Wall clock time and date at job start Tue Mar 31 2020 11:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39898 * 109.47321 * 2 1 4 4 F 1.39895 * 109.47043 * 239.99863 * 2 1 3 5 5 C 1.53006 * 109.46659 * 119.99845 * 2 1 3 6 6 C 1.50694 * 115.56182 * 320.11339 * 5 2 1 7 7 O 1.21284 * 119.99812 * 99.77797 * 6 5 2 8 8 N 1.34770 * 120.00263 * 279.77261 * 6 5 2 9 9 C 1.46505 * 120.00327 * 185.61892 * 8 6 5 10 10 H 1.08998 * 110.01141 * 325.06121 * 9 8 6 11 11 C 1.54260 * 110.03426 * 86.45193 * 9 8 6 12 12 C 1.54885 * 104.19797 * 142.89485 * 11 9 8 13 13 C 1.54889 * 102.74781 * 322.06270 * 12 11 9 14 14 C 1.53879 * 110.03168 * 203.62272 * 9 8 6 15 15 H 1.08996 * 110.02738 * 121.43001 * 14 9 8 16 16 C 1.52998 * 110.03089 * 359.97438 * 14 9 8 17 17 N 1.46502 * 109.46654 * 175.00192 * 16 14 9 18 18 C 1.36937 * 119.99923 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99916 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00082 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99903 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47218 * 59.99878 * 22 20 18 24 24 H 1.48502 * 109.46959 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47230 * 299.99970 * 22 20 18 26 26 C 1.52999 * 117.49379 * 174.42542 * 5 2 1 27 27 C 1.53001 * 60.03096 * 252.52192 * 26 5 2 28 28 H 1.09004 * 109.46824 * 304.96158 * 1 2 3 29 29 H 1.09001 * 109.46880 * 64.95660 * 1 2 3 30 30 H 1.08990 * 109.47380 * 184.96036 * 1 2 3 31 31 H 0.96998 * 120.00078 * 5.61319 * 8 6 5 32 32 H 1.08995 * 110.48837 * 261.57604 * 11 9 8 33 33 H 1.09006 * 110.48733 * 24.08596 * 11 9 8 34 34 H 1.09009 * 110.75739 * 80.37279 * 12 11 9 35 35 H 1.09000 * 110.76143 * 203.55904 * 12 11 9 36 36 H 1.09003 * 110.48923 * 156.61951 * 13 12 11 37 37 H 1.09004 * 110.48276 * 279.12696 * 13 12 11 38 38 H 1.08997 * 109.47430 * 294.99757 * 16 14 9 39 39 H 1.08998 * 109.47318 * 55.00137 * 16 14 9 40 40 H 0.97001 * 120.00286 * 0.02562 * 17 16 14 41 41 H 0.96996 * 120.00142 * 180.02562 * 21 20 18 42 42 H 1.08999 * 117.49891 * 145.02278 * 26 5 2 43 43 H 1.09002 * 117.50129 * 0.02562 * 26 5 2 44 44 H 1.09006 * 117.49306 * 107.48399 * 27 26 5 45 45 H 1.08998 * 117.50290 * 252.47178 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0399 -0.7213 1.2493 6 6 1.2731 -0.4466 2.5172 7 8 0.4481 -1.2433 2.9115 8 7 1.5042 0.6842 3.2130 9 6 0.8507 0.8946 4.5072 10 1 -0.1500 0.4628 4.4943 11 6 1.6884 0.2533 5.6326 12 6 1.5441 1.2363 6.8209 13 6 1.5659 2.6197 6.1246 14 6 0.7728 2.3992 4.8200 15 1 -0.2661 2.6982 4.9595 16 6 1.4027 3.2044 3.6817 17 7 1.2161 4.6354 3.9344 18 6 1.7007 5.5567 3.0447 19 1 2.2200 5.2283 2.1565 20 6 1.5243 6.9125 3.2844 21 7 0.8919 7.3126 4.3670 22 14 2.1847 8.1693 2.0702 23 1 1.5539 7.9545 0.7432 24 1 1.8680 9.5375 2.5527 25 1 3.6566 8.0148 1.9494 26 6 3.5489 -0.9433 1.3703 27 6 2.6245 -2.1240 1.0663 28 1 -0.3633 0.5889 0.8422 29 1 -0.3633 0.4350 -0.9311 30 1 -0.3633 -1.0237 0.0888 31 1 2.1033 1.3589 2.8569 32 1 1.2876 -0.7254 5.8963 33 1 2.7322 0.1681 5.3301 34 1 0.5980 1.0796 7.3392 35 1 2.3820 1.1345 7.5105 36 1 1.0755 3.3680 6.7473 37 1 2.5904 2.9198 5.9045 38 1 2.4681 2.9814 3.6252 39 1 0.9249 2.9365 2.7393 40 1 0.7500 4.9303 4.7323 41 1 0.7683 8.2600 4.5343 42 1 3.9870 -0.8908 2.3670 43 1 4.1784 -0.5752 0.5601 44 1 2.6457 -2.5325 0.0559 45 1 2.4549 -2.8486 1.8627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753893911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:10 Heat of formation + Delta-G solvation = -105.328778 kcal Electronic energy + Delta-G solvation = -28188.174516 eV Core-core repulsion = 24070.176530 eV Total energy + Delta-G solvation = -4117.997986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.15055 -47.12138 -40.46119 -38.49785 -36.59484 -34.38437 -33.60299 -31.57796 -31.42692 -28.61713 -27.81677 -25.03909 -24.54279 -23.02593 -22.73950 -22.49500 -20.58956 -19.92890 -19.06012 -18.15970 -17.55414 -17.14307 -16.59302 -16.27017 -15.85691 -15.23391 -14.85776 -14.76244 -14.48567 -14.05666 -13.90880 -13.80741 -13.60692 -13.43722 -13.09548 -12.97917 -12.92530 -12.65933 -12.43272 -12.24852 -11.89842 -11.87634 -11.68260 -11.38593 -10.94637 -10.87103 -10.84759 -10.82737 -10.67191 -10.53678 -10.42830 -10.32630 -10.00132 -9.91507 -9.69036 -9.03914 -8.86127 -6.94909 -5.77850 -3.06783 2.32574 2.87961 3.17203 3.43895 3.48434 3.49279 3.51404 3.91798 4.04770 4.28146 4.40088 4.56409 4.67510 4.70074 4.77529 4.78335 5.06248 5.21120 5.27462 5.34585 5.41665 5.50512 5.51621 5.52561 5.58119 5.62471 5.71067 5.72473 5.74760 5.80853 5.88356 5.99821 6.12284 6.19234 6.25444 6.42366 6.54665 6.55689 6.68835 6.78509 7.47821 7.68833 8.11395 8.40732 9.52365 10.08786 10.43747 11.44802 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.004670 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.445792 B = 5994.215255 C = 7845.046797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.334 3.666 3 F -0.187 7.187 4 F -0.194 7.194 5 C -0.222 4.222 6 C 0.558 3.442 7 O -0.533 6.533 8 N -0.710 5.710 9 C 0.147 3.853 10 H 0.091 0.909 11 C -0.132 4.132 12 C -0.124 4.124 13 C -0.111 4.111 14 C -0.108 4.108 15 H 0.083 0.917 16 C 0.157 3.843 17 N -0.727 5.727 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.146 4.146 27 C -0.124 4.124 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.411 0.589 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.017 0.983 39 H 0.021 0.979 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 -19.398 -2.882 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.297 3.703 3 F -0.168 7.168 4 F -0.175 7.175 5 C -0.226 4.226 6 C 0.342 3.658 7 O -0.409 6.409 8 N -0.364 5.364 9 C 0.042 3.958 10 H 0.109 0.891 11 C -0.170 4.170 12 C -0.162 4.162 13 C -0.149 4.149 14 C -0.127 4.127 15 H 0.102 0.898 16 C 0.029 3.971 17 N -0.372 5.372 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.183 4.183 27 C -0.161 4.161 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.251 0.749 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.157 -19.842 -2.756 20.149 hybrid contribution 0.560 1.382 -0.744 1.666 sum 2.717 -18.460 -3.500 18.985 Atomic orbital electron populations 1.22767 0.90637 1.05933 1.05679 1.19983 0.93864 0.75258 0.81180 1.93100 1.90488 1.36583 1.96621 1.92991 1.90652 1.81034 1.52844 1.22455 0.99651 1.05198 0.95304 1.18889 0.81970 0.81890 0.83056 1.90695 1.33508 1.47045 1.69688 1.46427 1.48525 1.20186 1.21216 1.21733 0.96896 0.95883 0.81304 0.89127 1.22764 1.00247 0.98745 0.95279 1.22483 1.01600 0.95279 0.96828 1.22356 1.01050 0.96231 0.95267 1.22222 1.01328 0.92364 0.96789 0.89846 1.20677 0.96164 0.85887 0.94350 1.42295 1.68857 0.98830 1.27176 1.19177 1.29462 0.86949 1.01642 0.91243 1.24720 1.01206 0.96957 0.97869 1.69643 1.46929 1.14727 1.26836 0.86284 0.78607 0.80864 0.80539 1.21248 1.21684 1.21252 1.23158 0.89047 1.01205 1.04843 1.23095 0.99174 0.89035 1.04813 0.89106 0.89508 0.88798 0.74925 0.91523 0.91336 0.91520 0.91578 0.91112 0.90957 0.96535 0.96088 0.78152 0.93463 0.87158 0.87070 0.86755 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 8.75 37.16 0.33 -1.84 16 2 C 0.33 4.07 2.18 -26.73 -0.06 4.01 16 3 F -0.19 -2.70 17.06 2.25 0.04 -2.66 16 4 F -0.19 -2.32 15.66 2.25 0.04 -2.28 16 5 C -0.22 -2.53 1.91 -155.62 -0.30 -2.83 16 6 C 0.56 7.46 5.47 -10.99 -0.06 7.40 16 7 O -0.53 -8.40 16.65 5.55 0.09 -8.30 16 8 N -0.71 -9.49 4.42 -52.72 -0.23 -9.72 16 9 C 0.15 1.99 3.25 -66.81 -0.22 1.77 16 10 H 0.09 1.29 7.53 -51.93 -0.39 0.90 16 11 C -0.13 -1.57 6.53 -25.08 -0.16 -1.73 16 12 C -0.12 -1.44 6.91 -24.74 -0.17 -1.61 16 13 C -0.11 -1.62 6.08 -25.07 -0.15 -1.77 16 14 C -0.11 -1.67 2.96 -89.50 -0.27 -1.93 16 15 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.16 3.00 4.18 -4.04 -0.02 2.98 16 17 N -0.73 -17.86 5.45 -59.91 -0.33 -18.18 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.15 -1.35 9.86 -26.73 -0.26 -1.61 16 27 C -0.12 -1.14 9.56 -26.69 -0.26 -1.39 16 28 H 0.09 1.12 7.43 -51.93 -0.39 0.74 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.41 5.64 5.84 -40.82 -0.24 5.40 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.14 7.77 -51.93 -0.40 0.74 16 38 H 0.02 0.32 7.12 -51.93 -0.37 -0.05 16 39 H 0.02 0.42 7.40 -51.93 -0.38 0.04 16 40 H 0.38 9.94 7.55 -40.82 -0.31 9.63 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.11 0.93 7.29 -51.93 -0.38 0.55 16 45 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -31.08 369.84 -8.01 -39.09 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -7.05 Total: 12.10 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -1.84 Total: -5.78 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.16 Total: -55.05 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.08 -8.01 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753893911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.237 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds