Wall clock time and date at job start Tue Mar 31 2020 10:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 120.00435 * 2 1 4 4 H 1.48506 * 109.47489 * 270.00379 * 3 2 1 5 5 H 1.48505 * 109.47362 * 29.99951 * 3 2 1 6 6 H 1.48504 * 109.47412 * 150.00197 * 3 2 1 7 7 C 1.38814 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00102 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00257 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47174 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46836 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.49318 * 54.93499 * 12 11 10 14 14 C 1.53039 * 109.49929 * 294.83699 * 12 11 10 15 15 C 1.53070 * 109.65812 * 178.74923 * 14 12 11 16 16 C 1.53195 * 109.29524 * 61.15209 * 15 14 12 17 17 N 1.46919 * 108.89273 * 305.57804 * 16 15 14 18 18 C 1.34783 * 120.63144 * 233.55709 * 17 16 15 19 19 O 1.21284 * 119.99853 * 179.97438 * 18 17 16 20 20 C 1.50696 * 120.00028 * 0.02562 * 18 17 16 21 21 C 1.53782 * 113.60966 * 277.49849 * 20 18 17 22 22 C 1.53787 * 87.07748 * 220.01811 * 21 20 18 23 23 F 1.39906 * 113.61090 * 270.87916 * 22 21 20 24 24 F 1.39903 * 113.61610 * 139.98311 * 22 21 20 25 25 C 1.53775 * 113.61857 * 179.97438 * 20 18 17 26 26 C 1.46928 * 118.73982 * 53.53793 * 17 16 15 27 27 H 0.97006 * 119.99309 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99856 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47117 * 59.99445 * 10 9 7 30 30 H 1.09005 * 109.46666 * 299.99688 * 10 9 7 31 31 H 1.08994 * 109.47205 * 59.99950 * 11 10 9 32 32 H 1.08997 * 109.46690 * 299.99380 * 11 10 9 33 33 H 1.09007 * 109.45640 * 298.70737 * 14 12 11 34 34 H 1.09000 * 109.45893 * 58.67529 * 14 12 11 35 35 H 1.08997 * 109.38860 * 301.27396 * 15 14 12 36 36 H 1.09003 * 109.62046 * 181.16739 * 15 14 12 37 37 H 1.09002 * 109.58720 * 185.71834 * 16 15 14 38 38 H 1.08996 * 109.58651 * 65.43731 * 16 15 14 39 39 H 1.09000 * 112.84886 * 48.79471 * 20 18 17 40 40 H 1.09002 * 113.61290 * 334.55925 * 21 20 18 41 41 H 1.08994 * 113.62106 * 105.47353 * 21 20 18 42 42 H 1.08997 * 113.61960 * 254.53075 * 25 20 18 43 43 H 1.09008 * 113.61185 * 25.43421 * 25 20 18 44 44 H 1.08998 * 109.58787 * 66.18123 * 26 17 16 45 45 H 1.09007 * 109.58600 * 186.46436 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 6 1.0635 -4.8197 -0.0035 12 6 1.8285 -6.1448 -0.0042 13 1 2.5209 -6.1655 0.8374 14 6 2.6097 -6.2830 -1.3129 15 6 3.4012 -7.5932 -1.3042 16 6 2.4285 -8.7714 -1.1913 17 7 1.5741 -8.5716 -0.0130 18 6 1.4676 -9.5302 0.9286 19 8 0.7592 -9.3530 1.8970 20 6 2.2296 -10.8216 0.7786 21 6 1.5316 -11.8466 -0.1309 22 6 1.9749 -12.9227 0.8743 23 9 3.2354 -13.4630 0.5973 24 9 1.0036 -13.9010 1.1127 25 6 2.0018 -11.8092 1.9351 26 6 0.8381 -7.3069 0.1198 27 1 -0.4849 0.8402 0.0004 28 1 0.3555 -2.3880 -0.0016 29 1 2.6838 -3.7151 0.8887 30 1 2.6851 -3.7143 -0.8912 31 1 0.4379 -4.7613 -0.8941 32 1 0.4359 -4.7625 0.8858 33 1 1.9143 -6.2867 -2.1522 34 1 3.2980 -5.4440 -1.4152 35 1 4.0810 -7.5997 -0.4522 36 1 3.9736 -7.6812 -2.2277 37 1 2.9898 -9.6995 -1.0826 38 1 1.8097 -8.8215 -2.0872 39 1 3.2813 -10.6669 0.5376 40 1 0.4505 -11.7180 -0.1844 41 1 1.9960 -11.9476 -1.1118 42 1 2.8455 -11.8801 2.6215 43 1 1.0492 -11.6705 2.4465 44 1 0.0897 -7.2351 -0.6694 45 1 0.3479 -7.2698 1.0927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753544677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:21 Heat of formation + Delta-G solvation = -114.869543 kcal Electronic energy + Delta-G solvation = -26556.179066 eV Core-core repulsion = 22437.767361 eV Total energy + Delta-G solvation = -4118.411705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.25821 -47.58622 -40.85125 -38.55131 -37.03071 -35.42142 -33.52415 -32.09921 -30.86819 -28.13057 -26.81721 -26.70223 -25.21537 -23.89727 -22.39968 -21.83925 -20.87931 -19.96165 -19.35821 -18.21114 -17.29540 -17.09443 -16.99254 -16.65113 -15.90586 -15.69091 -14.90236 -14.79527 -14.55501 -14.45554 -14.41217 -14.10327 -13.85598 -13.76117 -13.32604 -13.28454 -13.13423 -12.98966 -12.94220 -12.36892 -12.22149 -11.95469 -11.90689 -11.44441 -11.27859 -11.06661 -10.99507 -10.96206 -10.78503 -10.60855 -10.51547 -10.21042 -10.10586 -9.95350 -9.68226 -8.89163 -8.81034 -6.90492 -5.75697 -3.04224 2.20971 2.62145 2.95205 3.26260 3.43650 3.48548 3.50595 3.71478 3.76771 3.84566 4.29477 4.49781 4.60039 4.68103 4.72691 4.77531 4.86327 4.89825 4.92218 4.99581 5.09911 5.18116 5.22712 5.34896 5.53559 5.55043 5.58017 5.59068 5.68567 5.70762 5.87399 5.94551 6.06865 6.16741 6.21330 6.31871 6.41402 6.45313 6.86196 6.90942 7.10426 7.70197 7.84738 8.43584 9.54296 10.13362 10.47628 11.47345 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.038276 B = 0.002100 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.357426 B =13333.286062 C =13644.913681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.120 4.120 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.119 4.119 15 C -0.136 4.136 16 C 0.105 3.895 17 N -0.605 5.605 18 C 0.528 3.472 19 O -0.535 6.535 20 C -0.134 4.134 21 C -0.148 4.148 22 C 0.256 3.744 23 F -0.178 7.178 24 F -0.187 7.187 25 C -0.142 4.142 26 C 0.115 3.885 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.016 0.984 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.070 0.930 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 -28.043 -2.860 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.092 0.908 14 C -0.156 4.156 15 C -0.174 4.174 16 C -0.018 4.018 17 N -0.337 5.337 18 C 0.315 3.685 19 O -0.411 6.411 20 C -0.155 4.155 21 C -0.187 4.187 22 C 0.219 3.781 23 F -0.159 7.159 24 F -0.168 7.168 25 C -0.181 4.181 26 C -0.007 4.007 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.145 0.855 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.384 -27.867 -2.338 28.478 hybrid contribution 0.339 0.818 -0.148 0.898 sum 5.723 -27.049 -2.487 27.759 Atomic orbital electron populations 1.69667 1.05111 1.25621 1.57872 1.24756 0.95555 0.97731 1.03136 0.86180 0.78640 0.83823 0.77496 1.21731 1.21752 1.20782 1.19232 0.91007 0.84235 1.42523 0.91246 1.42385 1.05909 1.00109 1.89474 1.20661 0.93507 0.85481 0.97637 1.21702 0.98789 0.93000 1.02335 1.21444 0.97326 0.94221 0.98443 0.90801 1.21664 0.99366 0.97083 0.97495 1.21952 0.97878 0.94938 1.02647 1.21830 0.92889 0.99127 0.87978 1.48111 1.46555 1.16765 1.22301 1.20005 0.81835 0.84400 0.82266 1.90727 1.40224 1.79799 1.30381 1.22557 1.01755 0.92697 0.98494 1.24046 1.04092 0.91491 0.99041 1.21977 0.73782 0.82790 0.99542 1.93034 1.40422 1.87940 1.94484 1.93032 1.62063 1.66556 1.95121 1.24016 1.07184 0.90152 0.96703 1.21785 0.93955 0.81319 1.03659 0.93525 0.78326 0.96654 0.96227 0.91740 0.91680 0.91664 0.90510 0.91449 0.90542 0.89988 0.90960 0.85502 0.86407 0.87901 0.88155 0.85514 0.91214 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.89 5.60 -59.91 -0.34 -19.23 16 10 C 0.15 3.07 6.02 -4.04 -0.02 3.05 16 11 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 12 C -0.09 -1.15 2.34 -90.50 -0.21 -1.36 16 13 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 14 C -0.12 -1.23 4.95 -26.67 -0.13 -1.36 16 15 C -0.14 -1.03 6.09 -26.59 -0.16 -1.19 16 16 C 0.10 0.69 6.34 -3.71 -0.02 0.66 16 17 N -0.60 -5.71 2.97 -172.77 -0.51 -6.23 16 18 C 0.53 5.41 7.22 -10.98 -0.08 5.34 16 19 O -0.53 -7.58 15.31 5.55 0.09 -7.50 16 20 C -0.13 -0.90 2.72 -90.96 -0.25 -1.15 16 21 C -0.15 -0.83 7.27 -25.92 -0.19 -1.02 16 22 C 0.26 1.87 3.28 -25.90 -0.08 1.79 16 23 F -0.18 -1.45 17.38 2.25 0.04 -1.41 16 24 F -0.19 -1.72 17.41 2.25 0.04 -1.68 16 25 C -0.14 -1.02 7.19 -25.91 -0.19 -1.21 16 26 C 0.11 1.29 5.72 -3.71 -0.02 1.27 16 27 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.38 10.34 7.67 -40.82 -0.31 10.02 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.39 6.54 -51.93 -0.34 0.05 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.90 6.51 -51.93 -0.34 0.56 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.36 5.69 -51.93 -0.30 0.06 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.13 0.63 7.21 -51.93 -0.37 0.25 16 40 H 0.12 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.13 1.05 7.43 -51.92 -0.39 0.66 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.23 7.00 -51.92 -0.36 0.86 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -33.37 363.90 -8.26 -41.63 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.03 Total: 3.89 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.74 Total: -4.67 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.12 Total: -53.30 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.37 -8.26 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753544677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.237 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds