Wall clock time and date at job start Tue Mar 31 2020 10:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99645 * 2 1 4 4 H 1.48500 * 109.46680 * 239.99682 * 3 2 1 5 5 H 1.48496 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46904 * 120.00012 * 3 2 1 7 7 C 1.38816 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99676 * 179.97438 * 7 2 1 9 9 N 1.36926 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99782 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47122 * 324.99827 * 10 9 7 12 12 C 1.53002 * 109.47189 * 204.99921 * 10 9 7 13 13 N 1.46505 * 109.47089 * 55.00000 * 12 10 9 14 14 C 1.34780 * 120.00303 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99436 * 359.97438 * 14 13 12 16 16 C 1.50692 * 119.99926 * 180.02562 * 14 13 12 17 17 H 1.08992 * 109.48043 * 59.99425 * 16 14 13 18 18 C 1.53001 * 109.46894 * 299.99081 * 16 14 13 19 19 C 1.53008 * 109.47105 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.46800 * 60.00402 * 19 18 16 21 21 C 1.52997 * 109.47143 * 300.00009 * 20 19 18 22 22 F 1.39905 * 109.47157 * 299.99947 * 21 20 19 23 23 F 1.39900 * 109.47010 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47232 * 59.99957 * 21 20 19 25 25 C 1.52992 * 109.47324 * 85.00078 * 10 9 7 26 26 C 1.53008 * 117.49971 * 8.62087 * 25 10 9 27 27 C 1.52997 * 59.99833 * 252.50882 * 26 25 10 28 28 H 0.97002 * 120.00469 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00508 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47067 * 295.00120 * 12 10 9 31 31 H 1.08992 * 109.47461 * 174.99819 * 12 10 9 32 32 H 0.97006 * 119.99939 * 0.02562 * 13 12 10 33 33 H 1.08992 * 109.47514 * 300.00674 * 18 16 14 34 34 H 1.09001 * 109.47109 * 60.00859 * 18 16 14 35 35 H 1.09000 * 109.47188 * 180.02562 * 19 18 16 36 36 H 1.09002 * 109.47288 * 300.00564 * 19 18 16 37 37 H 1.09004 * 109.46930 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47067 * 60.00027 * 20 19 18 39 39 H 1.09002 * 109.47045 * 59.99942 * 24 21 20 40 40 H 1.09000 * 109.47140 * 179.97438 * 24 21 20 41 41 H 1.08999 * 115.55627 * 154.33024 * 25 10 9 42 42 H 1.08997 * 117.49075 * 0.02562 * 26 25 10 43 43 H 1.09000 * 117.50174 * 145.01918 * 26 25 10 44 44 H 1.08996 * 117.50078 * 252.50461 * 27 26 25 45 45 H 1.09003 * 117.49668 * 107.48814 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9688 -3.5504 -0.5889 12 6 1.1811 -4.7522 -0.6091 13 7 0.7344 -4.3355 -1.9407 14 6 -0.0554 -5.1473 -2.6713 15 8 -0.3960 -6.2230 -2.2264 16 6 -0.5143 -4.7189 -4.0412 17 1 0.3533 -4.5516 -4.6793 18 6 -1.3207 -3.4237 -3.9270 19 6 -1.7872 -2.9890 -5.3179 20 6 -2.6651 -4.0843 -5.9267 21 6 -1.8588 -5.3796 -6.0408 22 9 -0.7454 -5.1651 -6.8603 23 9 -2.6614 -6.3809 -6.5980 24 6 -1.3923 -5.8141 -4.6501 25 6 2.4221 -4.0356 1.4375 26 6 1.8158 -3.1968 2.5644 27 6 3.3012 -3.0612 2.2239 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 0.3135 -4.9201 0.0291 31 1 1.7559 -5.6745 -0.6908 32 1 1.0071 -3.4753 -2.2967 33 1 -2.1884 -3.5909 -3.2889 34 1 -0.6954 -2.6435 -3.4929 35 1 -2.3613 -2.0660 -5.2366 36 1 -0.9197 -2.8219 -5.9563 37 1 -2.9979 -3.7745 -6.9174 38 1 -3.5326 -4.2514 -5.2882 39 1 -2.2598 -5.9813 -4.0116 40 1 -0.8182 -6.7372 -4.7313 41 1 2.5620 -5.1007 1.6219 42 1 1.1573 -2.3754 2.2819 43 1 1.5564 -3.7101 3.4903 44 1 4.0192 -3.4852 2.9259 45 1 3.6203 -2.1502 1.7176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752482549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:52 Heat of formation + Delta-G solvation = -122.337140 kcal Electronic energy + Delta-G solvation = -27556.467504 eV Core-core repulsion = 23437.731980 eV Total energy + Delta-G solvation = -4118.735524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.06197 -47.04679 -39.91984 -37.84342 -36.96359 -34.54914 -33.30416 -31.63015 -30.86057 -29.99003 -28.09542 -24.58855 -23.49981 -22.86183 -22.37529 -21.52033 -20.55369 -19.87524 -19.05211 -17.85734 -17.25564 -16.98131 -16.49977 -15.96098 -15.66660 -15.38703 -14.99926 -14.76344 -14.50070 -14.17197 -13.93625 -13.73653 -13.44823 -13.37193 -13.18340 -12.91949 -12.88678 -12.73262 -12.32709 -12.05421 -11.97194 -11.39674 -11.30618 -11.20906 -11.01659 -10.92933 -10.89327 -10.83265 -10.56572 -10.49513 -10.19436 -9.74949 -9.62559 -9.43784 -9.19198 -9.02762 -8.67447 -7.12701 -5.89385 -3.19435 2.85342 3.32315 3.35525 3.40868 3.42065 3.70767 4.05537 4.15598 4.25630 4.45107 4.59995 4.68742 4.79147 4.93251 5.04765 5.07269 5.24462 5.31670 5.35200 5.42118 5.53545 5.61899 5.64311 5.70857 5.73618 5.80909 5.81452 5.90676 5.94218 6.01278 6.04472 6.08331 6.18587 6.35482 6.42097 6.61535 6.70512 6.85627 6.96867 7.24000 7.60131 7.86969 8.27761 8.49826 9.40409 9.93597 10.30255 11.31863 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.003689 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.601803 B = 7588.860120 C = 9015.058794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.119 3.881 13 N -0.709 5.709 14 C 0.518 3.482 15 O -0.554 6.554 16 C -0.105 4.105 17 H 0.104 0.896 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.159 4.159 21 C 0.289 3.711 22 F -0.200 7.200 23 F -0.203 7.203 24 C -0.136 4.136 25 C -0.178 4.178 26 C -0.163 4.163 27 C -0.175 4.175 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -7.997 -8.879 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.006 4.006 13 N -0.360 5.360 14 C 0.303 3.697 15 O -0.433 6.433 16 C -0.126 4.126 17 H 0.122 0.878 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.197 4.197 21 C 0.253 3.747 22 F -0.181 7.181 23 F -0.184 7.184 24 C -0.174 4.174 25 C -0.200 4.200 26 C -0.200 4.200 27 C -0.212 4.212 28 H 0.066 0.934 29 H 0.221 0.779 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.248 0.752 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.451 -8.614 -8.597 12.414 hybrid contribution 0.388 1.219 -0.119 1.285 sum -2.063 -7.395 -8.715 11.614 Atomic orbital electron populations 1.69638 1.04994 1.25867 1.57087 1.24684 0.95396 0.97470 1.02692 0.86363 0.78636 0.83850 0.77890 1.21316 1.21785 1.21264 1.19117 0.90882 0.83810 1.43376 0.91149 1.42452 1.05806 0.99441 1.88139 1.19992 0.94094 0.86072 0.91744 0.92522 1.21589 0.98785 0.97411 0.82798 1.45970 1.50321 1.21816 1.17863 1.20276 0.78395 0.84414 0.86585 1.90674 1.57252 1.22828 1.72537 1.21237 1.00019 0.96230 0.95123 0.87780 1.21647 1.00780 0.95656 0.97497 1.21506 0.99923 0.97685 0.96268 1.22561 0.99653 0.93369 1.04099 1.21134 0.79049 0.87278 0.87264 1.92988 1.54555 1.95239 1.75359 1.92999 1.74219 1.63886 1.87313 1.22276 1.02575 0.99839 0.92756 1.23066 1.06023 0.95332 0.95552 1.22899 0.96732 1.03489 0.96846 1.22836 0.93487 1.01871 1.03028 0.93400 0.77932 0.91666 0.91883 0.75249 0.90668 0.89259 0.89823 0.90670 0.89558 0.88655 0.88049 0.88933 0.89654 0.86337 0.91314 0.91034 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.13 13.06 55.49 0.72 -24.41 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -5.76 8.15 -15.06 -0.12 -5.88 16 8 H 0.07 1.67 6.91 -52.48 -0.36 1.31 16 9 N -0.72 -15.11 3.08 -53.43 -0.16 -15.27 16 10 C 0.19 3.36 2.86 -67.93 -0.19 3.17 16 11 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 12 C 0.12 1.91 5.22 -4.04 -0.02 1.89 16 13 N -0.71 -10.83 5.28 -60.29 -0.32 -11.15 16 14 C 0.52 7.87 7.15 -10.99 -0.08 7.79 16 15 O -0.55 -10.11 15.98 5.55 0.09 -10.02 16 16 C -0.10 -1.26 2.41 -91.77 -0.22 -1.48 16 17 H 0.10 1.16 7.80 -51.93 -0.41 0.76 16 18 C -0.12 -1.33 5.10 -26.73 -0.14 -1.47 16 19 C -0.12 -1.10 5.80 -26.73 -0.16 -1.25 16 20 C -0.16 -1.45 5.45 -26.73 -0.15 -1.60 16 21 C 0.29 3.22 2.10 -26.73 -0.06 3.16 16 22 F -0.20 -2.46 16.03 2.25 0.04 -2.43 16 23 F -0.20 -2.51 17.06 2.25 0.04 -2.47 16 24 C -0.14 -1.60 4.02 -26.73 -0.11 -1.71 16 25 C -0.18 -3.00 5.71 -90.62 -0.52 -3.52 16 26 C -0.16 -2.96 9.74 -26.73 -0.26 -3.22 16 27 C -0.18 -3.04 9.86 -26.73 -0.26 -3.31 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 8.95 7.80 -40.82 -0.32 8.63 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.41 6.28 7.56 -40.82 -0.31 5.98 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.12 7.56 -51.93 -0.39 0.72 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.71 7.80 -51.93 -0.41 0.30 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.12 2.59 6.68 -51.93 -0.35 2.24 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.99 6.23 -51.93 -0.32 1.67 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -27.29 364.61 -8.56 -35.86 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -7.06 Total: 16.41 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.38 Total: -7.66 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.24 Total: -50.83 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.07 Total: -4.90 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.29 -8.56 -35.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752482549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.481 kcal (2) G-P(sol) polarization free energy of solvation -27.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds