Wall clock time and date at job start Tue Mar 31 2020 11:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 115.55114 * 2 1 4 4 C 1.50704 * 109.46907 * 278.77885 * 3 2 1 5 5 O 1.21280 * 119.99913 * 0.12664 * 4 3 2 6 6 N 1.34780 * 119.99534 * 180.12685 * 4 3 2 7 7 C 1.46506 * 119.99379 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46812 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.49879 * 304.93535 * 8 7 6 10 10 C 1.53198 * 109.49946 * 64.99923 * 8 7 6 11 11 N 1.46924 * 108.77654 * 174.58553 * 10 8 7 12 12 C 1.36930 * 120.62996 * 126.37144 * 11 10 8 13 13 H 1.08000 * 119.99992 * 332.01040 * 12 11 10 14 14 C 1.38816 * 119.99926 * 152.01798 * 12 11 10 15 15 N 1.31614 * 119.99796 * 345.39941 * 14 12 11 16 16 Si 1.86801 * 119.99866 * 165.40515 * 14 12 11 17 17 H 1.48503 * 109.47053 * 89.99484 * 16 14 12 18 18 H 1.48494 * 109.47206 * 209.99554 * 16 14 12 19 19 H 1.48495 * 109.47131 * 329.99625 * 16 14 12 20 20 C 1.46933 * 118.73789 * 306.64468 * 11 10 8 21 21 C 1.52766 * 109.00910 * 53.30953 * 20 11 10 22 22 C 1.53035 * 109.49754 * 184.83917 * 8 7 6 23 23 F 1.39911 * 109.46199 * 298.70155 * 22 8 7 24 24 F 1.39896 * 109.46393 * 58.67544 * 22 8 7 25 25 C 1.52999 * 117.51459 * 145.69533 * 2 1 3 26 26 C 1.52998 * 60.00113 * 107.48518 * 25 2 1 27 27 H 1.09000 * 109.46423 * 53.47576 * 1 2 3 28 28 H 1.08997 * 109.47153 * 173.46743 * 1 2 3 29 29 H 1.08995 * 109.47358 * 293.48031 * 1 2 3 30 30 H 1.08995 * 109.47259 * 158.77284 * 3 2 1 31 31 H 1.09007 * 109.47277 * 38.77647 * 3 2 1 32 32 H 0.96996 * 120.00250 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.47375 * 60.00116 * 7 6 4 34 34 H 1.08996 * 109.46909 * 299.99960 * 7 6 4 35 35 H 1.09000 * 109.58103 * 54.80063 * 10 8 7 36 36 H 1.08994 * 109.58748 * 294.37519 * 10 8 7 37 37 H 0.97002 * 119.99724 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.58555 * 173.14324 * 20 11 10 39 39 H 1.08996 * 109.58526 * 293.56905 * 20 11 10 40 40 H 1.08997 * 109.56162 * 185.55466 * 21 20 11 41 41 H 1.09001 * 109.38408 * 65.50997 * 21 20 11 42 42 H 1.09007 * 117.49747 * 214.97548 * 25 2 1 43 43 H 1.08997 * 117.50040 * 359.97438 * 25 2 1 44 44 H 1.08996 * 117.50112 * 252.51209 * 26 25 2 45 45 H 1.08996 * 117.49903 * 107.48208 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2110 1.9271 -1.4042 5 8 1.7420 1.2777 -2.3149 6 7 2.7509 3.1377 -1.6480 7 6 2.7718 3.6689 -3.0132 8 6 3.4350 5.0477 -3.0137 9 1 2.9239 5.6975 -2.3035 10 6 4.9065 4.9075 -2.6111 11 7 5.5595 6.2171 -2.7423 12 6 6.2463 6.7626 -1.6908 13 1 5.9685 6.5140 -0.6772 14 6 7.2995 7.6353 -1.9277 15 7 7.8258 7.7202 -3.1311 16 14 7.9698 8.6891 -0.5386 17 1 9.0589 7.9571 0.1568 18 1 8.5029 9.9591 -1.0935 19 1 6.8807 8.9886 0.4254 20 6 5.4564 6.9329 -4.0213 21 6 3.9835 7.0479 -4.4099 22 6 3.3496 5.6550 -4.4158 23 9 4.0329 4.8358 -5.3211 24 9 2.0079 5.7555 -4.7993 25 6 2.2369 -1.1209 0.7648 26 6 2.2366 -1.1208 -0.7652 27 1 -0.3632 0.6117 -0.8259 28 1 -0.3633 -1.0210 -0.1169 29 1 -0.3634 0.4094 0.9425 30 1 3.2109 1.2950 0.3721 31 1 1.6238 2.0538 0.6436 32 1 3.1263 3.6569 -0.9197 33 1 1.7509 3.7562 -3.3848 34 1 3.3363 2.9943 -3.6569 35 1 5.3973 4.1872 -3.2657 36 1 4.9718 4.5686 -1.5773 37 1 8.5620 8.3298 -3.2965 38 1 5.8844 7.9300 -3.9176 39 1 5.9930 6.3812 -4.7931 40 1 3.9015 7.4893 -5.4031 41 1 3.4670 7.6795 -3.6872 42 1 3.1721 -0.8749 1.2679 43 1 1.6119 -1.8583 1.2684 44 1 1.6114 -1.8583 -1.2684 45 1 3.1714 -0.8747 -1.2687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754743532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:19 Heat of formation + Delta-G solvation = -104.228670 kcal Electronic energy + Delta-G solvation = -27613.777147 eV Core-core repulsion = 23495.826865 eV Total energy + Delta-G solvation = -4117.950282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.53030 -46.48235 -39.97644 -37.93315 -37.14401 -34.90329 -32.73133 -31.16207 -30.30999 -29.55984 -28.22484 -25.51315 -25.08565 -22.57233 -22.48165 -21.55718 -20.70829 -19.60801 -19.07347 -17.39132 -16.81871 -16.74610 -16.25256 -15.85670 -15.51408 -15.44628 -15.02117 -14.86012 -14.38525 -13.98674 -13.82674 -13.55565 -13.27567 -13.12861 -13.00289 -12.89181 -12.79461 -12.43048 -12.22594 -12.14125 -11.69139 -11.62172 -11.58638 -11.52874 -11.35210 -11.21671 -10.84263 -10.63378 -10.56364 -10.40649 -10.09764 -10.00326 -9.94084 -9.76689 -9.49628 -8.96316 -8.64311 -6.91393 -5.95592 -3.41820 2.72946 3.09903 3.27738 3.35411 3.36380 3.74529 4.21603 4.34969 4.47400 4.60541 4.63045 4.68142 4.76043 4.84537 4.89683 5.05585 5.21225 5.26436 5.34262 5.37769 5.41905 5.52095 5.54233 5.64234 5.69416 5.74582 5.86483 5.90699 5.92087 6.02119 6.04809 6.14483 6.15095 6.25845 6.31328 6.42769 6.46399 6.67742 7.10427 7.45856 7.56454 7.61821 8.25044 8.30813 9.00920 9.62924 10.18180 11.13338 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.003582 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.084338 B = 7814.041688 C = 9265.724132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C -0.106 4.106 4 C 0.511 3.489 5 O -0.534 6.534 6 N -0.726 5.726 7 C 0.126 3.874 8 C -0.155 4.155 9 H 0.101 0.899 10 C 0.154 3.846 11 N -0.591 5.591 12 C -0.261 4.261 13 H 0.069 0.931 14 C 0.006 3.994 15 N -0.901 5.901 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.169 3.831 21 C -0.178 4.178 22 C 0.300 3.700 23 F -0.199 7.199 24 F -0.214 7.214 25 C -0.180 4.180 26 C -0.153 4.153 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.257 0.743 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -9.726 5.582 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.297 3.703 5 O -0.410 6.410 6 N -0.379 5.379 7 C 0.002 3.998 8 C -0.176 4.176 9 H 0.119 0.881 10 C 0.026 3.974 11 N -0.313 5.313 12 C -0.390 4.390 13 H 0.086 0.914 14 C -0.193 4.193 15 N -0.544 5.544 16 Si 0.736 3.264 17 H -0.212 1.212 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.043 3.957 21 C -0.218 4.218 22 C 0.263 3.737 23 F -0.180 7.180 24 F -0.195 7.195 25 C -0.217 4.217 26 C -0.191 4.191 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.516 -10.094 4.831 16.057 hybrid contribution 0.536 0.845 0.785 1.272 sum -10.980 -9.249 5.616 15.416 Atomic orbital electron populations 1.21277 0.91876 1.01977 1.01703 1.21023 0.94870 0.89488 1.05841 1.21221 1.02721 0.96085 0.94566 1.20610 0.77590 0.80835 0.91223 1.90697 1.45677 1.58249 1.46399 1.46009 1.61830 1.19551 1.10511 1.21282 1.01032 0.93856 0.83638 1.22965 1.02773 0.96396 0.95510 0.88081 1.20907 0.87363 0.89538 0.99547 1.44072 1.60407 1.15032 1.11743 1.19149 1.09238 1.24058 0.86584 0.91350 1.25106 0.95966 1.01433 0.96783 1.69985 1.25233 1.38648 1.20552 0.86246 0.78884 0.79912 0.81393 1.21236 1.21446 1.20367 1.20791 0.87610 1.00418 0.86908 1.23206 1.02946 0.92419 1.03265 1.21043 0.73835 0.92438 0.86383 1.92968 1.79815 1.75048 1.70203 1.92954 1.36820 1.96940 1.92763 1.23167 1.02184 1.01132 0.95206 1.22882 1.02370 1.00572 0.93226 0.91707 0.92591 0.92558 0.88686 0.88456 0.76257 0.91205 0.90849 0.94993 0.91649 0.93295 0.87841 0.95062 0.90539 0.89636 0.88841 0.88865 0.88932 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.70 37.16 0.36 -0.70 16 2 C -0.11 -1.12 1.61 -154.51 -0.25 -1.37 16 3 C -0.11 -1.02 5.65 -27.88 -0.16 -1.18 16 4 C 0.51 6.72 7.72 -10.98 -0.08 6.64 16 5 O -0.53 -8.91 15.09 5.56 0.08 -8.83 16 6 N -0.73 -9.22 5.33 -60.29 -0.32 -9.55 16 7 C 0.13 1.90 4.83 -4.04 -0.02 1.88 16 8 C -0.15 -2.51 2.03 -90.50 -0.18 -2.70 16 9 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 10 C 0.15 2.91 5.40 -3.71 -0.02 2.89 16 11 N -0.59 -13.57 3.00 -172.58 -0.52 -14.09 16 12 C -0.26 -6.56 9.60 -15.06 -0.14 -6.71 16 13 H 0.07 1.65 7.87 -52.49 -0.41 1.24 16 14 C 0.01 0.16 4.98 -17.43 -0.09 0.08 16 15 N -0.90 -24.66 11.05 55.49 0.61 -24.05 16 16 Si 0.91 20.31 29.58 -169.99 -5.03 15.28 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.17 3.78 5.07 -3.93 -0.02 3.76 16 21 C -0.18 -3.26 5.60 -26.83 -0.15 -3.41 16 22 C 0.30 5.31 1.63 -26.69 -0.04 5.27 16 23 F -0.20 -3.85 15.73 2.25 0.04 -3.81 16 24 F -0.21 -3.71 16.41 2.25 0.04 -3.68 16 25 C -0.18 -1.55 9.90 -26.73 -0.26 -1.81 16 26 C -0.15 -1.63 8.95 -26.73 -0.24 -1.87 16 27 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 28 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.79 7.94 -51.93 -0.41 0.38 16 31 H 0.10 0.76 8.12 -51.92 -0.42 0.34 16 32 H 0.40 4.32 7.70 -40.82 -0.31 4.01 16 33 H 0.07 1.10 7.63 -51.93 -0.40 0.70 16 34 H 0.07 1.22 7.97 -51.93 -0.41 0.80 16 35 H 0.03 0.66 7.92 -51.93 -0.41 0.24 16 36 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.10 2.57 5.98 -51.93 -0.31 2.25 16 39 H 0.03 0.76 7.92 -51.93 -0.41 0.34 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -29.38 365.72 -8.11 -37.49 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.22 Total: 4.95 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.30 Total: 0.77 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.23 Total: -47.69 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.38 -8.11 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754743532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.738 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds