Wall clock time and date at job start Tue Mar 31 2020 11:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00090 * 2 1 4 4 H 1.48499 * 109.47329 * 270.00570 * 3 2 1 5 5 H 1.48510 * 109.46777 * 30.00547 * 3 2 1 6 6 H 1.48507 * 109.47172 * 150.00074 * 3 2 1 7 7 C 1.38819 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99578 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99775 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47050 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46894 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.50022 * 304.93750 * 12 11 10 14 14 C 1.53039 * 109.49681 * 65.00504 * 12 11 10 15 15 C 1.53041 * 109.53647 * 181.34876 * 14 12 11 16 16 C 1.53194 * 109.30970 * 298.63046 * 15 14 12 17 17 N 1.46923 * 108.77322 * 54.64020 * 16 15 14 18 18 C 1.34784 * 120.62964 * 126.36706 * 17 16 15 19 19 O 1.21283 * 119.99649 * 179.97438 * 18 17 16 20 20 C 1.50694 * 119.99988 * 359.97438 * 18 17 16 21 21 H 1.08997 * 112.84973 * 311.19422 * 20 18 17 22 22 C 1.53785 * 113.61557 * 82.50475 * 20 18 17 23 23 C 1.53779 * 87.08092 * 139.98011 * 22 20 18 24 24 C 1.53784 * 87.08431 * 334.56631 * 23 22 20 25 25 F 1.39896 * 113.61407 * 270.88571 * 24 23 22 26 26 F 1.39893 * 113.61581 * 139.97852 * 24 23 22 27 27 C 1.46927 * 118.73985 * 306.63925 * 17 16 15 28 28 H 0.97002 * 120.00089 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00327 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46800 * 60.00402 * 10 9 7 31 31 H 1.08995 * 109.47276 * 299.99661 * 10 9 7 32 32 H 1.09005 * 109.46559 * 60.00404 * 11 10 9 33 33 H 1.08990 * 109.47496 * 300.00115 * 11 10 9 34 34 H 1.09000 * 109.45771 * 61.32818 * 14 12 11 35 35 H 1.08998 * 109.44648 * 301.36285 * 14 12 11 36 36 H 1.08996 * 109.49638 * 178.68503 * 15 14 12 37 37 H 1.08997 * 109.50160 * 58.58619 * 15 14 12 38 38 H 1.08998 * 109.58766 * 294.84948 * 16 15 14 39 39 H 1.09003 * 109.70123 * 174.49100 * 16 15 14 40 40 H 1.09004 * 113.61347 * 254.53110 * 22 20 18 41 41 H 1.08999 * 113.61460 * 25.42841 * 22 20 18 42 42 H 1.09006 * 113.61380 * 220.01703 * 23 22 20 43 43 H 1.09003 * 113.69071 * 89.12977 * 23 22 20 44 44 H 1.09003 * 109.58790 * 173.15076 * 27 17 16 45 45 H 1.09007 * 109.58432 * 293.56887 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 6 1.8289 -6.1447 -0.0005 13 1 2.5198 -6.1655 -0.8433 14 6 2.6132 -6.2823 1.3064 15 6 3.4053 -7.5917 1.2925 16 6 2.4331 -8.7708 1.1856 17 7 1.5759 -8.5717 0.0091 18 6 1.4679 -9.5304 -0.9321 19 8 0.7566 -9.3540 -1.8985 20 6 2.2310 -10.8213 -0.7836 21 1 3.2832 -10.6660 -0.5452 22 6 1.5357 -11.8467 0.1275 23 6 1.9774 -12.9227 -0.8786 24 6 2.0007 -11.8095 -1.9393 25 9 0.7764 -11.6322 -2.5926 26 9 3.0814 -11.9000 -2.8230 27 6 0.8433 -7.3051 -0.1250 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 2.6847 -3.7145 0.8895 31 1 2.6848 -3.7146 -0.8905 32 1 0.4370 -4.7621 -0.8898 33 1 0.4376 -4.7618 0.8902 34 1 1.9197 -6.2864 2.1473 35 1 3.3010 -5.4428 1.4070 36 1 3.9818 -7.6779 2.2135 37 1 4.0814 -7.5989 0.4376 38 1 1.8166 -8.8186 2.0831 39 1 2.9928 -9.6998 1.0768 40 1 2.0024 -11.9473 1.1074 41 1 0.4547 -11.7187 0.1835 42 1 1.2206 -13.6854 -1.0625 43 1 2.9600 -13.3440 -0.6660 44 1 0.3561 -7.2662 -1.0993 45 1 0.0943 -7.2310 0.6635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753549697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:08 Heat of formation + Delta-G solvation = -110.466666 kcal Electronic energy + Delta-G solvation = -26957.033209 eV Core-core repulsion = 22838.812427 eV Total energy + Delta-G solvation = -4118.220782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.03193 -47.35124 -40.68589 -38.44567 -37.20293 -35.38733 -33.49989 -32.07311 -30.87601 -28.46998 -27.10974 -25.47936 -25.43586 -23.95699 -22.37239 -21.81331 -20.79142 -19.98922 -19.39180 -18.35033 -17.39463 -17.00151 -16.93349 -16.35785 -15.70250 -15.39993 -14.88953 -14.83924 -14.52547 -14.38008 -14.13992 -14.04889 -13.76486 -13.57831 -13.36600 -13.24920 -13.23281 -12.99274 -12.81744 -12.33524 -12.14357 -11.89997 -11.70242 -11.49566 -11.26233 -11.09131 -11.04841 -10.93963 -10.76378 -10.57810 -10.48627 -10.18488 -10.05011 -9.85849 -9.66086 -8.86494 -8.77786 -6.88891 -5.74152 -3.02635 2.24277 2.62578 3.08126 3.27740 3.44978 3.49641 3.51526 3.79736 3.83228 3.89787 4.24487 4.51076 4.61346 4.68669 4.74180 4.78913 4.91606 4.93500 4.97354 5.05127 5.11586 5.12500 5.19478 5.37439 5.54795 5.56024 5.57454 5.60785 5.70837 5.73820 5.89492 5.96708 6.09042 6.19630 6.23895 6.34264 6.43699 6.47996 6.88326 6.93108 7.12875 7.71623 7.89690 8.45079 9.55797 10.15014 10.49372 11.48935 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.002302 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.919328 B =12159.726608 C =12464.122289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.120 4.120 12 C -0.095 4.095 13 H 0.073 0.927 14 C -0.118 4.118 15 C -0.136 4.136 16 C 0.106 3.894 17 N -0.605 5.605 18 C 0.521 3.479 19 O -0.521 6.521 20 C -0.170 4.170 21 H 0.140 0.860 22 C -0.118 4.118 23 C -0.164 4.164 24 C 0.279 3.721 25 F -0.158 7.158 26 F -0.189 7.189 27 C 0.116 3.884 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.020 0.980 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 -29.912 4.584 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.158 4.158 12 C -0.115 4.115 13 H 0.092 0.908 14 C -0.156 4.156 15 C -0.175 4.175 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.307 3.693 19 O -0.396 6.396 20 C -0.192 4.192 21 H 0.157 0.843 22 C -0.156 4.156 23 C -0.202 4.202 24 C 0.242 3.758 25 F -0.138 7.138 26 F -0.170 7.170 27 C -0.006 4.006 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.795 -29.689 4.020 30.515 hybrid contribution 0.285 1.107 -0.159 1.154 sum 6.080 -28.582 3.861 29.475 Atomic orbital electron populations 1.69662 1.05116 1.25620 1.57898 1.24754 0.95542 0.97716 1.03148 0.86184 0.78609 0.83838 0.77534 1.21715 1.21759 1.20788 1.19234 0.91007 0.84241 1.42498 0.91248 1.42384 1.05911 1.00110 1.89467 1.20660 0.93503 0.85473 0.97632 1.21699 0.98781 0.92972 1.02342 1.21373 0.97407 0.94274 0.98472 0.90847 1.21656 0.99335 0.97064 0.97506 1.21951 0.97893 0.95000 1.02609 1.21820 0.92801 0.98993 0.88091 1.48094 1.46745 1.16582 1.22410 1.19994 0.82325 0.84321 0.82623 1.90804 1.39371 1.79384 1.30061 1.24072 1.03767 0.94074 0.97302 0.84263 1.22785 1.02105 0.92400 0.98272 1.24075 1.05383 0.97474 0.93291 1.21742 0.73229 0.97842 0.82956 1.93113 1.41930 1.95861 1.82916 1.93023 1.54629 1.96696 1.72624 1.21680 0.94010 0.81248 1.03667 0.93524 0.78323 0.96222 0.96651 0.91683 0.91726 0.91633 0.90508 0.90576 0.91462 0.90947 0.90120 0.88253 0.88207 0.88191 0.86606 0.88854 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.14 5.60 -59.91 -0.34 -19.47 16 10 C 0.15 3.14 6.02 -4.04 -0.02 3.11 16 11 C -0.12 -1.92 4.80 -26.73 -0.13 -2.05 16 12 C -0.10 -1.22 2.32 -90.72 -0.21 -1.43 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -1.27 4.96 -26.69 -0.13 -1.40 16 15 C -0.14 -1.07 6.08 -26.61 -0.16 -1.23 16 16 C 0.11 0.73 6.34 -3.71 -0.02 0.70 16 17 N -0.61 -6.23 2.98 -173.03 -0.52 -6.75 16 18 C 0.52 6.14 7.18 -10.98 -0.08 6.06 16 19 O -0.52 -8.53 14.16 5.56 0.08 -8.45 16 20 C -0.17 -1.32 2.63 -90.96 -0.24 -1.56 16 21 H 0.14 0.75 7.21 -51.93 -0.37 0.37 16 22 C -0.12 -0.56 7.46 -25.92 -0.19 -0.76 16 23 C -0.16 -0.80 7.87 -25.92 -0.20 -1.00 16 24 C 0.28 2.66 3.02 -25.91 -0.08 2.58 16 25 F -0.16 -2.07 15.20 2.25 0.03 -2.04 16 26 F -0.19 -2.07 17.41 2.25 0.04 -2.03 16 27 C 0.12 1.39 5.69 -3.93 -0.02 1.37 16 28 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 30 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.93 6.50 -51.93 -0.34 0.59 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.35 5.69 -51.93 -0.30 0.06 16 40 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 1.32 7.01 -51.93 -0.36 0.96 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -35.28 361.69 -8.35 -43.64 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.06 Total: 3.17 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.74 Total: -3.16 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.13 Total: -54.31 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.28 -8.35 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753549697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.831 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds