Wall clock time and date at job start Tue Mar 31 2020 11:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48502 * 109.46985 * 269.99978 * 3 2 1 5 5 H 1.48499 * 109.47190 * 29.99854 * 3 2 1 6 6 H 1.48494 * 109.47149 * 149.99588 * 3 2 1 7 7 C 1.38815 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99757 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99947 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99836 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46813 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46953 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.49496 * 54.93558 * 12 11 10 14 14 C 1.53039 * 109.52618 * 294.85859 * 12 11 10 15 15 C 1.53041 * 109.53820 * 178.66810 * 14 12 11 16 16 C 1.52763 * 109.38436 * 61.23490 * 15 14 12 17 17 N 1.46925 * 109.00918 * 305.59047 * 16 15 14 18 18 C 1.34776 * 120.62824 * 233.58496 * 17 16 15 19 19 O 1.21282 * 119.99788 * 179.71961 * 18 17 16 20 20 C 1.50695 * 120.00235 * 359.71737 * 18 17 16 21 21 H 1.09000 * 112.90888 * 311.25642 * 20 18 17 22 22 C 1.53965 * 113.66648 * 82.55094 * 20 18 17 23 23 C 1.53782 * 87.10974 * 139.89167 * 22 20 18 24 24 C 1.53780 * 113.61761 * 180.02562 * 20 18 17 25 25 F 1.39905 * 113.61457 * 105.47069 * 24 20 18 26 26 F 1.39901 * 113.61352 * 334.65727 * 24 20 18 27 27 C 1.46920 * 118.73842 * 53.30693 * 17 16 15 28 28 H 0.97008 * 119.99983 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00044 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46710 * 60.00098 * 10 9 7 31 31 H 1.08994 * 109.47025 * 299.99674 * 10 9 7 32 32 H 1.09003 * 109.47332 * 59.99820 * 11 10 9 33 33 H 1.08995 * 109.47655 * 299.99744 * 11 10 9 34 34 H 1.09000 * 109.45979 * 298.68641 * 14 12 11 35 35 H 1.09000 * 109.46152 * 58.66056 * 14 12 11 36 36 H 1.09002 * 109.49852 * 181.31918 * 15 14 12 37 37 H 1.09003 * 109.49488 * 301.37805 * 15 14 12 38 38 H 1.09001 * 109.50775 * 185.70944 * 16 15 14 39 39 H 1.08999 * 109.42900 * 65.42671 * 16 15 14 40 40 H 1.09003 * 113.52979 * 25.34270 * 22 20 18 41 41 H 1.08994 * 113.66799 * 254.46054 * 22 20 18 42 42 H 1.09001 * 113.61250 * 220.08912 * 23 22 20 43 43 H 1.09002 * 113.68969 * 89.19859 * 23 22 20 44 44 H 1.09009 * 109.58404 * 66.43126 * 27 17 16 45 45 H 1.08998 * 109.58805 * 186.71151 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 6 6.3813 -3.5163 0.0017 13 1 6.0520 -4.1269 -0.8391 14 6 6.1118 -4.2619 1.3108 15 6 6.8504 -5.6023 1.2977 16 6 8.3530 -5.3521 1.1837 17 7 8.6101 -4.5097 0.0078 18 6 9.4922 -4.8970 -0.9348 19 8 9.6918 -4.1950 -1.9035 20 6 10.2304 -6.2022 -0.7851 21 1 10.6779 -6.3258 0.2010 22 6 9.4225 -7.4264 -1.2535 23 6 10.7316 -7.9615 -1.8576 24 6 11.1989 -6.4984 -1.9423 25 9 12.5451 -6.3194 -1.6061 26 9 10.8497 -5.8670 -3.1409 27 6 7.8828 -3.2400 -0.1242 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 0.0014 30 1 3.8490 -3.0422 -0.8892 31 1 3.8484 -3.0426 0.8908 32 1 5.8796 -1.6197 0.8910 33 1 5.8797 -1.6198 -0.8889 34 1 6.4638 -3.6616 2.1497 35 1 5.0412 -4.4384 1.4144 36 1 6.6392 -6.1430 2.2203 37 1 6.5163 -6.1934 0.4450 38 1 8.8730 -6.3036 1.0723 39 1 8.7051 -4.8439 2.0814 40 1 8.6634 -7.1877 -1.9985 41 1 9.0379 -8.0357 -0.4358 42 1 10.6017 -8.4356 -2.8305 43 1 11.3174 -8.5673 -1.1663 44 1 8.1958 -2.5559 0.6647 45 1 8.0946 -2.7969 -1.0973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753549695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:00 Heat of formation + Delta-G solvation = -106.892870 kcal Electronic energy + Delta-G solvation = -27092.719390 eV Core-core repulsion = 22974.653580 eV Total energy + Delta-G solvation = -4118.065810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.06267 -47.37771 -40.73880 -38.47673 -37.25096 -35.56631 -33.57618 -32.14264 -31.14613 -28.71515 -27.32448 -25.50483 -25.49356 -23.92639 -22.34368 -21.63425 -20.87171 -20.20829 -19.33826 -18.41913 -17.52801 -17.34533 -16.97740 -16.42828 -15.70537 -15.40617 -14.98725 -14.84167 -14.59185 -14.51702 -14.22527 -14.11608 -13.76024 -13.62471 -13.59790 -13.32349 -13.18305 -13.01720 -12.69704 -12.41199 -12.31159 -11.93998 -11.71270 -11.64695 -11.45103 -11.21831 -11.14959 -11.03816 -10.82103 -10.66521 -10.52961 -10.31424 -10.09502 -9.91130 -9.58381 -8.90648 -8.82908 -7.21253 -5.75966 -3.11182 2.20449 2.55341 3.06669 3.25319 3.38711 3.41962 3.46387 3.77656 3.81298 3.87160 4.21798 4.46104 4.60449 4.66429 4.68092 4.73496 4.79419 4.92755 4.95599 5.03352 5.05562 5.09762 5.14715 5.30357 5.43646 5.48211 5.54483 5.54824 5.62926 5.63558 5.80437 5.83102 5.95385 6.01212 6.13621 6.20757 6.25278 6.37813 6.75501 6.79980 7.07256 7.84553 8.00600 8.43320 9.22780 9.95392 10.15425 11.42542 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026912 B = 0.002490 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.163356 B =11240.264579 C =11628.538114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.758 5.758 10 C 0.159 3.841 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.076 0.924 14 C -0.119 4.119 15 C -0.135 4.135 16 C 0.105 3.895 17 N -0.605 5.605 18 C 0.522 3.478 19 O -0.521 6.521 20 C -0.170 4.170 21 H 0.139 0.861 22 C -0.118 4.118 23 C -0.164 4.164 24 C 0.279 3.721 25 F -0.190 7.190 26 F -0.158 7.158 27 C 0.115 3.885 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.024 0.976 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.069 0.931 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.740 -19.584 2.692 31.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.032 3.968 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.094 0.906 14 C -0.157 4.157 15 C -0.173 4.173 16 C -0.018 4.018 17 N -0.339 5.339 18 C 0.308 3.692 19 O -0.396 6.396 20 C -0.192 4.192 21 H 0.157 0.843 22 C -0.156 4.156 23 C -0.202 4.202 24 C 0.242 3.758 25 F -0.171 7.171 26 F -0.138 7.138 27 C -0.007 4.007 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.087 0.913 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.645 -19.252 2.140 31.346 hybrid contribution 0.606 1.386 0.070 1.514 sum 25.251 -17.866 2.211 31.011 Atomic orbital electron populations 1.69707 1.05112 1.25817 1.57703 1.24686 0.95267 0.97265 1.02088 0.86522 0.79173 0.84870 0.77821 1.21051 1.21738 1.20329 1.19066 0.80699 0.94717 1.42892 0.89285 1.42737 1.04073 1.02369 1.91178 1.20640 0.88485 0.89219 0.98487 1.21757 0.96452 0.95851 1.02219 1.21434 0.93662 0.97672 0.98647 0.90603 1.21666 1.01469 0.95167 0.97367 1.21862 0.94129 0.98621 1.02716 1.21738 0.97264 0.94745 0.88022 1.48081 1.41442 1.22093 1.22242 1.20006 0.80022 0.86559 0.82616 1.90802 1.64439 1.54554 1.29833 1.24093 0.97899 0.95830 1.01360 0.84343 1.22831 0.96619 0.94008 1.02105 1.24078 0.97243 0.94070 1.04820 1.21767 0.76950 0.94347 0.82717 1.93020 1.35693 1.96361 1.92002 1.93118 1.91239 1.83593 1.45844 1.21761 0.91007 0.84276 1.03632 0.93076 0.80706 0.95760 0.95407 0.91796 0.91707 0.91670 0.90370 0.90491 0.91360 0.90030 0.91074 0.88105 0.88180 0.88131 0.86619 0.91290 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.73 13.97 55.49 0.78 -28.95 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.43 27.74 -169.99 -4.71 17.72 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -18.34 5.41 -59.91 -0.32 -18.66 16 10 C 0.16 3.02 6.02 -4.04 -0.02 3.00 16 11 C -0.12 -1.83 4.80 -26.73 -0.13 -1.96 16 12 C -0.09 -1.10 2.34 -90.50 -0.21 -1.32 16 13 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.12 -1.18 4.96 -26.69 -0.13 -1.32 16 15 C -0.14 -0.96 6.06 -26.83 -0.16 -1.12 16 16 C 0.11 0.67 6.28 -3.93 -0.02 0.65 16 17 N -0.61 -5.91 2.98 -173.04 -0.52 -6.42 16 18 C 0.52 5.90 7.18 -10.99 -0.08 5.82 16 19 O -0.52 -8.26 14.16 5.56 0.08 -8.18 16 20 C -0.17 -1.26 2.61 -90.87 -0.24 -1.49 16 21 H 0.14 0.65 7.49 -51.93 -0.39 0.26 16 22 C -0.12 -0.58 7.20 -25.82 -0.19 -0.77 16 23 C -0.16 -0.80 7.87 -25.90 -0.20 -1.00 16 24 C 0.28 2.57 3.01 -25.90 -0.08 2.49 16 25 F -0.19 -1.97 17.41 2.25 0.04 -1.93 16 26 F -0.16 -2.04 15.20 2.25 0.03 -2.01 16 27 C 0.12 1.30 5.72 -3.72 -0.02 1.28 16 28 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 29 H 0.36 8.50 5.53 -40.82 -0.23 8.28 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.88 6.51 -51.93 -0.34 0.54 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.32 5.46 -51.93 -0.28 0.04 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.10 0.23 7.96 -51.93 -0.41 -0.18 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 45 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -35.84 358.14 -7.99 -43.83 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.01 Total: 2.16 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.74 Total: -2.94 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.06 Total: -54.04 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.08 Total: -8.18 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.84 -7.99 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753549695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.067 kcal (2) G-P(sol) polarization free energy of solvation -35.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds