Wall clock time and date at job start Tue Mar 31 2020 11:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39894 * 109.47389 * 2 1 4 4 F 1.39905 * 109.47521 * 239.99628 * 2 1 3 5 5 C 1.53004 * 109.47162 * 120.00049 * 2 1 3 6 6 C 1.50704 * 115.54507 * 303.98583 * 5 2 1 7 7 O 1.21277 * 119.99989 * 109.79573 * 6 5 2 8 8 N 1.34781 * 119.99786 * 289.51034 * 6 5 2 9 9 C 1.46928 * 120.63244 * 354.36921 * 8 6 5 10 10 C 1.52754 * 109.00933 * 233.58287 * 9 8 6 11 11 C 1.53049 * 109.38318 * 305.58609 * 10 9 8 12 12 C 1.53043 * 109.53699 * 61.23904 * 11 10 9 13 13 H 1.08996 * 109.49803 * 58.58481 * 12 11 10 14 14 C 1.52999 * 109.52298 * 178.67228 * 12 11 10 15 15 N 1.46501 * 109.46631 * 294.85159 * 14 12 11 16 16 C 1.36944 * 119.99320 * 180.02562 * 15 14 12 17 17 H 1.07988 * 120.00356 * 0.02562 * 16 15 14 18 18 C 1.38821 * 119.99399 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99970 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99455 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47091 * 90.00576 * 20 18 16 22 22 H 1.48501 * 109.46749 * 209.99972 * 20 18 16 23 23 H 1.48491 * 109.47423 * 330.00149 * 20 18 16 24 24 C 1.46926 * 120.62772 * 174.64416 * 8 6 5 25 25 C 1.52993 * 117.50081 * 89.64857 * 5 2 1 26 26 C 1.52995 * 117.50024 * 158.31430 * 5 2 1 27 27 H 1.08994 * 109.47401 * 305.40441 * 1 2 3 28 28 H 1.09003 * 109.46881 * 65.40328 * 1 2 3 29 29 H 1.09004 * 109.47456 * 185.40170 * 1 2 3 30 30 H 1.09006 * 109.58134 * 353.41482 * 9 8 6 31 31 H 1.08993 * 109.58864 * 113.83540 * 9 8 6 32 32 H 1.09000 * 109.57045 * 185.55029 * 10 9 8 33 33 H 1.09003 * 109.36463 * 65.49487 * 10 9 8 34 34 H 1.08995 * 109.45803 * 301.22370 * 11 10 9 35 35 H 1.08991 * 109.46462 * 181.26119 * 11 10 9 36 36 H 1.08991 * 109.47158 * 54.85498 * 14 12 11 37 37 H 1.09000 * 109.46802 * 174.85650 * 14 12 11 38 38 H 0.96992 * 120.00355 * 0.02562 * 15 14 12 39 39 H 0.96996 * 119.99434 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.58278 * 246.15714 * 24 8 6 41 41 H 1.08991 * 109.58756 * 6.44092 * 24 8 6 42 42 H 1.09001 * 117.50382 * 215.00042 * 25 5 2 43 43 H 1.09004 * 117.50181 * 0.02936 * 25 5 2 44 44 H 1.08997 * 117.50386 * 359.97438 * 26 5 2 45 45 H 1.09005 * 117.49786 * 144.99981 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7213 1.2493 6 6 1.5400 -0.1779 2.5630 7 8 0.7541 -0.8214 3.2257 8 7 1.9707 1.0206 3.0043 9 6 3.0182 1.7529 2.2794 10 6 4.1422 2.1057 3.2517 11 6 3.5600 2.8613 4.4486 12 6 2.5520 1.9687 5.1763 13 1 3.0462 1.0542 5.5041 14 6 1.9948 2.7122 6.3918 15 7 3.0711 2.9431 7.3585 16 6 2.8078 3.5958 8.5333 17 1 1.8069 3.9398 8.7472 18 6 3.8278 3.8150 9.4490 19 7 5.0478 3.3952 9.1884 20 14 3.4686 4.7047 11.0518 21 1 3.0847 3.7161 12.0914 22 1 4.6811 5.4403 11.4921 23 1 2.3545 5.6647 10.8462 24 6 1.4060 1.6168 4.2226 25 6 2.2676 -2.2309 1.1500 26 6 3.4644 -1.2784 1.2113 27 1 -0.3634 0.5953 0.8376 28 1 -0.3633 0.4278 -0.9345 29 1 -0.3634 -1.0231 0.0967 30 1 3.4128 1.1282 1.4780 31 1 2.6006 2.6682 1.8602 32 1 4.8772 2.7334 2.7478 33 1 4.6215 1.1899 3.5978 34 1 3.0595 3.7644 4.0994 35 1 4.3640 3.1333 5.1324 36 1 1.5804 3.6689 6.0740 37 1 1.2116 2.1132 6.8564 38 1 3.9701 2.6337 7.1665 39 1 5.7605 3.5488 9.8282 40 1 0.8543 2.5209 3.9650 41 1 0.7353 0.9035 4.7014 42 1 2.0560 -2.8312 2.0348 43 1 2.0545 -2.7103 0.1945 44 1 4.0381 -1.1315 0.2963 45 1 4.0399 -1.2520 2.1366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752806863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:32 Heat of formation + Delta-G solvation = -100.785670 kcal Electronic energy + Delta-G solvation = -28041.994166 eV Core-core repulsion = 23924.193183 eV Total energy + Delta-G solvation = -4117.800982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.42761 -47.40763 -40.60764 -38.13329 -36.69902 -34.95600 -32.74793 -31.80872 -31.62450 -29.97348 -26.36578 -25.56427 -24.66467 -23.08966 -22.97441 -22.32469 -21.59975 -19.91157 -18.81521 -18.17566 -17.76603 -17.07581 -16.70684 -16.33185 -15.86436 -15.09214 -14.99276 -14.53276 -14.33392 -14.20675 -14.08026 -13.76735 -13.69775 -13.60917 -13.44638 -13.05083 -12.90748 -12.81309 -12.62392 -12.46113 -12.14271 -12.04190 -11.94083 -11.76293 -11.09110 -11.01712 -10.91144 -10.82165 -10.72890 -10.53766 -10.34616 -10.18591 -10.05961 -9.84481 -9.67507 -8.86902 -8.63706 -6.90948 -5.76014 -3.04276 2.22059 2.69657 3.04154 3.30808 3.44364 3.49478 3.51018 3.69820 3.86347 4.13022 4.15243 4.49051 4.56157 4.60209 4.84544 4.98332 5.05586 5.09766 5.15152 5.18267 5.19943 5.29314 5.40916 5.45488 5.49856 5.55044 5.57661 5.64462 5.66728 5.83791 5.91061 5.98497 6.06562 6.19015 6.20976 6.47167 6.50495 6.66788 6.79358 6.89342 7.28272 7.71082 7.97574 8.43115 9.54321 10.12136 10.46953 11.47007 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029959 B = 0.002853 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.395302 B = 9812.307470 C = 9913.994094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.334 3.666 3 F -0.189 7.189 4 F -0.193 7.193 5 C -0.220 4.220 6 C 0.556 3.444 7 O -0.529 6.529 8 N -0.596 5.596 9 C 0.105 3.895 10 C -0.137 4.137 11 C -0.112 4.112 12 C -0.106 4.106 13 H 0.073 0.927 14 C 0.160 3.840 15 N -0.730 5.730 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.118 3.882 25 C -0.123 4.123 26 C -0.147 4.147 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -8.314 -23.383 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.298 3.702 3 F -0.170 7.170 4 F -0.174 7.174 5 C -0.224 4.224 6 C 0.342 3.658 7 O -0.406 6.406 8 N -0.328 5.328 9 C -0.017 4.017 10 C -0.175 4.175 11 C -0.149 4.149 12 C -0.125 4.125 13 H 0.092 0.908 14 C 0.032 3.968 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.004 4.004 25 C -0.160 4.160 26 C -0.184 4.184 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.218 0.782 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.729 -8.522 -22.922 25.117 hybrid contribution 0.365 0.617 0.754 1.040 sum -5.365 -7.904 -22.169 24.139 Atomic orbital electron populations 1.22722 0.90611 1.06076 1.05345 1.20033 0.93851 0.75063 0.81299 1.93034 1.90359 1.37057 1.96567 1.93010 1.90635 1.81022 1.52747 1.22365 1.05124 1.00535 0.94350 1.18888 0.81136 0.80871 0.84903 1.90717 1.35076 1.57600 1.57177 1.48046 1.38922 1.18922 1.26863 1.21981 0.88147 0.97068 0.94508 1.21914 0.97351 1.01150 0.97093 1.21538 0.99448 0.97644 0.96294 1.21658 0.95804 0.99675 0.95370 0.90816 1.20582 0.91942 0.95969 0.88317 1.42340 1.07433 1.69529 1.18185 1.19240 0.94700 1.28568 0.94445 0.91186 1.24736 0.95554 1.01824 0.98924 1.69659 1.00190 1.51934 1.36517 0.86182 0.76884 0.79226 0.83869 1.21744 1.21799 1.20766 1.21721 0.96213 0.98435 0.84063 1.23115 0.99430 0.88267 1.05199 1.23224 0.88881 1.01071 1.05180 0.89249 0.89626 0.88789 0.89466 0.90980 0.90699 0.91717 0.92010 0.90203 0.96147 0.96199 0.78222 0.93551 0.91153 0.88916 0.86686 0.86945 0.86945 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 9.05 37.15 0.34 -1.20 16 2 C 0.33 3.13 2.09 -26.73 -0.06 3.07 16 3 F -0.19 -1.94 13.38 2.25 0.03 -1.91 16 4 F -0.19 -1.81 15.64 2.25 0.04 -1.77 16 5 C -0.22 -2.20 0.85 -155.66 -0.13 -2.33 16 6 C 0.56 7.29 6.00 -10.98 -0.07 7.22 16 7 O -0.53 -8.60 16.24 5.56 0.09 -8.51 16 8 N -0.60 -7.61 2.98 -173.03 -0.52 -8.12 16 9 C 0.11 1.16 4.56 -3.93 -0.02 1.14 16 10 C -0.14 -1.63 6.06 -26.83 -0.16 -1.79 16 11 C -0.11 -1.67 5.06 -26.68 -0.14 -1.80 16 12 C -0.11 -1.71 2.37 -90.50 -0.21 -1.93 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 15 N -0.73 -18.48 5.32 -59.91 -0.32 -18.80 16 16 C -0.24 -6.71 9.99 -15.05 -0.15 -6.86 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 20 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.12 1.67 5.73 -3.71 -0.02 1.65 16 25 C -0.12 -1.03 9.50 -26.69 -0.25 -1.29 16 26 C -0.15 -1.22 8.41 -26.69 -0.22 -1.44 16 27 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.87 4.19 -51.93 -0.22 0.65 16 31 H 0.07 0.77 7.79 -51.93 -0.40 0.36 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.41 7.16 -51.93 -0.37 1.04 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 10.15 6.86 -40.82 -0.28 9.87 16 39 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.43 7.00 -51.93 -0.36 1.06 16 42 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 43 H 0.11 0.76 7.66 -51.93 -0.40 0.37 16 44 H 0.11 0.80 7.90 -51.93 -0.41 0.39 16 45 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -31.99 360.17 -7.80 -39.79 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.04 Total: 6.82 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.22 Total: -2.88 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.11 Total: -54.49 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.68 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.99 -7.80 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.993 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds