Wall clock time and date at job start Tue Mar 31 2020 11:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39897 * 109.47558 * 2 1 4 4 F 1.39905 * 109.46707 * 240.00063 * 2 1 3 5 5 C 1.53003 * 109.47340 * 120.00625 * 2 1 3 6 6 C 1.50695 * 115.54501 * 303.18510 * 5 2 1 7 7 O 1.21284 * 120.00278 * 99.29738 * 6 5 2 8 8 N 1.34778 * 120.00146 * 279.29028 * 6 5 2 9 9 C 1.46498 * 120.00322 * 174.64738 * 8 6 5 10 10 H 1.09001 * 110.54023 * 327.61730 * 9 8 6 11 11 C 1.54888 * 110.48521 * 90.22726 * 9 8 6 12 12 C 1.54892 * 102.74608 * 156.62111 * 11 9 8 13 13 C 1.54265 * 104.19829 * 322.05860 * 12 11 9 14 14 C 1.53879 * 106.59694 * 23.61045 * 13 12 11 15 15 H 1.08995 * 110.02848 * 240.66838 * 14 13 12 16 16 C 1.52994 * 110.03104 * 119.28551 * 14 13 12 17 17 N 1.46503 * 109.47191 * 66.45199 * 16 14 13 18 18 C 1.36939 * 119.99608 * 179.97438 * 17 16 14 19 19 H 1.07992 * 120.00368 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99415 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00472 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99620 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47053 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47574 * 300.00375 * 22 20 18 25 25 H 1.48505 * 109.46959 * 60.00922 * 22 20 18 26 26 C 1.52999 * 117.51629 * 88.88332 * 5 2 1 27 27 C 1.53000 * 117.49896 * 157.51216 * 5 2 1 28 28 H 1.09007 * 109.46580 * 295.72114 * 1 2 3 29 29 H 1.08998 * 109.47378 * 55.71629 * 1 2 3 30 30 H 1.08997 * 109.47591 * 175.72438 * 1 2 3 31 31 H 0.97000 * 119.99751 * 354.65558 * 8 6 5 32 32 H 1.09003 * 110.75721 * 38.31101 * 11 9 8 33 33 H 1.09000 * 110.91790 * 275.00963 * 11 9 8 34 34 H 1.09002 * 110.48277 * 203.38031 * 12 11 9 35 35 H 1.09000 * 110.48748 * 80.74072 * 12 11 9 36 36 H 1.08999 * 110.03231 * 264.32740 * 13 12 11 37 37 H 1.08998 * 110.02845 * 142.89398 * 13 12 11 38 38 H 1.09006 * 109.47250 * 306.45293 * 16 14 13 39 39 H 1.08996 * 109.47076 * 186.45288 * 16 14 13 40 40 H 0.97001 * 120.00050 * 359.97438 * 17 16 14 41 41 H 0.97007 * 119.99492 * 359.97438 * 21 20 18 42 42 H 1.09004 * 117.49497 * 214.96835 * 26 5 2 43 43 H 1.08992 * 117.50338 * 359.97438 * 26 5 2 44 44 H 1.08999 * 117.49848 * 359.97438 * 27 5 2 45 45 H 1.09002 * 117.49576 * 144.99156 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9962 -0.6595 -1.1424 5 6 2.0401 -0.7214 1.2492 6 6 1.5551 -0.1665 2.5636 7 8 0.6308 -0.6976 3.1421 8 7 2.1484 0.9200 3.0965 9 6 1.6043 1.5296 4.3124 10 1 0.5206 1.4169 4.3447 11 6 2.2524 0.9009 5.5708 12 6 2.0607 2.0038 6.6412 13 6 2.2847 3.3216 5.8711 14 6 1.9945 3.0201 4.3903 15 1 2.8852 3.2054 3.7901 16 6 0.8384 3.8912 3.8950 17 7 1.2521 5.2966 3.8926 18 6 0.3767 6.2672 3.4844 19 1 -0.6187 5.9968 3.1646 20 6 0.7685 7.5989 3.4827 21 7 1.9815 7.9286 3.8729 22 14 -0.4254 8.9230 2.9252 23 1 0.2314 10.2518 3.0161 24 1 -0.8287 8.6659 1.5194 25 1 -1.6278 8.9040 3.7966 26 6 2.2508 -2.2339 1.1554 27 6 3.4578 -1.2949 1.2043 28 1 -0.3633 0.4460 0.9259 29 1 -0.3634 0.5789 -0.8491 30 1 -0.3634 -1.0247 -0.0766 31 1 2.9358 1.2984 2.6748 32 1 3.3116 0.7053 5.4031 33 1 1.7336 -0.0129 5.8604 34 1 2.7988 1.8963 7.4361 35 1 1.0508 1.9676 7.0497 36 1 3.3165 3.6525 5.9895 37 1 1.6019 4.0884 6.2368 38 1 -0.0197 3.7661 4.5554 39 1 0.5650 3.5912 2.8834 40 1 2.1461 5.5395 4.1802 41 1 2.6016 7.2409 4.1621 42 1 2.0387 -2.8276 2.0447 43 1 2.0257 -2.7154 0.2039 44 1 4.0270 -1.1587 0.2848 45 1 4.0398 -1.2708 2.1257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753893910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:06 Heat of formation + Delta-G solvation = -114.141863 kcal Electronic energy + Delta-G solvation = -27815.879827 eV Core-core repulsion = 23697.499677 eV Total energy + Delta-G solvation = -4118.380150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.23849 -47.21985 -40.44255 -38.51894 -36.73680 -34.75511 -33.67190 -31.57414 -31.42418 -28.40596 -27.93835 -25.26661 -24.18258 -23.09824 -22.83046 -22.27435 -20.60201 -20.36981 -19.32470 -18.11432 -17.62208 -17.25475 -16.67284 -16.51207 -16.13263 -15.24501 -15.03568 -14.75029 -14.30072 -14.10529 -13.97460 -13.73175 -13.64381 -13.53515 -13.29095 -13.22317 -12.94132 -12.72480 -12.52366 -12.38838 -12.10777 -11.98986 -11.94066 -11.27005 -11.01191 -10.94852 -10.77762 -10.77526 -10.71965 -10.55019 -10.51878 -10.16141 -10.01718 -9.96034 -9.23235 -9.01945 -8.86257 -6.98465 -6.08784 -3.07957 2.21083 2.78255 3.05457 3.39502 3.53090 3.56729 3.73998 3.83178 3.98062 4.16719 4.30401 4.54499 4.59227 4.66849 4.71221 4.76596 4.99275 5.08310 5.16200 5.28045 5.39535 5.40129 5.42604 5.47351 5.53701 5.58009 5.61358 5.66048 5.68443 5.73948 5.82956 5.97344 6.02811 6.14121 6.20055 6.38073 6.41662 6.54457 6.71106 6.81663 7.35502 7.82877 8.00790 8.77791 9.24962 10.11333 10.26544 11.39919 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.003869 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.914497 B = 7234.493452 C = 8725.144883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.335 3.665 3 F -0.188 7.188 4 F -0.194 7.194 5 C -0.220 4.220 6 C 0.559 3.441 7 O -0.527 6.527 8 N -0.706 5.706 9 C 0.147 3.853 10 H 0.097 0.903 11 C -0.131 4.131 12 C -0.121 4.121 13 C -0.116 4.116 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.167 3.833 17 N -0.742 5.742 18 C -0.330 4.330 19 H 0.063 0.937 20 C -0.045 4.045 21 N -0.944 5.944 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.123 4.123 27 C -0.149 4.149 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.404 0.596 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.367 0.633 41 H 0.254 0.746 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 -21.955 -3.492 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.298 3.702 3 F -0.169 7.169 4 F -0.175 7.175 5 C -0.224 4.224 6 C 0.342 3.658 7 O -0.403 6.403 8 N -0.356 5.356 9 C 0.042 3.958 10 H 0.115 0.885 11 C -0.170 4.170 12 C -0.160 4.160 13 C -0.154 4.154 14 C -0.124 4.124 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.387 5.387 18 C -0.461 4.461 19 H 0.081 0.919 20 C -0.242 4.242 21 N -0.590 5.590 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.160 4.160 27 C -0.186 4.186 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.239 0.761 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.200 0.800 41 H 0.065 0.935 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.929 -20.695 -3.422 21.064 hybrid contribution 0.916 -1.248 -0.116 1.553 sum 2.845 -21.943 -3.538 22.408 Atomic orbital electron populations 1.22732 0.90505 1.05718 1.05872 1.19993 0.93936 0.75218 0.81047 1.93091 1.90494 1.36638 1.96629 1.93002 1.90663 1.81042 1.52817 1.22418 1.05098 1.00337 0.94593 1.18865 0.82395 0.80378 0.84128 1.90718 1.28762 1.58956 1.61880 1.46050 1.31964 1.29374 1.28218 1.21976 0.99345 0.91846 0.82609 0.88502 1.22847 1.00708 0.98450 0.94996 1.22313 1.01758 0.94530 0.97353 1.22143 1.02103 0.97556 0.93584 1.22215 1.00118 0.92625 0.97409 0.90628 1.20653 0.93485 0.84801 0.97144 1.42337 1.14780 1.00918 1.80690 1.20029 0.95871 0.89325 1.40912 0.91879 1.25750 1.00508 0.96975 1.00993 1.70889 1.05779 1.35217 1.47135 0.83254 0.74036 0.76096 0.75609 1.21022 1.22295 1.22278 1.23052 0.99550 0.88259 1.05161 1.23185 0.89050 1.01187 1.05129 0.89023 0.89537 0.88956 0.76140 0.91413 0.91309 0.91635 0.91445 0.91885 0.90279 0.96092 0.96409 0.79991 0.93483 0.86941 0.86891 0.86955 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 9.24 37.16 0.34 -1.65 16 2 C 0.33 3.80 2.09 -26.73 -0.06 3.75 16 3 F -0.19 -2.59 17.01 2.25 0.04 -2.55 16 4 F -0.19 -2.15 15.64 2.25 0.04 -2.11 16 5 C -0.22 -2.29 1.72 -155.66 -0.27 -2.56 16 6 C 0.56 7.14 5.88 -10.99 -0.06 7.08 16 7 O -0.53 -8.21 16.67 5.55 0.09 -8.11 16 8 N -0.71 -8.75 5.16 -52.20 -0.27 -9.02 16 9 C 0.15 2.00 2.71 -66.27 -0.18 1.82 16 10 H 0.10 1.50 7.35 -51.93 -0.38 1.12 16 11 C -0.13 -1.55 6.58 -24.74 -0.16 -1.72 16 12 C -0.12 -1.47 6.83 -25.07 -0.17 -1.64 16 13 C -0.12 -1.71 6.13 -25.61 -0.16 -1.87 16 14 C -0.10 -1.63 2.71 -89.50 -0.24 -1.88 16 15 H 0.08 1.19 7.73 -51.93 -0.40 0.79 16 16 C 0.17 3.42 5.29 -4.04 -0.02 3.39 16 17 N -0.74 -18.77 5.34 -59.91 -0.32 -19.09 16 18 C -0.33 -9.49 9.99 -15.06 -0.15 -9.64 16 19 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.04 -1.32 5.50 -17.43 -0.10 -1.41 16 21 N -0.94 -29.35 13.70 55.49 0.76 -28.59 16 22 Si 1.08 26.26 29.92 -169.99 -5.09 21.17 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.30 -6.87 7.11 56.52 0.40 -6.46 16 26 C -0.12 -1.00 9.59 -26.73 -0.26 -1.25 16 27 C -0.15 -1.17 9.68 -26.73 -0.26 -1.43 16 28 H 0.09 1.10 7.29 -51.93 -0.38 0.72 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.40 4.53 8.37 -40.82 -0.34 4.19 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.37 9.40 6.34 -40.82 -0.26 9.14 16 41 H 0.25 7.74 6.77 -40.82 -0.28 7.47 16 42 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.11 0.79 7.69 -51.93 -0.40 0.39 16 44 H 0.11 0.82 7.87 -51.93 -0.41 0.42 16 45 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -33.24 373.07 -7.96 -41.21 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.10 Total: 10.48 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.74 Total: -9.01 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.17 Total: -56.70 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.09 Total: 21.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.24 -7.96 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753893910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.933 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds