Wall clock time and date at job start Tue Mar 31 2020 11:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39905 * 109.46693 * 2 1 4 4 F 1.39905 * 109.46901 * 119.99436 * 2 1 3 5 5 C 1.52999 * 109.47374 * 239.99930 * 2 1 3 6 6 C 1.50694 * 115.54974 * 40.38821 * 5 2 1 7 7 O 1.21284 * 119.99890 * 245.49682 * 6 5 2 8 8 N 1.34781 * 120.00223 * 65.49881 * 6 5 2 9 9 C 1.46496 * 120.00196 * 174.74159 * 8 6 5 10 10 C 1.52996 * 109.46988 * 184.49907 * 9 8 6 11 11 H 1.08994 * 109.58742 * 300.55450 * 10 9 8 12 12 C 1.53197 * 109.58418 * 180.27519 * 10 9 8 13 13 C 1.53038 * 109.31103 * 185.57815 * 12 10 9 14 14 C 1.53035 * 109.54121 * 61.36672 * 13 12 10 15 15 C 1.53198 * 109.31246 * 298.63428 * 14 13 12 16 16 N 1.46925 * 109.58740 * 60.99061 * 10 9 8 17 17 C 1.36939 * 120.63004 * 353.38723 * 16 10 9 18 18 H 1.07999 * 119.99753 * 33.54661 * 17 16 10 19 19 C 1.38806 * 120.00017 * 213.54583 * 17 16 10 20 20 N 1.31615 * 120.00261 * 10.18063 * 19 17 16 21 21 Si 1.86803 * 120.00007 * 190.18114 * 19 17 16 22 22 H 1.48505 * 109.46946 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47325 * 119.99652 * 21 19 17 24 24 H 1.48504 * 109.47134 * 240.00186 * 21 19 17 25 25 C 1.53002 * 117.49691 * 254.68001 * 5 2 1 26 26 C 1.52997 * 117.49614 * 186.05832 * 5 2 1 27 27 H 1.08999 * 109.47106 * 54.61652 * 1 2 3 28 28 H 1.09012 * 109.47010 * 174.61061 * 1 2 3 29 29 H 1.08994 * 109.47607 * 294.60866 * 1 2 3 30 30 H 0.97004 * 119.99370 * 354.75004 * 8 6 5 31 31 H 1.09001 * 109.47328 * 304.50500 * 9 8 6 32 32 H 1.09005 * 109.46712 * 64.50143 * 9 8 6 33 33 H 1.08996 * 109.49918 * 305.52602 * 12 10 9 34 34 H 1.09005 * 109.49974 * 65.62963 * 12 10 9 35 35 H 1.09007 * 109.46062 * 181.38622 * 13 12 10 36 36 H 1.09006 * 109.46471 * 301.34379 * 13 12 10 37 37 H 1.09003 * 109.50286 * 58.58213 * 14 13 12 38 38 H 1.08996 * 109.50542 * 178.68332 * 14 13 12 39 39 H 1.09000 * 109.58559 * 174.41966 * 15 14 13 40 40 H 1.08992 * 109.58469 * 294.70371 * 15 14 13 41 41 H 0.97004 * 120.00027 * 180.02562 * 20 19 17 42 42 H 1.09003 * 117.49941 * 0.02562 * 25 5 2 43 43 H 1.08999 * 117.49539 * 145.02116 * 25 5 2 44 44 H 1.08998 * 117.49739 * 214.97653 * 26 5 2 45 45 H 1.09001 * 117.50063 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6594 1.1424 5 6 2.0401 -0.7212 -1.2492 6 6 1.2804 -0.4373 -2.5193 7 8 0.6568 -1.3236 -3.0639 8 7 1.2940 0.8015 -3.0501 9 6 0.6527 1.0514 -4.3433 10 6 0.9069 2.4993 -4.7673 11 1 0.5015 3.1766 -4.0158 12 6 0.2315 2.7654 -6.1164 13 6 0.6044 4.1684 -6.6009 14 6 2.1199 4.2574 -6.7937 15 6 2.8168 4.0081 -5.4524 16 7 2.3519 2.7244 -4.9094 17 6 3.2482 1.7564 -4.5424 18 1 2.9965 0.7133 -4.6643 19 6 4.4803 2.1159 -4.0138 20 7 4.7127 3.3671 -3.6783 21 14 5.8087 0.8237 -3.7787 22 1 5.3002 -0.4966 -4.2298 23 1 7.0052 1.1929 -4.5770 24 1 6.1764 0.7475 -2.3419 25 6 2.6136 -2.1281 -1.0680 26 6 3.5479 -0.9533 -1.3647 27 1 -0.3633 0.5951 -0.8378 28 1 -0.3634 -1.0232 -0.0965 29 1 -0.3634 0.4279 0.9342 30 1 1.7286 1.5275 -2.5758 31 1 1.0675 0.3755 -5.0912 32 1 -0.4204 0.8815 -4.2555 33 1 0.5691 2.0276 -6.8441 34 1 -0.8502 2.6957 -6.0017 35 1 0.1053 4.3697 -7.5489 36 1 0.2886 4.9040 -5.8612 37 1 2.4398 3.5054 -7.5151 38 1 2.3824 5.2494 -7.1611 39 1 3.8958 3.9721 -5.6023 40 1 2.5710 4.8115 -4.7581 41 1 5.5739 3.6184 -3.3092 42 1 2.6272 -2.5399 -0.0588 43 1 2.4414 -2.8486 -1.8675 44 1 3.9904 -0.9011 -2.3594 45 1 4.1765 -0.5926 -0.5505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752822379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:55 Heat of formation + Delta-G solvation = -95.963144 kcal Electronic energy + Delta-G solvation = -29254.513733 eV Core-core repulsion = 25136.921871 eV Total energy + Delta-G solvation = -4117.591862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.88326 -46.85581 -39.72177 -37.91603 -36.23404 -34.20554 -33.08090 -31.44834 -30.68020 -29.92668 -26.36558 -25.19594 -24.17559 -22.46064 -22.31086 -22.01319 -20.62930 -19.50573 -19.02519 -17.72778 -17.26889 -16.42373 -16.25791 -15.72592 -15.46072 -15.35903 -14.31010 -14.22975 -14.03266 -13.72880 -13.63615 -13.42557 -13.40260 -13.16000 -12.94090 -12.74750 -12.53211 -12.44381 -12.15635 -12.02568 -11.77611 -11.57430 -11.46429 -11.27064 -10.92360 -10.80844 -10.60379 -10.43897 -10.30354 -10.26748 -10.13120 -9.99999 -9.61542 -9.48544 -9.30696 -8.62999 -8.28709 -6.63510 -5.85494 -3.34868 2.84369 3.26387 3.35855 3.37612 3.40331 3.66161 3.90791 4.17620 4.38599 4.40465 4.65916 4.96025 4.99618 5.14155 5.22143 5.30967 5.46982 5.49238 5.61593 5.65692 5.67119 5.72228 5.76379 5.84798 5.94025 6.01669 6.03335 6.11154 6.20376 6.26434 6.34020 6.37882 6.56805 6.69060 6.71769 6.83885 6.94051 7.08703 7.36956 7.64818 7.76161 8.14515 8.40697 8.71525 9.15056 9.75272 10.34972 11.21607 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.006107 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.445983 B = 4583.914679 C = 5570.661541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.332 3.668 3 F -0.187 7.187 4 F -0.197 7.197 5 C -0.216 4.216 6 C 0.553 3.447 7 O -0.552 6.552 8 N -0.682 5.682 9 C 0.134 3.866 10 C 0.160 3.840 11 H 0.032 0.968 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.174 3.826 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.066 0.934 19 C 0.014 3.986 20 N -0.896 5.896 21 Si 0.883 3.117 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.284 1.284 25 C -0.129 4.129 26 C -0.140 4.140 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.417 0.583 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 -3.743 3.901 9.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.296 3.704 3 F -0.168 7.168 4 F -0.178 7.178 5 C -0.220 4.220 6 C 0.337 3.663 7 O -0.431 6.431 8 N -0.332 5.332 9 C 0.010 3.990 10 C 0.053 3.947 11 H 0.049 0.951 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.184 4.184 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.186 4.186 20 N -0.540 5.540 21 Si 0.713 3.287 22 H -0.201 1.201 23 H -0.217 1.217 24 H -0.210 1.210 25 C -0.166 4.166 26 C -0.177 4.177 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.255 0.745 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.563 -4.248 3.602 9.393 hybrid contribution 1.223 -0.026 0.406 1.289 sum -6.341 -4.274 4.009 8.634 Atomic orbital electron populations 1.22755 0.91030 1.05825 1.05251 1.20046 0.93488 0.75432 0.81482 1.93089 1.90532 1.36589 1.96603 1.92976 1.90709 1.81111 1.52987 1.22397 1.00219 1.04351 0.95073 1.18747 0.80458 0.83152 0.83920 1.90648 1.43832 1.45659 1.62999 1.45932 1.55476 1.10253 1.21519 1.21352 0.95388 0.97514 0.84748 1.20738 0.87443 0.92600 0.93956 0.95073 1.21939 0.98495 0.97477 0.98754 1.21357 0.97075 0.96678 0.99365 1.22201 0.95197 0.99554 1.01400 1.20744 0.99033 0.86482 0.88831 1.44031 0.98612 1.15540 1.72921 1.19113 0.95709 0.88037 1.35083 0.91675 1.25107 0.99365 0.95900 0.98215 1.69966 1.22989 1.15849 1.45188 0.86566 0.82639 0.81555 0.77907 1.20100 1.21714 1.21009 1.23073 0.99939 0.89249 1.04322 1.23166 0.88996 1.00510 1.05012 0.89150 0.88948 0.89802 0.74521 0.91305 0.92628 0.92103 0.93063 0.93746 0.92877 0.92875 0.93565 0.89822 0.96346 0.93603 0.87135 0.86963 0.87145 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 8.75 37.16 0.33 -2.08 16 2 C 0.33 5.07 2.18 -26.73 -0.06 5.01 16 3 F -0.19 -3.27 16.76 2.25 0.04 -3.23 16 4 F -0.20 -2.91 15.66 2.25 0.04 -2.88 16 5 C -0.22 -3.58 1.93 -155.66 -0.30 -3.88 16 6 C 0.55 10.30 5.60 -10.99 -0.06 10.24 16 7 O -0.55 -11.35 16.71 5.55 0.09 -11.26 16 8 N -0.68 -12.94 3.79 -60.30 -0.23 -13.17 16 9 C 0.13 2.46 4.43 -4.05 -0.02 2.44 16 10 C 0.16 3.03 2.99 -67.60 -0.20 2.82 16 11 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 12 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 13 C -0.11 -1.72 5.88 -26.69 -0.16 -1.88 16 14 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 15 C 0.17 3.89 5.24 -3.71 -0.02 3.88 16 16 N -0.59 -13.21 2.97 -164.78 -0.49 -13.70 16 17 C -0.25 -6.13 7.03 -15.06 -0.11 -6.24 16 18 H 0.07 1.65 5.98 -52.49 -0.31 1.34 16 19 C 0.01 0.35 5.04 -17.43 -0.09 0.27 16 20 N -0.90 -24.19 11.19 55.49 0.62 -23.57 16 21 Si 0.88 20.58 27.69 -169.99 -4.71 15.87 16 22 H -0.28 -6.31 7.04 56.52 0.40 -5.92 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.13 -1.86 9.45 -26.73 -0.25 -2.11 16 26 C -0.14 -2.35 9.86 -26.73 -0.26 -2.61 16 27 H 0.09 1.18 7.45 -51.93 -0.39 0.80 16 28 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.42 8.51 7.38 -40.82 -0.30 8.21 16 31 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 2.12 6.27 -51.93 -0.33 1.79 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 42 H 0.11 1.36 7.30 -51.93 -0.38 0.98 16 43 H 0.11 1.63 8.00 -51.93 -0.42 1.21 16 44 H 0.11 2.08 6.01 -51.93 -0.31 1.76 16 45 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -27.44 357.64 -7.78 -35.22 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.03 Total: 10.50 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.51 Total: 0.83 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.10 Total: -50.45 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.07 Total: -6.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.71 Total: 15.87 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.44 -7.78 -35.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752822379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.739 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds