Wall clock time and date at job start Tue Mar 31 2020 11:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 115.55286 * 2 1 4 4 C 1.50699 * 109.47192 * 294.84523 * 3 2 1 5 5 O 1.21282 * 120.00046 * 356.11796 * 4 3 2 6 6 N 1.34774 * 119.99959 * 176.11327 * 4 3 2 7 7 C 1.46498 * 119.99997 * 180.27712 * 6 4 3 8 8 C 1.53003 * 109.47358 * 179.72397 * 7 6 4 9 9 H 1.09000 * 109.49317 * 55.06053 * 8 7 6 10 10 C 1.53189 * 109.49713 * 295.00199 * 8 7 6 11 11 N 1.46930 * 108.77721 * 185.41160 * 10 8 7 12 12 C 1.36940 * 120.62948 * 233.58375 * 11 10 8 13 13 H 1.08003 * 119.99622 * 32.17739 * 12 11 10 14 14 C 1.38803 * 119.99870 * 212.17388 * 12 11 10 15 15 N 1.31627 * 119.99988 * 15.91242 * 14 12 11 16 16 Si 1.86806 * 120.00219 * 195.91013 * 14 12 11 17 17 H 1.48497 * 109.46558 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46923 * 119.99970 * 16 14 12 19 19 H 1.48494 * 109.47210 * 240.00255 * 16 14 12 20 20 C 1.46917 * 118.73560 * 53.60452 * 11 10 8 21 21 C 1.53190 * 108.78178 * 306.39453 * 20 11 10 22 22 C 1.53033 * 109.49980 * 175.15948 * 8 7 6 23 23 F 1.39903 * 109.46269 * 301.33890 * 22 8 7 24 24 F 1.39909 * 109.45903 * 61.29922 * 22 8 7 25 25 C 1.53003 * 117.49955 * 145.67468 * 2 1 3 26 26 C 1.53002 * 117.49745 * 214.33165 * 2 1 3 27 27 H 1.09006 * 109.47135 * 54.66271 * 1 2 3 28 28 H 1.08997 * 109.47075 * 174.66609 * 1 2 3 29 29 H 1.09000 * 109.47185 * 294.67208 * 1 2 3 30 30 H 1.09003 * 109.46919 * 174.84490 * 3 2 1 31 31 H 1.09001 * 109.46547 * 54.84397 * 3 2 1 32 32 H 0.96997 * 119.99805 * 359.97438 * 6 4 3 33 33 H 1.09003 * 109.46929 * 299.72292 * 7 6 4 34 34 H 1.09000 * 109.47255 * 59.72407 * 7 6 4 35 35 H 1.09002 * 109.58472 * 305.19937 * 10 8 7 36 36 H 1.09004 * 109.59015 * 65.61924 * 10 8 7 37 37 H 0.96997 * 119.99481 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.59257 * 66.18351 * 20 11 10 39 39 H 1.09001 * 109.58521 * 186.60402 * 20 11 10 40 40 H 1.08994 * 109.50460 * 174.58775 * 21 20 11 41 41 H 1.09002 * 109.49728 * 294.68976 * 21 20 11 42 42 H 1.08998 * 117.49998 * 215.00445 * 25 2 1 43 43 H 1.09004 * 117.49088 * 0.02562 * 25 2 1 44 44 H 1.09006 * 117.49861 * 359.97438 * 26 2 1 45 45 H 1.08996 * 117.50173 * 144.97357 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 1.8681 2.0911 -1.2893 5 8 1.2382 1.5212 -2.1550 6 7 2.2801 3.3600 -1.4803 7 6 1.9619 4.0530 -2.7312 8 6 2.5353 5.4709 -2.6889 9 1 3.6038 5.4250 -2.4783 10 6 1.8318 6.2743 -1.5906 11 7 2.2999 7.6659 -1.6491 12 6 2.8080 8.2784 -0.5347 13 1 3.3456 7.6996 0.2018 14 6 2.6321 9.6431 -0.3518 15 7 1.7314 10.2912 -1.0597 16 14 3.6737 10.5598 0.8990 17 1 4.6056 9.6099 1.5582 18 1 4.4530 11.6206 0.2117 19 1 2.7908 11.1774 1.9208 20 6 2.2119 8.3876 -2.9257 21 6 2.9112 7.5606 -4.0091 22 6 2.3090 6.1539 -4.0395 23 9 2.9237 5.4055 -5.0492 24 9 0.9360 6.2402 -4.2939 25 6 2.2365 -1.1208 0.7653 26 6 2.2364 -1.1207 -0.7654 27 1 -0.3634 0.5944 -0.8384 28 1 -0.3633 -1.0232 -0.0955 29 1 -0.3633 0.4290 0.9338 30 1 3.2701 1.2667 0.0923 31 1 1.8128 1.9633 0.8402 32 1 2.7835 3.8159 -0.7878 33 1 2.3987 3.5093 -3.5690 34 1 0.8800 4.1021 -2.8544 35 1 0.7538 6.2444 -1.7496 36 1 2.0714 5.8488 -0.6161 37 1 1.6083 11.2448 -0.9316 38 1 1.1650 8.5302 -3.1936 39 1 2.7024 9.3566 -2.8321 40 1 2.7703 8.0377 -4.9788 41 1 3.9762 7.4955 -3.7864 42 1 3.1713 -0.8748 1.2689 43 1 1.6111 -1.8584 1.2684 44 1 1.6111 -1.8583 -1.2686 45 1 3.1711 -0.8746 -1.2693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754743531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:15 Heat of formation + Delta-G solvation = -106.020597 kcal Electronic energy + Delta-G solvation = -27597.560079 eV Core-core repulsion = 23479.532093 eV Total energy + Delta-G solvation = -4118.027986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.53648 -46.48818 -39.97432 -37.94362 -37.15060 -34.90401 -32.72628 -31.17088 -30.29086 -29.56841 -28.14986 -25.52254 -25.07670 -22.59611 -22.49536 -21.57767 -20.70883 -19.62520 -19.08570 -17.39655 -16.82509 -16.75983 -16.27650 -15.72168 -15.62266 -15.40894 -15.12002 -14.75740 -14.46310 -13.98281 -13.85693 -13.57237 -13.28787 -13.15035 -12.99012 -12.82706 -12.80112 -12.31953 -12.23491 -12.10862 -11.69423 -11.63723 -11.59420 -11.52085 -11.35793 -11.27113 -10.87883 -10.64261 -10.53080 -10.45441 -10.14770 -10.04086 -9.92125 -9.75766 -9.46826 -8.95911 -8.64861 -6.86769 -5.97169 -3.45927 2.72146 3.10287 3.26812 3.35345 3.36870 3.70999 4.20740 4.34601 4.46979 4.58071 4.62625 4.67825 4.73801 4.83633 4.89509 5.08317 5.20643 5.24772 5.32479 5.39889 5.42895 5.47699 5.53785 5.64423 5.72193 5.78458 5.82762 5.91501 5.94015 5.98988 6.03722 6.13723 6.23954 6.24561 6.32138 6.41647 6.47325 6.69036 7.04698 7.38369 7.56195 7.64070 8.26342 8.30545 9.00081 9.61641 10.19720 11.11965 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.003554 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.610472 B = 7876.942167 C = 9301.891189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.106 4.106 3 C -0.106 4.106 4 C 0.513 3.487 5 O -0.535 6.535 6 N -0.726 5.726 7 C 0.126 3.874 8 C -0.155 4.155 9 H 0.101 0.899 10 C 0.153 3.847 11 N -0.589 5.589 12 C -0.266 4.266 13 H 0.067 0.933 14 C 0.011 3.989 15 N -0.896 5.896 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.288 1.288 20 C 0.173 3.827 21 C -0.179 4.179 22 C 0.300 3.700 23 F -0.214 7.214 24 F -0.199 7.199 25 C -0.178 4.178 26 C -0.163 4.163 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.257 0.743 38 H 0.034 0.966 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -15.583 0.884 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.107 4.107 3 C -0.146 4.146 4 C 0.299 3.701 5 O -0.411 6.411 6 N -0.378 5.378 7 C 0.002 3.998 8 C -0.176 4.176 9 H 0.119 0.881 10 C 0.026 3.974 11 N -0.311 5.311 12 C -0.395 4.395 13 H 0.085 0.915 14 C -0.189 4.189 15 N -0.538 5.538 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.215 1.215 20 C 0.047 3.953 21 C -0.219 4.219 22 C 0.264 3.736 23 F -0.195 7.195 24 F -0.180 7.180 25 C -0.216 4.216 26 C -0.200 4.200 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.238 0.762 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.058 -15.807 0.244 15.942 hybrid contribution 0.746 0.788 0.717 1.300 sum 2.804 -15.019 0.961 15.308 Atomic orbital electron populations 1.21348 0.91687 1.01999 1.02331 1.21018 0.95167 0.89282 1.05224 1.21211 1.01944 0.95117 0.96286 1.20578 0.79124 0.81336 0.89067 1.90684 1.39459 1.65974 1.44998 1.46005 1.57862 1.14115 1.19860 1.21285 1.01125 0.90938 0.86475 1.22964 1.03915 0.94728 0.96026 0.88098 1.20922 0.95630 0.86247 0.94573 1.44045 1.72059 1.08278 1.06728 1.19139 1.28553 0.91601 1.00207 0.91484 1.25196 0.97063 0.98285 0.98372 1.70032 1.32049 1.08821 1.42939 0.86213 0.79866 0.79803 0.80778 1.20091 1.21394 1.21518 1.20763 0.97606 0.94973 0.81964 1.23267 1.02552 0.92782 1.03275 1.21024 0.74875 0.93061 0.84682 1.92957 1.83048 1.79256 1.64210 1.92970 1.33009 1.97025 1.95004 1.23126 1.02285 1.01281 0.94858 1.22954 1.02282 1.01183 0.93596 0.90744 0.92772 0.92642 0.88834 0.88357 0.76235 0.91216 0.90809 0.94989 0.91604 0.93343 0.94823 0.88869 0.90554 0.89578 0.88869 0.88783 0.88866 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.51 37.16 0.35 -0.88 16 2 C -0.11 -1.08 1.60 -154.50 -0.25 -1.32 16 3 C -0.11 -1.02 5.59 -27.88 -0.16 -1.18 16 4 C 0.51 6.73 7.63 -10.99 -0.08 6.65 16 5 O -0.53 -8.89 14.50 5.56 0.08 -8.81 16 6 N -0.73 -9.20 5.33 -60.29 -0.32 -9.52 16 7 C 0.13 1.89 4.83 -4.04 -0.02 1.87 16 8 C -0.15 -2.50 2.03 -90.50 -0.18 -2.68 16 9 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 10 C 0.15 2.91 5.40 -3.71 -0.02 2.89 16 11 N -0.59 -13.50 2.97 -172.32 -0.51 -14.01 16 12 C -0.27 -6.67 9.54 -15.06 -0.14 -6.82 16 13 H 0.07 1.63 7.88 -52.48 -0.41 1.22 16 14 C 0.01 0.29 4.91 -17.43 -0.09 0.20 16 15 N -0.90 -24.59 11.44 55.49 0.63 -23.96 16 16 Si 0.90 20.27 29.58 -169.99 -5.03 15.25 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.17 3.84 5.07 -3.72 -0.02 3.83 16 21 C -0.18 -3.23 5.62 -26.61 -0.15 -3.38 16 22 C 0.30 5.29 1.63 -26.69 -0.04 5.24 16 23 F -0.21 -3.69 16.41 2.25 0.04 -3.65 16 24 F -0.20 -3.82 15.73 2.25 0.04 -3.79 16 25 C -0.18 -1.47 9.94 -26.69 -0.27 -1.74 16 26 C -0.16 -1.61 9.87 -26.69 -0.26 -1.87 16 27 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 28 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 4.32 7.70 -40.82 -0.31 4.00 16 33 H 0.07 1.09 7.63 -51.93 -0.40 0.70 16 34 H 0.07 1.22 7.97 -51.93 -0.41 0.81 16 35 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 36 H 0.07 1.15 7.13 -51.93 -0.37 0.78 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.03 0.81 7.92 -51.92 -0.41 0.40 16 39 H 0.09 2.28 6.35 -51.93 -0.33 1.95 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -29.39 365.27 -8.08 -37.46 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.18 Total: 4.72 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.33 Total: 0.80 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.20 Total: -47.49 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.07 Total: -7.44 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.39 -8.08 -37.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754743531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.557 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds