Wall clock time and date at job start Tue Mar 31 2020 11:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39893 * 109.47158 * 2 1 4 4 F 1.39903 * 109.46713 * 239.99970 * 2 1 3 5 5 C 1.52999 * 109.46884 * 120.00215 * 2 1 3 6 6 C 1.50699 * 115.55342 * 297.10272 * 5 2 1 7 7 O 1.21281 * 120.00054 * 98.80074 * 6 5 2 8 8 N 1.34778 * 119.99769 * 278.80404 * 6 5 2 9 9 C 1.46504 * 119.99992 * 184.61060 * 8 6 5 10 10 C 1.52994 * 109.47169 * 174.11903 * 9 8 6 11 11 H 1.09003 * 109.70411 * 55.23967 * 10 9 8 12 12 C 1.53626 * 109.66323 * 175.83279 * 10 9 8 13 13 C 1.53046 * 109.24241 * 174.54861 * 12 10 9 14 14 C 1.53042 * 109.53752 * 298.51353 * 13 12 10 15 15 C 1.53185 * 109.31433 * 61.36126 * 14 13 12 16 16 N 1.46922 * 109.58618 * 294.88589 * 10 9 8 17 17 C 1.36938 * 120.63206 * 6.62347 * 16 10 9 18 18 H 1.08004 * 119.99465 * 30.30106 * 17 16 10 19 19 C 1.38811 * 120.00099 * 210.29300 * 17 16 10 20 20 N 1.31616 * 119.99947 * 28.24832 * 19 17 16 21 21 Si 1.86802 * 119.99864 * 208.24306 * 19 17 16 22 22 H 1.48493 * 109.47342 * 275.08237 * 21 19 17 23 23 H 1.48499 * 109.46939 * 35.08212 * 21 19 17 24 24 H 1.48497 * 109.46884 * 155.07769 * 21 19 17 25 25 C 1.53007 * 117.51812 * 82.80706 * 5 2 1 26 26 C 1.53004 * 59.99937 * 107.47977 * 25 5 2 27 27 H 1.09005 * 109.47218 * 305.24358 * 1 2 3 28 28 H 1.08996 * 109.47515 * 65.24674 * 1 2 3 29 29 H 1.09004 * 109.47338 * 185.24975 * 1 2 3 30 30 H 0.96999 * 120.00274 * 4.60958 * 8 6 5 31 31 H 1.08992 * 109.46969 * 54.11746 * 9 8 6 32 32 H 1.09007 * 109.47010 * 294.11732 * 9 8 6 33 33 H 1.08999 * 109.63847 * 54.55879 * 12 10 9 34 34 H 1.09003 * 109.45704 * 294.42864 * 12 10 9 35 35 H 1.08994 * 109.46145 * 178.49083 * 13 12 10 36 36 H 1.09003 * 109.44616 * 58.52147 * 13 12 10 37 37 H 1.08997 * 109.49421 * 301.41232 * 14 13 12 38 38 H 1.08996 * 109.52111 * 181.33328 * 14 13 12 39 39 H 1.08996 * 109.58811 * 185.57853 * 15 14 13 40 40 H 1.09002 * 109.70639 * 65.22181 * 15 14 13 41 41 H 0.97005 * 120.00103 * 3.94933 * 20 19 17 42 42 H 1.08997 * 117.49606 * 214.96641 * 25 5 2 43 43 H 1.08990 * 117.49880 * 359.97438 * 25 5 2 44 44 H 1.09000 * 117.49270 * 252.51109 * 26 25 5 45 45 H 1.09001 * 117.50148 * 107.49363 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9962 -0.6595 -1.1423 5 6 2.0399 -0.7213 1.2492 6 6 1.6726 -0.0829 2.5639 7 8 0.7317 -0.5060 3.2016 8 7 2.3896 0.9584 3.0310 9 6 2.0971 1.5143 4.3546 10 6 3.1388 2.5796 4.7019 11 1 3.1683 3.3347 3.9163 12 6 2.7772 3.2387 6.0417 13 6 3.8939 4.2038 6.4465 14 6 5.2002 3.4276 6.6289 15 6 5.5879 2.7692 5.3012 16 7 4.4608 1.9519 4.8316 17 6 4.6404 0.6316 4.5156 18 1 4.0301 0.1712 3.7527 19 6 5.6068 -0.1148 5.1757 20 7 5.9536 0.1985 6.4061 21 14 6.4149 -1.5641 4.3177 22 1 5.5686 -2.7728 4.4845 23 1 6.5664 -1.2615 2.8718 24 1 7.7522 -1.8098 4.9148 25 6 2.1154 -2.2488 1.2023 26 6 3.3992 -1.4177 1.1575 27 1 -0.3634 0.5930 0.8393 28 1 -0.3634 0.4303 -0.9332 29 1 -0.3634 -1.0234 0.0940 30 1 3.0994 1.3397 2.4910 31 1 2.1296 0.7182 5.0983 32 1 1.1046 1.9651 4.3480 33 1 2.6634 2.4721 6.8081 34 1 1.8421 3.7885 5.9352 35 1 3.6286 4.6935 7.3835 36 1 4.0238 4.9555 5.6679 37 1 5.0635 2.6592 7.3898 38 1 5.9898 4.1115 6.9402 39 1 6.4622 2.1354 5.4493 40 1 5.8147 3.5378 4.5623 41 1 5.4941 0.9144 6.8722 42 1 1.8993 -2.7918 2.1223 43 1 1.8013 -2.7401 0.2815 44 1 3.9299 -1.3623 0.2070 45 1 4.0278 -1.4140 2.0480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752822378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:51 Heat of formation + Delta-G solvation = -93.517165 kcal Electronic energy + Delta-G solvation = -28982.805521 eV Core-core repulsion = 24865.319725 eV Total energy + Delta-G solvation = -4117.485796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.04527 -47.04069 -39.83265 -38.06076 -36.41601 -34.38448 -33.17610 -31.34471 -30.89917 -29.76178 -26.49944 -25.15942 -24.17294 -22.53868 -22.19419 -22.05648 -20.70872 -19.72059 -19.27066 -17.99075 -17.40043 -16.77518 -16.32491 -15.78451 -15.50980 -15.34267 -14.59289 -14.31359 -13.88517 -13.81842 -13.75067 -13.51261 -13.47582 -13.30585 -13.09355 -12.90667 -12.62342 -12.43009 -12.35209 -12.26985 -11.72413 -11.66305 -11.50983 -11.34847 -10.84052 -10.82072 -10.61445 -10.41507 -10.37535 -10.33953 -10.10037 -9.91820 -9.72565 -9.54110 -9.21727 -8.38782 -8.33121 -6.84308 -6.07420 -3.26020 2.75531 3.24215 3.43113 3.46666 3.53530 3.60671 3.75167 4.05400 4.33409 4.52789 4.53174 4.81494 4.88336 5.02927 5.12604 5.29824 5.35116 5.44471 5.53673 5.58751 5.60390 5.62280 5.67068 5.77422 5.90532 5.94494 5.96846 6.04798 6.13543 6.20662 6.28817 6.35753 6.54374 6.56962 6.65514 6.71310 6.85302 6.97098 7.16643 7.21451 7.95690 8.05337 8.58050 8.59221 9.09912 9.82341 10.29046 11.18803 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.005572 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.653517 B = 5023.563677 C = 6218.573824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.335 3.665 3 F -0.194 7.194 4 F -0.195 7.195 5 C -0.220 4.220 6 C 0.553 3.447 7 O -0.543 6.543 8 N -0.686 5.686 9 C 0.136 3.864 10 C 0.160 3.840 11 H 0.034 0.966 12 C -0.130 4.130 13 C -0.107 4.107 14 C -0.136 4.136 15 C 0.146 3.854 16 N -0.592 5.592 17 C -0.363 4.363 18 H 0.075 0.925 19 C -0.020 4.020 20 N -0.910 5.910 21 Si 1.048 2.952 22 H -0.294 1.294 23 H -0.289 1.289 24 H -0.286 1.286 25 C -0.126 4.126 26 C -0.146 4.146 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.409 0.591 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.011 0.989 41 H 0.273 0.727 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 1.979 -10.065 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.299 3.701 3 F -0.174 7.174 4 F -0.176 7.176 5 C -0.224 4.224 6 C 0.337 3.663 7 O -0.421 6.421 8 N -0.335 5.335 9 C 0.013 3.987 10 C 0.053 3.947 11 H 0.051 0.949 12 C -0.170 4.170 13 C -0.144 4.144 14 C -0.175 4.175 15 C 0.020 3.980 16 N -0.317 5.317 17 C -0.492 4.492 18 H 0.092 0.908 19 C -0.223 4.223 20 N -0.550 5.550 21 Si 0.878 3.122 22 H -0.221 1.221 23 H -0.215 1.215 24 H -0.212 1.212 25 C -0.163 4.163 26 C -0.183 4.183 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.245 0.755 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.029 0.971 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.984 0.507 -9.467 11.776 hybrid contribution -0.672 1.495 -0.322 1.670 sum -7.656 2.001 -9.789 12.588 Atomic orbital electron populations 1.22693 0.90763 1.05982 1.05007 1.20034 0.93621 0.75067 0.81412 1.93034 1.90630 1.37079 1.96696 1.92993 1.90692 1.81076 1.52857 1.22376 1.07332 0.98309 0.94403 1.18752 0.82528 0.80315 0.84706 1.90668 1.28866 1.63332 1.59216 1.45959 1.36149 1.32370 1.19071 1.21371 0.96390 0.97115 0.83848 1.20947 0.86714 0.92774 0.94283 0.94870 1.22066 0.96982 0.98621 0.99364 1.21363 0.96046 0.97392 0.99637 1.22036 0.95825 0.98953 1.00717 1.20935 0.92504 0.93192 0.91379 1.44288 1.01224 1.07667 1.78479 1.20303 1.23493 0.86696 1.18722 0.90751 1.25720 1.00038 1.01488 0.95078 1.70754 1.45545 1.30315 1.08378 0.83792 0.77185 0.75821 0.75366 1.22108 1.21541 1.21168 1.23025 1.00111 0.88369 1.04813 1.23290 0.89515 0.99945 1.05574 0.89137 0.90041 0.88913 0.75517 0.90304 0.92781 0.91953 0.93280 0.93496 0.93063 0.91685 0.93473 0.90111 0.97072 0.91462 0.86942 0.87304 0.87138 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 9.15 37.16 0.34 -1.75 16 2 C 0.34 4.51 2.08 -26.73 -0.06 4.46 16 3 F -0.19 -2.87 16.91 2.25 0.04 -2.83 16 4 F -0.20 -2.57 15.64 2.25 0.04 -2.53 16 5 C -0.22 -3.29 1.67 -155.66 -0.26 -3.55 16 6 C 0.55 9.96 6.13 -10.99 -0.07 9.89 16 7 O -0.54 -11.14 17.02 5.56 0.09 -11.04 16 8 N -0.69 -12.56 3.24 -60.30 -0.20 -12.75 16 9 C 0.14 2.59 4.52 -4.04 -0.02 2.58 16 10 C 0.16 3.06 2.97 -67.38 -0.20 2.86 16 11 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 12 C -0.13 -2.29 5.40 -26.38 -0.14 -2.43 16 13 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 14 C -0.14 -2.63 5.91 -26.61 -0.16 -2.78 16 15 C 0.15 3.19 5.46 -3.71 -0.02 3.17 16 16 N -0.59 -13.32 2.79 -164.52 -0.46 -13.78 16 17 C -0.36 -9.02 7.94 -15.06 -0.12 -9.14 16 18 H 0.08 1.79 4.60 -52.48 -0.24 1.55 16 19 C -0.02 -0.52 4.62 -17.43 -0.08 -0.60 16 20 N -0.91 -25.84 12.37 55.49 0.69 -25.15 16 21 Si 1.05 24.04 29.99 -169.99 -5.10 18.94 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.13 -1.66 9.61 -26.73 -0.26 -1.92 16 26 C -0.15 -2.13 9.66 -26.73 -0.26 -2.39 16 27 H 0.09 1.09 7.81 -51.93 -0.41 0.69 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.41 7.45 7.89 -40.82 -0.32 7.13 16 31 H 0.08 1.76 7.73 -51.93 -0.40 1.36 16 32 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.41 6.54 -51.93 -0.34 1.07 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 2.02 5.96 -51.93 -0.31 1.71 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.27 7.71 5.49 -40.82 -0.22 7.48 16 42 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.11 1.16 7.87 -51.93 -0.41 0.76 16 44 H 0.11 1.44 7.70 -51.93 -0.40 1.04 16 45 H 0.12 1.97 7.86 -51.93 -0.41 1.56 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -28.78 359.29 -7.84 -36.62 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.91 Total: 10.66 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.45 Total: -3.55 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.03 Total: -51.69 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.07 Total: -5.36 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.10 Total: 18.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.78 -7.84 -36.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752822378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.896 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds