Wall clock time and date at job start Tue Mar 31 2020 10:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.50312 * 304.93322 * 12 11 10 14 14 C 1.53037 * 109.49721 * 65.00412 * 12 11 10 15 15 C 1.53045 * 109.54036 * 181.31143 * 14 12 11 16 16 C 1.53185 * 109.31189 * 298.63647 * 15 14 12 17 17 N 1.46924 * 108.77978 * 54.62989 * 16 15 14 18 18 C 1.34781 * 120.62966 * 126.41088 * 17 16 15 19 19 O 1.21276 * 119.99632 * 180.02562 * 18 17 16 20 20 C 1.50703 * 120.00018 * 0.02562 * 18 17 16 21 21 H 1.08998 * 112.84716 * 309.66596 * 20 18 17 22 22 C 1.53783 * 113.61308 * 178.46837 * 20 18 17 23 23 C 1.53782 * 87.08009 * 220.01772 * 22 20 18 24 24 C 1.53781 * 113.61251 * 80.85807 * 20 18 17 25 25 F 1.39895 * 113.61319 * 254.52443 * 24 20 18 26 26 F 1.39897 * 113.61765 * 25.43610 * 24 20 18 27 27 C 1.46922 * 118.73703 * 306.39579 * 17 16 15 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 32 32 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 33 33 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 34 34 H 1.08997 * 109.45986 * 301.33169 * 14 12 11 35 35 H 1.09000 * 109.46209 * 61.30322 * 14 12 11 36 36 H 1.09003 * 109.49063 * 58.58413 * 15 14 12 37 37 H 1.08999 * 109.49978 * 178.64244 * 15 14 12 38 38 H 1.09002 * 109.58688 * 174.41969 * 16 15 14 39 39 H 1.08997 * 109.58365 * 294.69901 * 16 15 14 40 40 H 1.08999 * 113.60899 * 334.56536 * 22 20 18 41 41 H 1.08997 * 113.60859 * 105.47063 * 22 20 18 42 42 H 1.08997 * 113.61460 * 139.97684 * 23 22 20 43 43 H 1.08998 * 113.61128 * 270.80309 * 23 22 20 44 44 H 1.08995 * 109.58573 * 293.81500 * 27 17 16 45 45 H 1.08998 * 109.58281 * 173.39641 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 6 1.8287 -6.1447 -0.0173 13 1 2.5202 -6.1615 -0.8598 14 6 2.6120 -6.2887 1.2894 15 6 3.4034 -7.5985 1.2702 16 6 2.4308 -8.7765 1.1572 17 7 1.5743 -8.5716 -0.0188 18 6 1.4657 -9.5263 -0.9640 19 8 0.7558 -9.3449 -1.9303 20 6 2.2265 -10.8192 -0.8199 21 1 3.2843 -10.6662 -0.6059 22 6 1.9669 -11.8172 -1.9608 23 6 1.9621 -12.9202 -0.8892 24 6 1.5484 -11.8317 0.1180 25 9 2.1763 -11.9505 1.3625 26 9 0.1637 -11.6605 0.2207 27 6 0.8382 -7.3063 -0.1448 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6849 -3.7105 -0.8952 31 1 2.6843 -3.7187 0.8848 32 1 0.4368 -4.7660 0.8792 33 1 0.4373 -4.7579 -0.9008 34 1 3.3003 -5.4501 1.3945 35 1 1.9180 -6.2963 2.1299 36 1 4.0800 -7.6020 0.4156 37 1 3.9799 -7.6888 2.1909 38 1 2.9919 -9.7040 1.0435 39 1 1.8154 -8.8295 2.0553 40 1 1.0026 -11.6796 -2.4501 41 1 2.7934 -11.8978 -2.6668 42 1 1.1984 -13.6812 -1.0493 43 1 2.9474 -13.3437 -0.6943 44 1 0.0911 -7.2380 0.6459 45 1 0.3484 -7.2639 -1.1176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753549694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:57 Heat of formation + Delta-G solvation = -112.136025 kcal Electronic energy + Delta-G solvation = -27139.323078 eV Core-core repulsion = 23021.029907 eV Total energy + Delta-G solvation = -4118.293171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.30370 -47.62052 -40.66784 -38.51981 -37.09021 -35.39181 -33.51246 -32.05901 -30.86909 -28.50688 -27.07813 -25.55012 -25.34084 -23.94449 -22.35709 -21.82624 -20.81325 -19.98380 -19.39675 -18.30171 -17.71158 -17.00103 -16.92710 -16.67125 -15.96582 -15.25140 -14.88250 -14.81617 -14.47176 -14.43108 -14.21479 -14.16452 -13.86076 -13.75271 -13.40480 -13.23743 -13.15774 -12.97006 -12.83562 -12.30792 -12.08914 -11.85798 -11.68633 -11.48764 -11.24535 -11.23195 -11.03400 -10.93401 -10.76024 -10.56771 -10.47729 -10.17403 -10.07192 -9.91556 -9.66211 -8.86093 -8.77220 -6.88463 -5.73834 -3.02341 2.10812 2.65997 2.98990 3.25667 3.45120 3.49741 3.51747 3.70818 3.80090 3.87088 4.26727 4.53951 4.61947 4.69085 4.77318 4.81119 4.91733 4.93000 4.96543 5.07123 5.15552 5.22329 5.30030 5.40609 5.56431 5.59406 5.62787 5.65119 5.72942 5.74751 5.91134 5.98051 6.10304 6.20398 6.24718 6.35154 6.44179 6.48792 6.88924 6.93690 7.13404 7.71829 7.86459 8.45481 9.56110 10.15396 10.49738 11.49270 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.033967 B = 0.002340 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.140899 B =11965.402726 C =12243.266832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.074 0.926 14 C -0.119 4.119 15 C -0.134 4.134 16 C 0.103 3.897 17 N -0.604 5.604 18 C 0.524 3.476 19 O -0.527 6.527 20 C -0.167 4.167 21 H 0.141 0.859 22 C -0.113 4.113 23 C -0.163 4.163 24 C 0.270 3.730 25 F -0.186 7.186 26 F -0.170 7.170 27 C 0.115 3.885 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.070 0.930 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -29.817 1.308 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.092 0.908 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.020 4.020 17 N -0.336 5.336 18 C 0.311 3.689 19 O -0.403 6.403 20 C -0.189 4.189 21 H 0.159 0.841 22 C -0.150 4.150 23 C -0.201 4.201 24 C 0.233 3.767 25 F -0.166 7.166 26 F -0.151 7.151 27 C -0.007 4.007 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.541 -29.589 0.846 30.315 hybrid contribution 0.155 1.068 0.376 1.142 sum 6.696 -28.521 1.222 29.322 Atomic orbital electron populations 1.69667 1.05114 1.25612 1.57903 1.24755 0.95546 0.97718 1.03157 0.86180 0.78614 0.83839 0.77516 1.21728 1.21760 1.20788 1.19235 0.91003 0.84242 1.42484 0.91251 1.42389 1.05917 1.00110 1.89460 1.20660 0.93500 0.85468 0.97628 1.21703 0.98793 0.92973 1.02361 1.21447 0.97302 0.94197 0.98455 0.90787 1.21666 0.99372 0.97032 0.97553 1.21936 0.97798 0.94867 1.02633 1.21861 0.92901 0.99112 0.88128 1.48114 1.46417 1.16921 1.22152 1.19918 0.82030 0.84378 0.82604 1.90713 1.39574 1.79465 1.30570 1.24113 1.02779 0.93757 0.98302 0.84139 1.22768 1.05554 0.91275 0.95446 1.24101 1.04901 0.97592 0.93526 1.22014 0.75721 0.99020 0.79958 1.93031 1.81132 1.96489 1.45980 1.93075 1.29490 1.96088 1.96408 1.21791 0.93978 0.81188 1.03705 0.93528 0.78320 0.96669 0.96201 0.91714 0.91678 0.90453 0.91618 0.91453 0.90512 0.90135 0.90926 0.87284 0.88466 0.88165 0.86618 0.91175 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.18 5.60 -59.90 -0.34 -19.51 16 10 C 0.15 3.15 6.02 -4.04 -0.02 3.13 16 11 C -0.12 -1.94 4.80 -26.73 -0.13 -2.07 16 12 C -0.09 -1.23 2.34 -90.50 -0.21 -1.44 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -1.35 4.95 -26.69 -0.13 -1.48 16 15 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 16 C 0.10 0.90 6.30 -3.71 -0.02 0.88 16 17 N -0.60 -6.84 2.97 -172.78 -0.51 -7.35 16 18 C 0.52 6.28 6.67 -10.98 -0.07 6.20 16 19 O -0.53 -8.17 15.32 5.56 0.09 -8.08 16 20 C -0.17 -1.32 2.65 -90.96 -0.24 -1.56 16 21 H 0.14 0.76 7.29 -51.93 -0.38 0.38 16 22 C -0.11 -0.72 7.38 -25.92 -0.19 -0.91 16 23 C -0.16 -0.81 7.88 -25.82 -0.20 -1.01 16 24 C 0.27 2.20 2.99 -25.82 -0.08 2.12 16 25 F -0.19 -1.56 16.51 2.25 0.04 -1.52 16 26 F -0.17 -1.89 16.70 2.25 0.04 -1.85 16 27 C 0.12 1.45 5.72 -3.71 -0.02 1.43 16 28 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 30 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.96 6.51 -51.93 -0.34 0.62 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.57 4.86 -51.93 -0.25 0.31 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.11 0.91 7.45 -51.93 -0.39 0.52 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.04 361.46 -8.27 -42.31 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.99 Total: 4.58 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.74 Total: -3.62 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.12 Total: -54.99 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.07 Total: -3.37 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.04 -8.27 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753549694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.826 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds