * 109.47531 * 179.97438 * 16 14 13 19 19 C 1.53000 * 109.47233 * 180.02562 * 18 16 14 20 20 C 1.52997 * 109.47060 * 299.99657 * 19 18 16 21 21 C 1.52999 * 109.47317 * 59.99960 * 20 19 18 22 22 F 1.39895 * 109.47493 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.47109 * 60.00092 * 21 20 19 24 24 C 1.52997 * 109.46989 * 299.99564 * 16 14 13 25 25 C 1.53004 * 109.47522 * 275.00231 * 10 9 7 26 26 C 1.52995 * 117.49615 * 128.74441 * 25 10 9 27 27 C 1.52995 * 117.49497 * 60.08552 * 25 10 9 28 28 H 0.96994 * 120.00041 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99730 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47067 * 185.00212 * 12 10 9 31 31 H 1.08992 * 109.47461 * 64.99910 * 12 10 9 32 32 H 0.97000 * 119.99912 * 359.97438 * 13 12 10 33 33 H 1.08992 * 109.47063 * 59.99724 * 18 16 14 34 34 H 1.09004 * 109.46733 * 299.99437 * 18 16 14 35 35 H 1.09002 * 109.47398 * 59.99826 * 19 18 16 36 36 H 1.09001 * 109.47194 * 180.02562 * 19 18 16 37 37 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47153 * 300.00319 * 20 19 18 39 39 H 1.09002 * 109.47153 * 299.99998 * 24 16 14 40 40 H 1.09001 * 109.47289 * 60.00082 * 24 16 14 41 41 H 1.08997 * 115.54821 * 274.42184 * 25 10 9 42 42 H 1.08997 * 117.50571 * 0.02562 * 26 25 10 43 43 H 1.09001 * 117.49675 * 145.02637 * 26 25 10 44 44 H 1.08998 * 117.49983 * 214.98240 * 27 25 10 45 45 H 1.09005 * 117.49987 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9693 -3.5507 0.5872 12 6 1.1814 -4.7524 0.6081 13 7 0.7357 -4.3364 1.9402 14 6 -0.0527 -5.1489 2.6713 15 8 -0.3937 -6.2244 2.2262 16 6 -0.5116 -4.7207 4.0413 17 1 -1.0871 -3.7986 3.9601 18 6 -1.3883 -5.8164 4.6512 19 6 -1.8547 -5.3813 6.0419 20 6 -0.6370 -5.1451 6.9375 21 6 0.2398 -4.0495 6.3277 22 9 1.3530 -3.8331 7.1469 23 9 -0.4986 -2.8658 6.2229 24 6 0.7065 -4.4844 4.9364 25 6 2.4211 -4.0350 -1.4391 26 6 3.8811 -4.3883 -1.7294 27 6 3.3013 -3.0611 -2.2250 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 1.7564 -5.6749 0.6890 31 1 0.3134 -4.9200 -0.0295 32 1 1.0087 -3.4764 2.2963 33 1 -0.8132 -6.7386 4.7324 34 1 -2.2562 -5.9843 4.0134 35 1 -2.4300 -4.4591 5.9602 36 1 -2.4789 -6.1621 6.4765 37 1 -0.9691 -4.8356 7.9284 38 1 -0.0617 -6.0674 7.0191 39 1 1.2820 -5.4065 5.0177 40 1 1.3307 -3.7036 4.5019 41 1 1.6527 -4.5765 -1.9909 42 1 4.5830 -4.3518 -0.8964 43 1 4.0734 -5.1621 -2.4726 44 1 3.1124 -2.9623 -3.2939 45 1 3.6216 -2.1508 -1.7181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752482548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:48 Heat of formation + Delta-G solvation = -124.591865 kcal Electronic energy + Delta-G solvation = -27513.197517 eV Core-core repulsion = 23394.364221 eV Total energy + Delta-G solvation = -4118.833296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.04580 -47.02856 -39.93082 -37.78853 -36.96238 -34.69727 -33.44183 -31.85342 -30.71796 -30.04822 -28.02447 -24.59569 -23.49912 -22.92471 -22.12807 -21.71347 -20.56293 -19.98953 -19.42437 -17.87326 -17.20862 -16.96767 -16.48950 -16.24263 -15.63928 -15.34677 -15.08765 -14.63403 -14.36825 -14.27027 -13.92463 -13.78052 -13.46941 -13.35436 -13.20162 -13.09055 -12.99951 -12.70560 -12.40658 -12.17969 -11.79639 -11.48737 -11.37072 -11.17305 -11.03051 -10.92145 -10.89806 -10.87046 -10.74835 -10.60047 -10.17614 -9.95994 -9.70666 -9.45491 -9.31187 -9.00316 -8.68073 -7.08223 -5.84304 -3.14151 2.80950 3.37779 3.39872 3.44057 3.45143 3.64976 3.93152 4.13506 4.20178 4.38713 4.57127 4.68487 4.75033 4.83856 4.96997 5.06747 5.16711 5.19337 5.29085 5.44412 5.48684 5.49933 5.57954 5.58993 5.66085 5.68999 5.72439 5.80624 5.87255 5.98405 6.01280 6.04166 6.14521 6.15521 6.36784 6.52038 6.56833 6.74052 6.85576 6.94995 7.61826 7.86479 8.32488 8.49077 9.44783 9.98315 10.34386 11.37404 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004065 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.531479 B = 6885.858836 C = 8295.928035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.118 3.882 13 N -0.710 5.710 14 C 0.518 3.482 15 O -0.551 6.551 16 C -0.107 4.107 17 H 0.109 0.891 18 C -0.102 4.102 19 C -0.120 4.120 20 C -0.158 4.158 21 C 0.292 3.708 22 F -0.202 7.202 23 F -0.195 7.195 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.196 4.196 27 C -0.156 4.156 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -11.866 10.793 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.361 5.361 14 C 0.303 3.697 15 O -0.429 6.429 16 C -0.128 4.128 17 H 0.127 0.873 18 C -0.140 4.140 19 C -0.157 4.157 20 C -0.196 4.196 21 C 0.255 3.745 22 F -0.183 7.183 23 F -0.176 7.176 24 C -0.189 4.189 25 C -0.181 4.181 26 C -0.234 4.234 27 C -0.193 4.193 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.053 -12.416 10.498 16.260 hybrid contribution 0.392 1.676 -0.025 1.721 sum 0.444 -10.741 10.473 15.008 Atomic orbital electron populations 1.69640 1.05067 1.25883 1.57018 1.24713 0.95425 0.97569 1.02699 0.86345 0.78613 0.83810 0.77856 1.21270 1.21732 1.21259 1.19099 0.90777 0.83837 1.43372 0.91207 1.42439 1.05803 0.99384 1.88109 1.20058 0.94329 0.86147 0.91269 0.92735 1.21608 0.98623 0.97518 0.82866 1.46023 1.50420 1.21850 1.17857 1.20260 0.78403 0.84446 0.86553 1.90669 1.56876 1.22715 1.72645 1.21289 0.96904 1.02196 0.92423 0.87277 1.21417 0.99978 0.97407 0.95210 1.21556 0.96435 1.02931 0.94817 1.22547 0.97960 0.98366 1.00754 1.21028 0.79840 0.82764 0.90831 1.93010 1.54837 1.95602 1.74839 1.93027 1.77415 1.50442 1.96740 1.22512 0.98915 1.04834 0.92680 1.23031 0.92161 1.03096 0.99819 1.22959 0.97264 0.99837 1.03350 1.22779 1.03362 0.94030 0.99109 0.93380 0.78051 0.91646 0.91764 0.75278 0.90718 0.90151 0.90634 0.90152 0.89493 0.88742 0.88309 0.88553 0.89159 0.89559 0.90097 0.90228 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.02 8.63 -15.06 -0.13 -6.15 16 8 H 0.07 1.71 6.91 -52.48 -0.36 1.35 16 9 N -0.72 -16.02 4.54 -53.42 -0.24 -16.27 16 10 C 0.19 3.47 2.70 -67.93 -0.18 3.29 16 11 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 12 C 0.12 1.94 5.22 -4.04 -0.02 1.92 16 13 N -0.71 -11.17 5.28 -60.29 -0.32 -11.49 16 14 C 0.52 7.90 7.15 -10.99 -0.08 7.82 16 15 O -0.55 -9.90 15.98 5.55 0.09 -9.81 16 16 C -0.11 -1.29 2.40 -91.78 -0.22 -1.51 16 17 H 0.11 1.37 7.80 -51.93 -0.41 0.97 16 18 C -0.10 -1.06 4.49 -26.73 -0.12 -1.18 16 19 C -0.12 -0.99 5.80 -26.73 -0.16 -1.15 16 20 C -0.16 -1.32 5.45 -26.73 -0.15 -1.47 16 21 C 0.29 3.24 2.10 -26.70 -0.06 3.18 16 22 F -0.20 -2.51 17.06 2.25 0.04 -2.48 16 23 F -0.20 -2.59 16.02 2.25 0.04 -2.55 16 24 C -0.15 -1.66 4.64 -26.70 -0.12 -1.78 16 25 C -0.16 -2.72 5.36 -90.62 -0.49 -3.20 16 26 C -0.20 -2.92 10.18 -26.70 -0.27 -3.19 16 27 C -0.16 -2.72 9.78 -26.70 -0.26 -2.98 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.39 9.48 7.80 -40.82 -0.32 9.16 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.41 6.62 7.55 -40.82 -0.31 6.31 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.07 0.67 7.80 -51.93 -0.41 0.26 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.12 7.56 -51.93 -0.39 0.72 16 41 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 42 H 0.09 1.23 8.05 -51.93 -0.42 0.82 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.10 2.06 6.23 -51.93 -0.32 1.73 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -29.19 367.53 -8.63 -37.81 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -7.12 Total: 15.36 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.35 Total: -6.70 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.16 Total: -53.57 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.19 -8.63 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752482548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.778 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds