Wall clock time and date at job start Tue Mar 31 2020 10:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48504 * 109.47121 * 269.99601 * 3 2 1 5 5 H 1.48500 * 109.47510 * 29.99737 * 3 2 1 6 6 H 1.48497 * 109.47176 * 150.00137 * 3 2 1 7 7 C 1.38814 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99698 * 0.02562 * 7 2 1 9 9 N 1.36929 * 119.99980 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99861 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47018 * 180.02562 * 10 9 7 12 12 H 1.09009 * 110.05484 * 54.96804 * 11 10 9 13 13 C 1.54264 * 110.03721 * 293.55226 * 11 10 9 14 14 C 1.54892 * 104.19651 * 217.10651 * 13 11 10 15 15 C 1.54891 * 102.74959 * 37.93955 * 14 13 11 16 16 C 1.54224 * 110.02331 * 176.34070 * 11 10 9 17 17 H 1.09004 * 110.08793 * 238.50143 * 16 11 10 18 18 N 1.46498 * 110.14323 * 0.03814 * 16 11 10 19 19 C 1.34781 * 119.99903 * 203.47692 * 18 16 11 20 20 O 1.21283 * 119.99844 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99783 * 180.02562 * 19 18 16 22 22 C 1.52999 * 109.46885 * 179.97438 * 21 19 18 23 23 C 1.53772 * 113.61789 * 272.49614 * 22 21 19 24 24 C 1.53776 * 87.08667 * 220.02062 * 23 22 21 25 25 F 1.39905 * 113.61502 * 270.88719 * 24 23 22 26 26 F 1.39892 * 113.61799 * 139.97897 * 24 23 22 27 27 C 1.53780 * 113.61431 * 174.99904 * 22 21 19 28 28 H 0.97003 * 119.99836 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00058 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.46916 * 60.00771 * 10 9 7 31 31 H 1.09000 * 109.47471 * 300.00807 * 10 9 7 32 32 H 1.08993 * 110.49070 * 98.42474 * 13 11 10 33 33 H 1.09006 * 110.48110 * 335.77867 * 13 11 10 34 34 H 1.09000 * 110.75513 * 279.62815 * 14 13 11 35 35 H 1.09002 * 110.75596 * 156.25525 * 14 13 11 36 36 H 1.09002 * 110.48740 * 80.73781 * 15 14 13 37 37 H 1.08998 * 110.48604 * 203.24665 * 15 14 13 38 38 H 0.96998 * 119.99816 * 23.48033 * 18 16 11 39 39 H 1.09000 * 109.47157 * 300.00516 * 21 19 18 40 40 H 1.09003 * 109.47195 * 60.00281 * 21 19 18 41 41 H 1.09000 * 112.85002 * 43.81045 * 22 21 19 42 42 H 1.09000 * 113.61812 * 334.56866 * 23 22 21 43 43 H 1.09011 * 113.61441 * 105.46940 * 23 22 21 44 44 H 1.08999 * 113.61558 * 254.53298 * 27 22 21 45 45 H 1.09003 * 113.61750 * 25.35128 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 1 5.8764 -1.5444 0.8388 13 6 6.0301 -1.5266 -1.3282 14 6 7.4199 -2.1350 -1.6407 15 6 7.2598 -3.6060 -1.1830 16 6 6.3997 -3.5165 0.0946 17 1 7.0404 -3.5111 0.9764 18 7 5.4714 -4.6482 0.1550 19 6 5.8668 -5.8158 0.6999 20 8 6.9910 -5.9294 1.1406 21 6 4.9120 -6.9801 0.7615 22 6 5.6054 -8.1738 1.4211 23 6 6.3853 -9.0566 0.4326 24 6 5.8592 -10.2677 1.2207 25 9 6.6850 -10.6456 2.2849 26 9 5.4882 -11.3457 0.4100 27 6 4.6772 -9.3796 1.6436 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.8484 -3.0434 -0.8881 31 1 3.8490 -3.0416 0.8918 32 1 6.1052 -0.4460 -1.2072 33 1 5.3191 -1.7748 -2.1164 34 1 8.1988 -1.6342 -1.0658 35 1 7.6328 -2.0837 -2.7085 36 1 6.7474 -4.1899 -1.9476 37 1 8.2324 -4.0436 -0.9581 38 1 4.5722 -4.5572 -0.1972 39 1 4.0351 -6.7005 1.3455 40 1 4.6044 -7.2516 -0.2484 41 1 6.1783 -7.8949 2.3054 42 1 6.0101 -9.0044 -0.5894 43 1 7.4664 -8.9315 0.4946 44 1 4.3791 -9.5152 2.6832 45 1 3.8341 -9.4148 0.9536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753889003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:48 Heat of formation + Delta-G solvation = -113.475447 kcal Electronic energy + Delta-G solvation = -26715.716405 eV Core-core repulsion = 22597.365152 eV Total energy + Delta-G solvation = -4118.351252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.05159 -47.39142 -40.33132 -38.78114 -37.54232 -34.60202 -33.67780 -31.62333 -30.57911 -29.06535 -27.40421 -26.57951 -24.78213 -23.60967 -22.23590 -20.93736 -20.53647 -20.09803 -19.26161 -17.85550 -17.54984 -17.30650 -16.83362 -16.50126 -16.03356 -15.55405 -15.26928 -14.83603 -14.46494 -14.32754 -14.25215 -13.95860 -13.70951 -13.62951 -13.56516 -13.21508 -12.90527 -12.78971 -12.71445 -12.32085 -11.84078 -11.76124 -11.53439 -11.46273 -11.17177 -11.02745 -11.00857 -10.95658 -10.70794 -10.58488 -10.56655 -10.40125 -10.10896 -9.83724 -9.66268 -9.05278 -8.92488 -7.31857 -5.84287 -3.20307 2.61424 3.11669 3.21490 3.32076 3.34764 3.40552 3.50717 3.97113 4.03092 4.09002 4.49426 4.52988 4.67890 4.71900 4.88549 4.95269 5.05845 5.09823 5.15503 5.25087 5.26159 5.39103 5.42373 5.45437 5.49652 5.50381 5.53419 5.61150 5.70537 5.74095 5.82809 5.93918 5.95495 6.03710 6.15773 6.25660 6.38271 6.46336 6.58116 6.64182 7.52152 7.90143 8.21705 8.34582 9.13214 9.85762 10.05243 11.33923 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.002756 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.621834 B =10156.523019 C =11368.238334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.752 5.752 10 C 0.162 3.838 11 C -0.112 4.112 12 H 0.081 0.919 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.150 3.850 17 H 0.089 0.911 18 N -0.722 5.722 19 C 0.512 3.488 20 O -0.546 6.546 21 C -0.133 4.133 22 C -0.086 4.086 23 C -0.158 4.158 24 C 0.251 3.749 25 F -0.180 7.180 26 F -0.194 7.194 27 C -0.163 4.163 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.408 0.592 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.836 -16.054 -0.820 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.398 5.398 10 C 0.034 3.966 11 C -0.131 4.131 12 H 0.099 0.901 13 C -0.154 4.154 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.045 3.955 17 H 0.107 0.893 18 N -0.376 5.376 19 C 0.299 3.701 20 O -0.423 6.423 21 C -0.173 4.173 22 C -0.105 4.105 23 C -0.196 4.196 24 C 0.215 3.785 25 F -0.161 7.161 26 F -0.174 7.174 27 C -0.201 4.201 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.247 0.753 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.391 -16.256 -0.489 21.717 hybrid contribution 0.083 1.119 -0.108 1.127 sum 14.474 -15.137 -0.597 20.952 Atomic orbital electron populations 1.69699 1.05123 1.25930 1.57290 1.24672 0.95227 0.97258 1.01852 0.86554 0.79238 0.84956 0.77816 1.21007 1.21699 1.20321 1.19028 0.80575 0.94714 1.43405 0.89245 1.42671 1.03989 1.02078 1.91042 1.20655 0.88061 0.89761 0.98106 1.22332 0.96595 0.95248 0.98972 0.90082 1.22403 0.96157 0.99822 0.96980 1.22481 0.97667 0.95239 1.00828 1.22753 0.99917 0.97163 0.97138 1.21654 0.90472 0.84665 0.98752 0.89329 1.46432 1.17668 1.11910 1.61589 1.20577 0.88409 0.83956 0.77178 1.90682 1.20973 1.83190 1.47501 1.21639 0.99025 0.93190 1.03437 1.22143 0.96338 0.92197 0.99793 1.24173 1.03709 0.91539 1.00186 1.22122 0.92216 0.82268 0.81912 1.93020 1.73505 1.92680 1.56919 1.93004 1.91684 1.59876 1.72869 1.24202 0.97208 0.93648 1.05022 0.92986 0.80538 0.95619 0.95319 0.91592 0.90688 0.91563 0.91534 0.91284 0.91474 0.75335 0.87729 0.88298 0.86768 0.87140 0.88566 0.88625 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.97 55.49 0.78 -27.78 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.49 27.73 -169.99 -4.71 16.77 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.25 -6.69 10.47 -15.06 -0.16 -6.85 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 9 N -0.75 -16.75 5.23 -59.91 -0.31 -17.06 16 10 C 0.16 2.77 4.18 -4.04 -0.02 2.75 16 11 C -0.11 -1.57 2.98 -89.32 -0.27 -1.83 16 12 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 13 C -0.12 -1.52 6.02 -25.07 -0.15 -1.67 16 14 C -0.12 -1.33 6.91 -24.74 -0.17 -1.51 16 15 C -0.13 -1.46 6.52 -25.07 -0.16 -1.63 16 16 C 0.15 1.86 3.22 -66.63 -0.21 1.64 16 17 H 0.09 1.19 7.61 -51.93 -0.40 0.80 16 18 N -0.72 -8.28 4.46 -52.54 -0.23 -8.51 16 19 C 0.51 5.87 7.82 -10.98 -0.09 5.78 16 20 O -0.55 -7.98 15.44 5.55 0.09 -7.90 16 21 C -0.13 -1.05 5.54 -27.88 -0.15 -1.20 16 22 C -0.09 -0.70 3.13 -89.81 -0.28 -0.98 16 23 C -0.16 -1.28 7.42 -25.93 -0.19 -1.48 16 24 C 0.25 2.27 3.28 -25.92 -0.08 2.19 16 25 F -0.18 -1.97 17.38 2.25 0.04 -1.93 16 26 F -0.19 -2.00 17.41 2.25 0.04 -1.96 16 27 C -0.16 -1.12 7.43 -25.92 -0.19 -1.32 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.36 7.96 5.37 -40.82 -0.22 7.74 16 30 H 0.03 0.43 7.08 -51.93 -0.37 0.06 16 31 H 0.03 0.50 7.50 -51.93 -0.39 0.12 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.06 7.78 -51.93 -0.40 0.65 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.41 4.43 5.84 -40.82 -0.24 4.19 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.59 7.84 -51.93 -0.41 0.18 16 41 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 42 H 0.11 0.73 7.89 -51.93 -0.41 0.32 16 43 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.11 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -32.32 365.01 -8.09 -40.41 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.04 Total: 8.47 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.23 Total: -6.01 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.23 Total: -53.35 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.32 -8.09 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753889003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.066 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds