Wall clock time and date at job start Tue Mar 31 2020 11:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39894 * 109.47521 * 2 1 4 4 F 1.39902 * 109.46822 * 239.99616 * 2 1 3 5 5 C 1.53008 * 109.47035 * 120.00285 * 2 1 3 6 6 C 1.50704 * 115.54487 * 305.03627 * 5 2 1 7 7 O 1.21282 * 119.99718 * 114.09877 * 6 5 2 8 8 N 1.34765 * 120.00213 * 294.09768 * 6 5 2 9 9 C 1.46503 * 120.00158 * 185.41031 * 8 6 5 10 10 H 1.09003 * 110.01386 * 33.89726 * 9 8 6 11 11 C 1.53870 * 110.07437 * 272.47785 * 9 8 6 12 12 C 1.54261 * 106.60157 * 240.69371 * 11 9 8 13 13 C 1.55023 * 104.28174 * 23.51323 * 12 11 9 14 14 C 1.54268 * 110.03200 * 155.28617 * 9 8 6 15 15 H 1.09001 * 110.48376 * 214.52860 * 14 9 8 16 16 C 1.52996 * 110.48827 * 337.04602 * 14 9 8 17 17 N 1.46498 * 109.47078 * 185.45516 * 16 14 9 18 18 C 1.36935 * 120.00080 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00191 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00397 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99527 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00385 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47444 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47480 * 300.00017 * 22 20 18 25 25 H 1.48505 * 109.47146 * 59.99798 * 22 20 18 26 26 C 1.52995 * 117.50050 * 90.70763 * 5 2 1 27 27 C 1.52995 * 117.50039 * 159.36788 * 5 2 1 28 28 H 1.09000 * 109.46836 * 305.32631 * 1 2 3 29 29 H 1.09002 * 109.46666 * 65.32658 * 1 2 3 30 30 H 1.08999 * 109.47318 * 185.32955 * 1 2 3 31 31 H 0.97004 * 120.00105 * 5.40672 * 8 6 5 32 32 H 1.09002 * 110.03262 * 359.97438 * 11 9 8 33 33 H 1.09007 * 110.03494 * 121.40560 * 11 9 8 34 34 H 1.09004 * 110.48773 * 142.28927 * 12 11 9 35 35 H 1.09002 * 110.48329 * 264.79682 * 12 11 9 36 36 H 1.08999 * 110.88068 * 203.90149 * 13 12 11 37 37 H 1.09010 * 110.69724 * 80.49008 * 13 12 11 38 38 H 1.09002 * 109.47156 * 65.45921 * 16 14 9 39 39 H 1.08996 * 109.47058 * 305.45431 * 16 14 9 40 40 H 0.96999 * 120.00231 * 0.02562 * 17 16 14 41 41 H 0.97001 * 120.00196 * 0.02562 * 21 20 18 42 42 H 1.08997 * 117.49887 * 215.00427 * 26 5 2 43 43 H 1.08993 * 117.50205 * 0.02562 * 26 5 2 44 44 H 1.09001 * 117.49868 * 359.97438 * 27 5 2 45 45 H 1.08998 * 117.49837 * 144.96499 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7214 1.2493 6 6 1.5207 -0.1937 2.5619 7 8 0.8006 -0.8848 3.2510 8 7 1.8563 1.0460 2.9701 9 6 1.4505 1.5153 4.2972 10 1 1.4524 0.6848 5.0033 11 6 0.0486 2.1457 4.2287 12 6 0.2036 3.6145 4.6739 13 6 1.6935 3.9424 4.3986 14 6 2.4086 2.6230 4.7818 15 1 2.5458 2.5633 5.8615 16 6 3.7563 2.5166 4.0653 17 7 4.6895 3.4928 4.6330 18 6 5.9664 3.5826 4.1465 19 1 6.2856 2.9334 3.3445 20 6 6.8509 4.5072 4.6847 21 7 6.4621 5.2979 5.6624 22 14 8.5929 4.6291 4.0215 23 1 9.3306 5.6859 4.7592 24 1 9.2830 3.3264 4.2002 25 1 8.5498 4.9724 2.5773 26 6 2.2913 -2.2268 1.1427 27 6 3.4729 -1.2568 1.2204 28 1 -0.3633 0.5942 0.8385 29 1 -0.3633 0.4290 -0.9339 30 1 -0.3634 -1.0232 0.0955 31 1 2.3667 1.6277 2.3851 32 1 -0.3304 2.1032 3.2076 33 1 -0.6301 1.6212 4.9014 34 1 -0.4456 4.2623 4.0848 35 1 -0.0194 3.7167 5.7360 36 1 2.0336 4.7636 5.0296 37 1 1.8487 4.1739 3.3447 38 1 3.6200 2.7195 3.0031 39 1 4.1582 1.5118 4.1948 40 1 4.4030 4.0756 5.3536 41 1 5.5576 5.2344 6.0071 42 1 2.0810 -2.8356 2.0220 43 1 2.0937 -2.7033 0.1826 44 1 4.0522 -1.0956 0.3112 45 1 4.0402 -1.2271 2.1506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753893909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:02 Heat of formation + Delta-G solvation = -109.657773 kcal Electronic energy + Delta-G solvation = -28217.462597 eV Core-core repulsion = 24099.276891 eV Total energy + Delta-G solvation = -4118.185706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.27395 -47.26653 -40.46998 -38.53634 -36.58394 -34.71277 -33.52964 -31.65622 -31.48267 -28.45737 -27.98580 -25.19548 -24.25188 -23.04142 -22.72054 -22.55528 -20.45482 -20.11616 -19.33554 -18.30332 -17.62820 -17.27881 -16.61596 -16.36296 -15.98434 -15.23571 -14.93745 -14.70588 -14.46814 -14.17735 -14.02770 -13.80377 -13.69162 -13.55385 -13.41685 -13.29393 -13.06467 -12.85730 -12.53183 -12.41395 -11.98739 -11.83269 -11.66017 -11.28170 -11.00268 -10.89004 -10.79630 -10.67129 -10.62080 -10.59383 -10.45706 -10.35609 -9.98553 -9.96287 -9.19236 -9.05904 -8.89380 -7.02278 -6.11557 -3.11348 2.28314 2.87330 3.17637 3.42360 3.51156 3.54536 3.71995 3.78918 3.97496 4.23944 4.41008 4.55123 4.58112 4.66912 4.71259 4.73307 4.97028 5.11908 5.25434 5.32988 5.34120 5.37160 5.46861 5.53090 5.55913 5.58618 5.61890 5.66940 5.74679 5.77995 5.81787 5.94665 5.98926 6.03452 6.17789 6.39223 6.41112 6.53750 6.62980 6.70240 7.45415 7.78955 8.08664 8.74786 9.21421 10.07809 10.22664 11.36997 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.004281 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.971480 B = 6539.237387 C = 7843.257727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.333 3.667 3 F -0.191 7.191 4 F -0.193 7.193 5 C -0.226 4.226 6 C 0.558 3.442 7 O -0.533 6.533 8 N -0.707 5.707 9 C 0.149 3.851 10 H 0.089 0.911 11 C -0.130 4.130 12 C -0.125 4.125 13 C -0.113 4.113 14 C -0.109 4.109 15 H 0.087 0.913 16 C 0.170 3.830 17 N -0.740 5.740 18 C -0.332 4.332 19 H 0.063 0.937 20 C -0.044 4.044 21 N -0.943 5.943 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.123 4.123 27 C -0.140 4.140 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.409 0.591 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.367 0.633 41 H 0.254 0.746 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 -11.794 -9.805 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.297 3.703 3 F -0.172 7.172 4 F -0.174 7.174 5 C -0.230 4.230 6 C 0.342 3.658 7 O -0.409 6.409 8 N -0.360 5.360 9 C 0.044 3.956 10 H 0.107 0.893 11 C -0.169 4.169 12 C -0.163 4.163 13 C -0.151 4.151 14 C -0.129 4.129 15 H 0.106 0.894 16 C 0.042 3.958 17 N -0.386 5.386 18 C -0.463 4.463 19 H 0.081 0.919 20 C -0.242 4.242 21 N -0.589 5.589 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.160 4.160 27 C -0.177 4.177 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.571 -11.602 -9.351 20.154 hybrid contribution -1.189 -0.249 -0.414 1.284 sum -14.760 -11.851 -9.765 21.299 Atomic orbital electron populations 1.22737 0.90746 1.05954 1.05354 1.20056 0.93664 0.75165 0.81465 1.93052 1.90584 1.36959 1.96602 1.93007 1.90638 1.80986 1.52723 1.22445 1.05319 1.00974 0.94246 1.18880 0.80033 0.81761 0.85138 1.90697 1.36233 1.58062 1.55934 1.46300 1.56353 1.14951 1.18409 1.21662 0.93594 0.96927 0.83449 0.89308 1.22557 0.96462 0.96052 1.01790 1.22406 0.97240 0.95508 1.01107 1.22542 0.93491 0.97175 1.01887 1.22510 0.95180 0.93886 1.01276 0.89441 1.20505 0.87386 0.93170 0.94729 1.42331 1.10527 1.42533 1.43190 1.20011 0.89307 1.19525 1.17439 0.91859 1.25757 1.04664 0.95402 0.98329 1.70888 1.19793 1.40404 1.27798 0.83254 0.74923 0.75820 0.75012 1.21009 1.22287 1.22254 1.23078 0.99809 0.88079 1.05060 1.23194 0.88628 1.00428 1.05476 0.89336 0.89578 0.88815 0.75244 0.91573 0.91282 0.91782 0.91580 0.90975 0.91343 0.96541 0.96273 0.79949 0.93434 0.86712 0.86999 0.86893 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 9.03 37.16 0.34 -1.35 16 2 C 0.33 3.65 2.10 -26.73 -0.06 3.60 16 3 F -0.19 -2.45 16.04 2.25 0.04 -2.41 16 4 F -0.19 -2.14 15.65 2.25 0.04 -2.10 16 5 C -0.23 -2.57 1.77 -155.66 -0.27 -2.85 16 6 C 0.56 7.55 6.10 -10.99 -0.07 7.48 16 7 O -0.53 -8.44 16.43 5.56 0.09 -8.35 16 8 N -0.71 -9.60 4.32 -52.72 -0.23 -9.83 16 9 C 0.15 2.04 3.07 -66.81 -0.21 1.84 16 10 H 0.09 1.29 7.66 -51.93 -0.40 0.90 16 11 C -0.13 -1.56 6.59 -25.62 -0.17 -1.73 16 12 C -0.12 -1.47 6.83 -25.00 -0.17 -1.64 16 13 C -0.11 -1.65 6.22 -24.66 -0.15 -1.80 16 14 C -0.11 -1.70 2.84 -88.96 -0.25 -1.96 16 15 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 16 C 0.17 3.33 4.71 -4.04 -0.02 3.31 16 17 N -0.74 -18.34 5.50 -59.91 -0.33 -18.67 16 18 C -0.33 -9.33 9.99 -15.06 -0.15 -9.48 16 19 H 0.06 1.76 7.83 -52.48 -0.41 1.34 16 20 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 21 N -0.94 -29.02 13.70 55.49 0.76 -28.26 16 22 Si 1.08 25.90 29.92 -169.99 -5.09 20.81 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.12 -1.17 9.48 -26.70 -0.25 -1.43 16 27 C -0.14 -1.47 9.70 -26.70 -0.26 -1.73 16 28 H 0.09 0.83 7.64 -51.93 -0.40 0.43 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.41 5.72 5.58 -40.82 -0.23 5.49 16 32 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 33 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.04 7.96 -51.92 -0.41 0.63 16 38 H 0.02 0.33 6.43 -51.93 -0.33 0.00 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.37 9.28 6.48 -40.82 -0.26 9.01 16 41 H 0.25 7.68 6.77 -40.82 -0.28 7.41 16 42 H 0.11 1.12 8.00 -51.93 -0.42 0.70 16 43 H 0.11 0.89 7.63 -51.93 -0.40 0.49 16 44 H 0.11 1.11 7.93 -51.93 -0.41 0.70 16 45 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -32.31 367.89 -7.92 -40.24 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.96 Total: 12.12 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.79 Total: -9.10 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.20 Total: -56.76 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.07 Total: -4.51 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.81 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.31 -7.92 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753893909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.422 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds