Wall clock time and date at job start Tue Mar 31 2020 11:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 112.84647 * 2 1 4 4 O 1.21287 * 119.99496 * 230.32922 * 3 2 1 5 5 N 1.34769 * 120.00510 * 50.05756 * 3 2 1 6 6 C 1.46501 * 120.00436 * 180.27311 * 5 3 2 7 7 C 1.52995 * 109.47350 * 179.97438 * 6 5 3 8 8 H 1.09007 * 109.58653 * 299.79617 * 7 6 5 9 9 C 1.53191 * 109.58852 * 179.51676 * 7 6 5 10 10 C 1.53038 * 109.31522 * 185.57819 * 9 7 6 11 11 C 1.53040 * 109.54063 * 61.36149 * 10 9 7 12 12 C 1.53192 * 109.31177 * 298.63961 * 11 10 9 13 13 N 1.46919 * 109.58913 * 60.22558 * 7 6 5 14 14 C 1.36946 * 120.63066 * 353.41558 * 13 7 6 15 15 H 1.07997 * 119.99636 * 31.63588 * 14 13 7 16 16 C 1.38805 * 120.00246 * 211.63425 * 14 13 7 17 17 N 1.31625 * 119.99770 * 11.79512 * 16 14 13 18 18 Si 1.86801 * 120.00161 * 191.78955 * 16 14 13 19 19 H 1.48504 * 109.46626 * 90.00199 * 18 16 14 20 20 H 1.48499 * 109.47316 * 209.99914 * 18 16 14 21 21 H 1.48491 * 109.47055 * 330.00450 * 18 16 14 22 22 C 1.53777 * 113.61241 * 131.19205 * 2 1 3 23 23 C 1.53955 * 87.02008 * 89.23162 * 22 2 1 24 24 F 1.39902 * 113.53664 * 270.80741 * 23 22 2 25 25 F 1.39904 * 113.66738 * 139.93279 * 23 22 2 26 26 C 1.53774 * 87.11081 * 25.36296 * 23 22 2 27 27 H 1.09003 * 109.47199 * 69.66939 * 1 2 3 28 28 H 1.08997 * 109.47212 * 189.66745 * 1 2 3 29 29 H 1.08999 * 109.47267 * 309.67236 * 1 2 3 30 30 H 0.97003 * 119.99944 * 0.27077 * 5 3 2 31 31 H 1.08998 * 109.46930 * 300.00027 * 6 5 3 32 32 H 1.08999 * 109.46902 * 59.99829 * 6 5 3 33 33 H 1.09008 * 109.49456 * 305.52841 * 9 7 6 34 34 H 1.08999 * 109.49934 * 65.61896 * 9 7 6 35 35 H 1.09002 * 109.46028 * 181.38444 * 10 9 7 36 36 H 1.08995 * 109.45584 * 301.35456 * 10 9 7 37 37 H 1.09003 * 109.49441 * 58.58620 * 11 10 9 38 38 H 1.09000 * 109.49918 * 178.68474 * 11 10 9 39 39 H 1.09000 * 109.59005 * 174.41927 * 12 11 10 40 40 H 1.08998 * 109.58465 * 294.70202 * 12 11 10 41 41 H 0.97006 * 119.99842 * 180.02562 * 17 16 14 42 42 H 1.08997 * 113.61641 * 203.74917 * 22 2 1 43 43 H 1.09003 * 113.61848 * 334.65406 * 22 2 1 44 44 H 1.09003 * 113.61465 * 220.09436 * 26 23 22 45 45 H 1.08999 * 113.61616 * 89.18666 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 8 2.9685 1.6872 -0.8085 5 7 1.6863 2.3008 0.8948 6 6 2.2508 3.6526 0.8909 7 6 1.5959 4.4820 1.9972 8 1 0.5215 4.5408 1.8225 9 6 2.1930 5.8927 2.0033 10 6 1.6368 6.6727 3.1968 11 6 2.0377 5.9728 4.4974 12 6 1.4388 4.5630 4.5195 13 7 1.8522 3.8544 3.3007 14 6 2.4652 2.6322 3.3781 15 1 3.1942 2.3457 2.6345 16 6 2.1498 1.7618 4.4123 17 7 1.1076 2.0018 5.1797 18 14 3.2041 0.2497 4.7149 19 1 4.2942 0.5885 5.6648 20 1 2.3648 -0.8319 5.2900 21 1 3.7914 -0.2092 3.4307 22 6 2.1459 -0.9280 1.0603 23 6 2.0950 -2.0420 -0.0011 24 9 0.8943 -2.7599 -0.0003 25 9 3.2237 -2.8686 -0.0023 26 6 2.1461 -0.9281 -1.0601 27 1 -0.3634 0.3571 -0.9637 28 1 -0.3633 -1.0130 0.1726 29 1 -0.3634 0.6560 0.7910 30 1 1.0037 2.0621 1.5414 31 1 3.3254 3.5981 1.0649 32 1 2.0625 4.1222 -0.0746 33 1 3.2781 5.8281 2.0848 34 1 1.9270 6.4044 1.0784 35 1 2.0412 7.6849 3.1895 36 1 0.5499 6.7154 3.1278 37 1 3.1243 5.9075 4.5553 38 1 1.6611 6.5415 5.3476 39 1 1.8018 4.0255 5.3956 40 1 0.3514 4.6285 4.5556 41 1 0.8874 1.3937 5.9026 42 1 3.1584 -0.6477 1.3507 43 1 1.4939 -1.1079 1.9150 44 1 1.4940 -1.1081 -1.9148 45 1 3.1586 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752823792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:19 Heat of formation + Delta-G solvation = -101.941404 kcal Electronic energy + Delta-G solvation = -28795.030382 eV Core-core repulsion = 24677.179283 eV Total energy + Delta-G solvation = -4117.851099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.77641 -47.09565 -40.07312 -38.10162 -36.82623 -34.24717 -33.12802 -30.97794 -29.97321 -29.12634 -26.40132 -26.03546 -25.04456 -23.69513 -22.19060 -21.13187 -20.55155 -19.26431 -18.70010 -17.91723 -16.73132 -16.48097 -16.30413 -15.67576 -15.59619 -15.21293 -14.54359 -14.08381 -14.05673 -14.01402 -13.67784 -13.48160 -13.46551 -13.35768 -13.25990 -12.86876 -12.53168 -12.35130 -12.13571 -12.03718 -11.82871 -11.64728 -11.28890 -11.12262 -10.98272 -10.89677 -10.83066 -10.60156 -10.39125 -10.30993 -10.13960 -10.03009 -9.60370 -9.49051 -9.22345 -8.64993 -8.29089 -6.71504 -5.90379 -3.38499 3.00912 3.24657 3.33501 3.36624 3.46031 3.71174 3.87304 4.25197 4.34696 4.38943 4.56867 5.11901 5.17049 5.21229 5.26237 5.44166 5.46356 5.56415 5.59939 5.63085 5.65698 5.73238 5.88328 5.91426 5.93130 6.00766 6.08179 6.10650 6.22614 6.29586 6.32478 6.36897 6.55439 6.66588 6.69646 6.81792 6.92682 7.10520 7.34080 7.61699 7.71590 8.17584 8.34741 8.76183 9.09839 9.70945 10.29577 11.16054 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.005215 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.738821 B = 5367.922618 C = 6471.153812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C 0.528 3.472 4 O -0.561 6.561 5 N -0.686 5.686 6 C 0.133 3.867 7 C 0.160 3.840 8 H 0.032 0.968 9 C -0.127 4.127 10 C -0.107 4.107 11 C -0.144 4.144 12 C 0.173 3.827 13 N -0.588 5.588 14 C -0.251 4.251 15 H 0.069 0.931 16 C 0.010 3.990 17 N -0.899 5.899 18 Si 0.886 3.114 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.274 1.274 22 C -0.147 4.147 23 C 0.252 3.748 24 F -0.179 7.179 25 F -0.191 7.191 26 C -0.136 4.136 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.416 0.584 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -0.474 -7.804 8.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C 0.313 3.687 4 O -0.441 6.441 5 N -0.336 5.336 6 C 0.009 3.991 7 C 0.053 3.947 8 H 0.049 0.951 9 C -0.167 4.167 10 C -0.145 4.145 11 C -0.184 4.184 12 C 0.048 3.952 13 N -0.312 5.312 14 C -0.380 4.380 15 H 0.087 0.913 16 C -0.189 4.189 17 N -0.543 5.543 18 Si 0.716 3.284 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.185 4.185 23 C 0.216 3.784 24 F -0.159 7.159 25 F -0.172 7.172 26 C -0.174 4.174 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.254 0.746 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.561 -0.398 -8.214 8.370 hybrid contribution 0.259 -1.100 0.789 1.378 sum -1.303 -1.498 -7.425 7.685 Atomic orbital electron populations 1.21754 0.90505 1.03999 1.03183 1.21775 0.97708 0.93297 0.97459 1.19737 0.82323 0.85608 0.81062 1.90639 1.33092 1.80158 1.40170 1.45983 1.42141 1.11593 1.33855 1.21315 0.98820 0.81671 0.97253 1.20730 0.96099 0.90953 0.86896 0.95065 1.21941 1.00813 0.96782 0.97166 1.21359 0.99929 0.97384 0.95821 1.22200 1.00854 0.99705 0.95610 1.20769 0.95553 0.87885 0.91030 1.44060 1.69794 1.18665 0.98676 1.19190 1.16057 0.91363 1.11422 0.91307 1.25077 0.96353 0.97465 1.00023 1.69983 1.25591 1.37883 1.20809 0.86586 0.80196 0.83070 0.78572 1.21453 1.21534 1.19927 1.24233 1.05341 0.91523 0.97432 1.22121 0.71578 0.83116 1.01584 1.92976 1.45113 1.80558 1.97303 1.93000 1.50997 1.75878 1.97281 1.24022 1.05402 0.91105 0.96881 0.91407 0.90589 0.90745 0.74556 0.91558 0.92613 0.92101 0.93055 0.93739 0.92891 0.92871 0.93558 0.89620 0.96383 0.93550 0.86341 0.87840 0.88601 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.95 37.16 0.33 -1.39 16 2 C -0.10 -1.46 1.25 -154.85 -0.19 -1.65 16 3 C 0.53 9.29 6.92 -10.99 -0.08 9.22 16 4 O -0.56 -11.27 15.91 5.55 0.09 -11.18 16 5 N -0.69 -12.26 3.74 -60.30 -0.23 -12.48 16 6 C 0.13 2.39 4.43 -4.04 -0.02 2.37 16 7 C 0.16 2.94 3.01 -67.61 -0.20 2.74 16 8 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.13 -2.05 5.37 -26.61 -0.14 -2.19 16 10 C -0.11 -1.70 5.88 -26.69 -0.16 -1.85 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C 0.17 3.76 5.25 -3.71 -0.02 3.74 16 13 N -0.59 -12.78 2.97 -164.78 -0.49 -13.27 16 14 C -0.25 -5.92 6.95 -15.06 -0.10 -6.02 16 15 H 0.07 1.67 5.88 -52.49 -0.31 1.36 16 16 C 0.01 0.25 5.02 -17.43 -0.09 0.16 16 17 N -0.90 -23.37 11.14 55.49 0.62 -22.76 16 18 Si 0.89 20.02 29.57 -169.99 -5.03 14.99 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -5.94 6.42 56.52 0.36 -5.58 16 22 C -0.15 -2.29 7.00 -25.83 -0.18 -2.47 16 23 C 0.25 3.64 3.27 -25.83 -0.08 3.55 16 24 F -0.18 -2.54 15.52 2.25 0.03 -2.51 16 25 F -0.19 -2.97 17.41 2.25 0.04 -2.93 16 26 C -0.14 -1.83 6.77 -25.92 -0.18 -2.00 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.91 6.20 -51.93 -0.32 0.58 16 29 H 0.07 0.97 7.10 -51.93 -0.37 0.60 16 30 H 0.42 7.75 6.37 -40.82 -0.26 7.49 16 31 H 0.07 1.31 7.42 -51.93 -0.39 0.93 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 2.12 6.16 -51.93 -0.32 1.80 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 42 H 0.12 2.02 7.41 -51.93 -0.38 1.63 16 43 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 44 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.12 1.75 7.45 -51.93 -0.39 1.37 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -26.44 352.99 -7.89 -34.33 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.98 Total: 9.05 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.27 Total: 1.44 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.10 Total: -48.51 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.07 Total: -5.44 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.44 -7.89 -34.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752823792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.614 kcal (2) G-P(sol) polarization free energy of solvation -26.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds