Wall clock time and date at job start Tue Mar 31 2020 11:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39902 * 109.47542 * 2 1 4 4 F 1.39901 * 109.46989 * 120.00274 * 2 1 3 5 5 C 1.53006 * 109.47170 * 239.99731 * 2 1 3 6 6 C 1.50694 * 115.54918 * 27.83205 * 5 2 1 7 7 O 1.21279 * 120.00004 * 253.67082 * 6 5 2 8 8 N 1.34776 * 120.00201 * 73.67022 * 6 5 2 9 9 C 1.46931 * 120.63085 * 355.35367 * 8 6 5 10 10 C 1.53196 * 108.77494 * 126.36614 * 9 8 6 11 11 C 1.53045 * 109.30849 * 54.63722 * 10 9 8 12 12 C 1.53034 * 109.53935 * 298.63374 * 11 10 9 13 13 H 1.08997 * 109.50251 * 301.41392 * 12 11 10 14 14 C 1.53008 * 109.49807 * 181.34805 * 12 11 10 15 15 N 1.46505 * 109.46887 * 64.99779 * 14 12 11 16 16 C 1.36930 * 119.99586 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00475 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99730 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00096 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00171 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46999 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47673 * 119.99867 * 20 18 16 23 23 H 1.48509 * 109.47044 * 239.99974 * 20 18 16 24 24 C 1.46924 * 120.63344 * 175.07999 * 8 6 5 25 25 C 1.52993 * 117.49923 * 242.12007 * 5 2 1 26 26 C 1.52995 * 60.00336 * 252.51148 * 25 5 2 27 27 H 1.09005 * 109.47464 * 174.80497 * 1 2 3 28 28 H 1.08997 * 109.46821 * 54.80897 * 1 2 3 29 29 H 1.08997 * 109.46983 * 294.81187 * 1 2 3 30 30 H 1.08995 * 109.59099 * 246.16004 * 9 8 6 31 31 H 1.09007 * 109.58385 * 6.44105 * 9 8 6 32 32 H 1.08993 * 109.49699 * 174.58791 * 10 9 8 33 33 H 1.08994 * 109.49877 * 294.65919 * 10 9 8 34 34 H 1.09004 * 109.45674 * 58.65756 * 11 10 9 35 35 H 1.09003 * 109.46029 * 178.62409 * 11 10 9 36 36 H 1.08999 * 109.47293 * 185.00448 * 14 12 11 37 37 H 1.09001 * 109.46888 * 305.00286 * 14 12 11 38 38 H 0.96993 * 119.99693 * 0.02562 * 15 14 12 39 39 H 0.96999 * 120.00065 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.58552 * 353.41650 * 24 8 6 41 41 H 1.08998 * 109.59143 * 113.84525 * 24 8 6 42 42 H 1.09000 * 117.50219 * 0.02562 * 25 5 2 43 43 H 1.09004 * 117.49836 * 145.01847 * 25 5 2 44 44 H 1.08994 * 117.50162 * 252.51151 * 26 25 5 45 45 H 1.09006 * 117.49892 * 107.48992 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9962 -0.6596 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 1.1231 -0.6784 -2.4444 7 8 0.5054 -1.6698 -2.7707 8 7 0.9894 0.4617 -3.1506 9 6 1.6507 1.6974 -2.7096 10 6 2.4871 2.2495 -3.8683 11 6 1.5952 2.4192 -5.1004 12 6 1.0327 1.0581 -5.5164 13 1 1.8545 0.3745 -5.7296 14 6 0.1683 1.2236 -6.7680 15 7 1.0085 1.6543 -7.8882 16 6 0.4499 1.8690 -9.1199 17 1 -0.6100 1.7211 -9.2654 18 6 1.2461 2.2765 -10.1815 19 7 2.5377 2.4572 -10.0040 20 14 0.4841 2.5700 -11.8615 21 1 -0.9746 2.2995 -11.7975 22 1 0.7091 3.9805 -12.2676 23 1 1.1123 1.6626 -12.8553 24 6 0.1844 0.4911 -4.3794 25 6 2.8737 -1.9874 -1.0430 26 6 3.5468 -0.6966 -1.5136 27 1 -0.3634 -1.0235 -0.0931 28 1 -0.3633 0.5922 -0.8398 29 1 -0.3633 0.4312 0.9328 30 1 0.8985 2.4310 -2.4198 31 1 2.2978 1.4820 -1.8592 32 1 2.9059 3.2155 -3.5866 33 1 3.2955 1.5551 -4.0967 34 1 0.7732 3.0948 -4.8634 35 1 2.1823 2.8349 -5.9192 36 1 -0.3034 0.2718 -7.0123 37 1 -0.6010 1.9731 -6.5817 38 1 1.9603 1.7874 -7.7574 39 1 3.0940 2.7423 -10.7457 40 1 -0.1337 -0.5203 -4.6321 41 1 -0.6898 1.1244 -4.2286 42 1 3.0586 -2.3068 -0.0174 43 1 2.7590 -2.7899 -1.7718 44 1 3.8748 -0.6496 -2.5519 45 1 4.1748 -0.1664 -0.7975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752806862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:29 Heat of formation + Delta-G solvation = -99.946783 kcal Electronic energy + Delta-G solvation = -28068.579061 eV Core-core repulsion = 23950.814455 eV Total energy + Delta-G solvation = -4117.764606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.48131 -47.44944 -40.67103 -38.12680 -36.69609 -34.97864 -32.81103 -31.82592 -31.71543 -29.97792 -26.25578 -25.58585 -24.67687 -23.15085 -22.94931 -22.39387 -21.61267 -19.89395 -18.83680 -18.19974 -17.79068 -17.09139 -16.72990 -16.41269 -15.94344 -15.19649 -14.96008 -14.50867 -14.44689 -14.25390 -14.19079 -13.79024 -13.70465 -13.61145 -13.34625 -12.97761 -12.93321 -12.80760 -12.69609 -12.44793 -12.13504 -12.00291 -11.91920 -11.77557 -11.13996 -10.97183 -10.92342 -10.84671 -10.79436 -10.59777 -10.35448 -10.20060 -10.04968 -9.85685 -9.69213 -8.88989 -8.68277 -6.92438 -5.77472 -3.05800 2.21402 2.66824 3.02436 3.31009 3.42964 3.48850 3.50935 3.68585 3.79472 4.14891 4.15277 4.48917 4.55252 4.59074 4.82507 4.97586 5.01308 5.09523 5.14231 5.18092 5.21403 5.26981 5.36188 5.48167 5.49716 5.53889 5.56392 5.61331 5.68086 5.81751 5.88387 5.95442 6.04210 6.16981 6.18760 6.44856 6.47806 6.64875 6.77320 6.86779 7.25034 7.70249 7.95133 8.41541 9.52926 10.10484 10.45290 11.45551 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029669 B = 0.002867 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.509370 B = 9762.988540 C = 9877.974433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.335 3.665 3 F -0.189 7.189 4 F -0.191 7.191 5 C -0.223 4.223 6 C 0.559 3.441 7 O -0.529 6.529 8 N -0.598 5.598 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.112 4.112 12 C -0.106 4.106 13 H 0.073 0.927 14 C 0.160 3.840 15 N -0.730 5.730 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.118 3.882 25 C -0.124 4.124 26 C -0.143 4.143 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 -3.813 24.118 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.298 3.702 3 F -0.169 7.169 4 F -0.172 7.172 5 C -0.227 4.227 6 C 0.344 3.656 7 O -0.405 6.405 8 N -0.330 5.330 9 C -0.034 4.034 10 C -0.172 4.172 11 C -0.150 4.150 12 C -0.126 4.126 13 H 0.091 0.909 14 C 0.032 3.968 15 N -0.375 5.375 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.004 4.004 25 C -0.161 4.161 26 C -0.180 4.180 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.218 0.782 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.230 -4.303 23.833 24.220 hybrid contribution 0.081 0.492 -0.886 1.016 sum -0.149 -3.811 22.948 23.262 Atomic orbital electron populations 1.22819 0.90647 1.06321 1.05571 1.19984 0.93819 0.74832 0.81550 1.92951 1.90586 1.37293 1.96111 1.93007 1.90579 1.80913 1.52710 1.22434 0.96192 1.08139 0.95917 1.18886 0.81252 0.82982 0.82439 1.90720 1.46212 1.34380 1.69213 1.48097 1.49945 1.09439 1.25506 1.22256 0.96969 0.85694 0.98467 1.21928 0.98499 1.01288 0.95444 1.21544 0.99317 0.96814 0.97284 1.21591 0.99004 0.97276 0.94711 0.90863 1.20581 0.92902 0.96954 0.86354 1.42343 1.07662 1.81648 1.05837 1.19280 0.93140 1.37738 0.86741 0.91132 1.24736 0.95592 1.02538 0.98187 1.69668 1.03799 1.53664 1.31140 0.86116 0.78188 0.77414 0.84477 1.20551 1.21887 1.21889 1.21627 0.93098 1.03079 0.82584 1.23152 0.97625 0.90791 1.04515 1.23190 0.89634 1.00858 1.04366 0.88582 0.89086 0.89403 0.91233 0.88330 0.90749 0.91613 0.92029 0.90181 0.96195 0.96137 0.78220 0.93592 0.88950 0.91174 0.86655 0.86777 0.86965 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 8.46 37.15 0.31 -1.35 16 2 C 0.33 3.16 2.08 -26.73 -0.06 3.11 16 3 F -0.19 -1.82 14.16 2.25 0.03 -1.79 16 4 F -0.19 -1.87 15.62 2.25 0.04 -1.84 16 5 C -0.22 -2.26 1.13 -155.66 -0.18 -2.44 16 6 C 0.56 7.17 5.12 -10.99 -0.06 7.11 16 7 O -0.53 -8.50 16.34 5.56 0.09 -8.41 16 8 N -0.60 -7.33 2.87 -173.03 -0.50 -7.83 16 9 C 0.09 0.93 5.76 -3.71 -0.02 0.91 16 10 C -0.13 -1.53 6.08 -26.61 -0.16 -1.70 16 11 C -0.11 -1.63 5.06 -26.69 -0.13 -1.76 16 12 C -0.11 -1.68 2.36 -90.72 -0.21 -1.90 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.16 3.17 5.66 -4.03 -0.02 3.15 16 15 N -0.73 -18.29 5.32 -59.90 -0.32 -18.61 16 16 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C 0.12 1.63 5.68 -3.93 -0.02 1.60 16 25 C -0.12 -1.10 9.48 -26.74 -0.25 -1.35 16 26 C -0.14 -1.23 8.94 -26.73 -0.24 -1.46 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.81 7.36 -51.93 -0.38 0.43 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.95 3.22 -51.93 -0.17 0.78 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.39 7.15 -51.93 -0.37 1.02 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.38 10.05 6.85 -40.82 -0.28 9.77 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 40 H 0.09 1.39 7.04 -51.93 -0.37 1.03 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.12 0.88 7.18 -51.93 -0.37 0.51 16 43 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -31.66 360.30 -7.80 -39.46 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.98 Total: 6.96 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.29 Total: -3.40 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.09 Total: -53.83 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.66 -7.80 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.489 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds