Wall clock time and date at job start Tue Mar 31 2020 11:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00133 * 2 1 4 4 H 1.48500 * 109.47071 * 269.99918 * 3 2 1 5 5 H 1.48499 * 109.47248 * 30.00458 * 3 2 1 6 6 H 1.48504 * 109.46807 * 150.00685 * 3 2 1 7 7 C 1.38814 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99598 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00256 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00087 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46966 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46965 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.52800 * 55.07999 * 12 11 10 14 14 C 1.53046 * 109.49566 * 294.99867 * 12 11 10 15 15 C 1.53039 * 109.52798 * 178.67884 * 14 12 11 16 16 C 1.53195 * 109.31257 * 61.36716 * 15 14 12 17 17 N 1.46919 * 108.77845 * 305.36660 * 16 15 14 18 18 C 1.34771 * 120.63234 * 233.62780 * 17 16 15 19 19 O 1.21291 * 120.00118 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00281 * 0.02562 * 18 17 16 21 21 H 1.09001 * 112.85081 * 311.19740 * 20 18 17 22 22 C 1.53776 * 113.61996 * 179.97438 * 20 18 17 23 23 C 1.53776 * 87.08414 * 220.01995 * 22 20 18 24 24 C 1.53783 * 87.08206 * 25.43256 * 23 22 20 25 25 F 1.39891 * 113.61427 * 220.02016 * 24 23 22 26 26 F 1.39898 * 113.61564 * 89.11357 * 24 23 22 27 27 C 1.46931 * 118.73612 * 53.60997 * 17 16 15 28 28 H 0.97001 * 119.99241 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00032 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.46861 * 60.00577 * 10 9 7 31 31 H 1.08999 * 109.47304 * 300.00537 * 10 9 7 32 32 H 1.08996 * 109.47154 * 60.00396 * 11 10 9 33 33 H 1.09003 * 109.47133 * 299.99717 * 11 10 9 34 34 H 1.09002 * 109.46115 * 58.66337 * 14 12 11 35 35 H 1.09004 * 109.45806 * 298.69221 * 14 12 11 36 36 H 1.08997 * 109.50134 * 181.32407 * 15 14 12 37 37 H 1.09006 * 109.49908 * 301.38992 * 15 14 12 38 38 H 1.08997 * 109.58182 * 65.15696 * 16 15 14 39 39 H 1.09002 * 109.58573 * 185.43694 * 16 15 14 40 40 H 1.09007 * 113.61081 * 334.57293 * 22 20 18 41 41 H 1.08998 * 113.61651 * 105.46558 * 22 20 18 42 42 H 1.09000 * 113.61627 * 139.97990 * 23 22 20 43 43 H 1.09001 * 113.61587 * 270.80269 * 23 22 20 44 44 H 1.08998 * 109.58959 * 66.17523 * 27 17 16 45 45 H 1.09003 * 109.58181 * 186.46006 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 6 6.3813 -3.5165 -0.0017 13 1 6.0541 -4.1257 -0.8443 14 6 6.1087 -4.2643 1.3055 15 6 6.8472 -5.6046 1.2917 16 6 8.3543 -5.3516 1.1845 17 7 8.6100 -4.5097 0.0079 18 6 9.4943 -4.8952 -0.9332 19 8 9.6969 -4.1910 -1.8997 20 6 10.2314 -6.2012 -0.7848 21 1 10.6768 -6.3261 0.2021 22 6 11.2018 -6.4958 -1.9408 23 6 10.7332 -7.9580 -1.8575 24 6 9.4232 -7.4216 -1.2565 25 9 8.9261 -8.2036 -0.2085 26 9 8.4516 -7.1140 -2.2148 27 6 7.8830 -3.2396 -0.1233 28 1 -0.4849 0.8401 0.0004 29 1 3.8646 -0.3623 -0.0007 30 1 3.8484 -3.0427 -0.8909 31 1 3.8490 -3.0424 0.8891 32 1 5.8797 -1.6200 0.8889 33 1 5.8797 -1.6199 -0.8911 34 1 5.0378 -4.4407 1.4065 35 1 6.4589 -3.6653 2.1463 36 1 6.6340 -6.1471 2.2128 37 1 6.5152 -6.1942 0.4371 38 1 8.7038 -4.8413 2.0820 39 1 8.8776 -6.3018 1.0772 40 1 10.9310 -6.0029 -2.8746 41 1 12.2502 -6.3575 -1.6767 42 1 10.6053 -8.4316 -2.8308 43 1 11.3166 -8.5647 -1.1649 44 1 8.1941 -2.5571 0.6675 45 1 8.0972 -2.7948 -1.0951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753549696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:04 Heat of formation + Delta-G solvation = -107.586319 kcal Electronic energy + Delta-G solvation = -27463.569105 eV Core-core repulsion = 23345.473224 eV Total energy + Delta-G solvation = -4118.095881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.29224 -47.60263 -40.70782 -38.57046 -37.12939 -35.55024 -33.58165 -32.08663 -31.12402 -28.74629 -27.28567 -25.57833 -25.38555 -23.89627 -22.30488 -21.64096 -20.87915 -20.14211 -19.36984 -18.35851 -17.68374 -17.44688 -16.98009 -16.73606 -15.98195 -15.20885 -14.92444 -14.70874 -14.64061 -14.49189 -14.27459 -14.19473 -13.83567 -13.76453 -13.61278 -13.26274 -13.10866 -13.06045 -12.67496 -12.41804 -12.19403 -11.91902 -11.70561 -11.61073 -11.39488 -11.30144 -11.11351 -11.04214 -10.79873 -10.62931 -10.51263 -10.27899 -10.08377 -9.97721 -9.56366 -8.89211 -8.81339 -7.19029 -5.73955 -3.09045 2.06040 2.60418 3.00344 3.25112 3.39887 3.43069 3.47404 3.70502 3.78124 3.84844 4.24229 4.52526 4.62112 4.66472 4.73755 4.76947 4.83281 4.91407 4.95652 5.06404 5.08907 5.14415 5.26112 5.34276 5.49308 5.51309 5.58022 5.62467 5.65806 5.67617 5.84178 5.88271 5.98536 6.05896 6.17009 6.24543 6.28159 6.41630 6.79016 6.83204 7.08019 7.81406 8.02955 8.45417 9.24889 9.97419 10.17643 11.44640 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.002685 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.172116 B =10425.717318 C =10699.570038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.758 5.758 10 C 0.158 3.842 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.076 0.924 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.102 3.898 17 N -0.604 5.604 18 C 0.524 3.476 19 O -0.527 6.527 20 C -0.168 4.168 21 H 0.140 0.860 22 C -0.113 4.113 23 C -0.164 4.164 24 C 0.271 3.729 25 F -0.185 7.185 26 F -0.168 7.168 27 C 0.116 3.884 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.070 0.930 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.506 -18.125 1.717 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.403 5.403 10 C 0.031 3.969 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.094 0.906 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.021 4.021 17 N -0.337 5.337 18 C 0.311 3.689 19 O -0.403 6.403 20 C -0.190 4.190 21 H 0.158 0.842 22 C -0.151 4.151 23 C -0.202 4.202 24 C 0.234 3.766 25 F -0.166 7.166 26 F -0.149 7.149 27 C -0.006 4.006 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 27.329 -17.836 1.205 32.657 hybrid contribution 0.169 1.116 0.231 1.153 sum 27.498 -16.720 1.436 32.214 Atomic orbital electron populations 1.69711 1.05107 1.25783 1.57784 1.24686 0.95269 0.97251 1.02142 0.86518 0.79170 0.84880 0.77798 1.21068 1.21751 1.20334 1.19075 0.80709 0.94733 1.42772 0.89279 1.42733 1.04066 1.02361 1.91180 1.20647 0.88491 0.89199 0.98553 1.21750 0.96463 0.95797 1.02167 1.21445 0.93630 0.97676 0.98787 0.90554 1.21669 1.01493 0.95120 0.97305 1.21912 0.93931 0.98543 1.02842 1.21875 0.97574 0.94774 0.87888 1.48111 1.41027 1.22185 1.22335 1.19938 0.79786 0.86738 0.82444 1.90715 1.64722 1.54741 1.30148 1.24114 0.98024 0.92671 1.04208 0.84243 1.22771 0.99764 0.94034 0.98492 1.24075 0.92980 0.99117 1.04048 1.21944 0.84715 0.90665 0.79254 1.93028 1.90019 1.75804 1.57702 1.93092 1.65449 1.93186 1.63132 1.21773 0.91115 0.84143 1.03582 0.93096 0.80725 0.95707 0.95375 0.91785 0.91726 0.90336 0.91651 0.90451 0.91404 0.90881 0.90033 0.87251 0.88535 0.88117 0.86613 0.91196 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.01 13.97 55.49 0.78 -29.23 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 3 Si 0.89 22.60 27.74 -169.99 -4.71 17.89 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 9 N -0.76 -18.64 5.41 -59.91 -0.32 -18.96 16 10 C 0.16 3.11 6.02 -4.04 -0.02 3.09 16 11 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 12 C -0.10 -1.22 2.34 -90.50 -0.21 -1.43 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.12 -1.32 4.95 -26.69 -0.13 -1.46 16 15 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 16 C 0.10 0.84 6.30 -3.71 -0.02 0.81 16 17 N -0.60 -6.50 2.97 -172.77 -0.51 -7.01 16 18 C 0.52 6.04 6.67 -10.99 -0.07 5.96 16 19 O -0.53 -7.91 15.31 5.55 0.08 -7.82 16 20 C -0.17 -1.27 2.65 -90.96 -0.24 -1.51 16 21 H 0.14 0.67 7.47 -51.93 -0.39 0.28 16 22 C -0.11 -0.69 7.38 -25.92 -0.19 -0.88 16 23 C -0.16 -0.82 7.87 -25.92 -0.20 -1.02 16 24 C 0.27 2.25 2.96 -25.92 -0.08 2.18 16 25 F -0.18 -1.59 16.17 2.25 0.04 -1.56 16 26 F -0.17 -1.97 16.69 2.25 0.04 -1.93 16 27 C 0.12 1.37 5.72 -3.71 -0.02 1.35 16 28 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 29 H 0.36 8.60 5.53 -40.82 -0.23 8.38 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.55 6.54 -51.93 -0.34 0.21 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.98 6.51 -51.93 -0.34 0.64 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.56 4.57 -51.93 -0.24 0.33 16 40 H 0.11 0.89 7.43 -51.92 -0.39 0.51 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -35.08 357.82 -7.91 -43.00 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.94 Total: 3.85 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.74 Total: -3.62 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.06 Total: -55.21 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.07 Total: -3.49 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.08 -7.91 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753549696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.591 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds