Wall clock time and date at job start Tue Mar 31 2020 10:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00072 * 2 1 4 4 H 1.48499 * 109.47139 * 240.00382 * 3 2 1 5 5 H 1.48500 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46919 * 120.00783 * 3 2 1 7 7 C 1.38813 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00557 * 186.28936 * 7 2 1 9 9 N 1.36945 * 119.99605 * 6.28178 * 7 2 1 10 10 C 1.48289 * 128.20375 * 196.58650 * 9 7 2 11 11 H 1.09006 * 112.21129 * 343.26705 * 10 9 7 12 12 C 1.54609 * 104.25953 * 221.00933 * 10 9 7 13 13 C 1.55900 * 104.90182 * 334.85077 * 12 10 9 14 14 C 1.48290 * 128.21270 * 15.83489 * 9 7 2 15 15 H 1.09001 * 112.20944 * 16.72897 * 14 9 7 16 16 C 1.53699 * 107.27495 * 253.19164 * 14 9 7 17 17 C 1.53143 * 108.87780 * 295.99290 * 16 14 9 18 18 H 1.09003 * 109.43882 * 173.96215 * 17 16 14 19 19 C 1.53007 * 109.43579 * 293.86864 * 17 16 14 20 20 N 1.46494 * 109.46956 * 299.52756 * 19 17 16 21 21 C 1.34783 * 120.00199 * 179.97438 * 20 19 17 22 22 O 1.21288 * 119.99421 * 0.02562 * 21 20 19 23 23 C 1.50694 * 120.00507 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47209 * 180.02562 * 23 21 20 25 25 C 1.53003 * 109.46878 * 180.02562 * 24 23 21 26 26 F 1.39894 * 109.47180 * 65.00326 * 25 24 23 27 27 F 1.39898 * 109.47084 * 185.00317 * 25 24 23 28 28 C 1.53146 * 109.68954 * 53.89205 * 17 16 14 29 29 H 0.97007 * 120.00197 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.38310 * 93.68437 * 12 10 9 31 31 H 1.09000 * 110.38378 * 216.04700 * 12 10 9 32 32 H 1.08999 * 110.40128 * 241.61881 * 13 12 10 33 33 H 1.08994 * 111.08450 * 118.75458 * 13 12 10 34 34 H 1.08999 * 109.57465 * 55.81076 * 16 14 9 35 35 H 1.09004 * 109.57250 * 176.05577 * 16 14 9 36 36 H 1.08998 * 109.46658 * 59.52960 * 19 17 16 37 37 H 1.09004 * 109.46994 * 179.52714 * 19 17 16 38 38 H 0.97000 * 120.00541 * 0.02562 * 20 19 17 39 39 H 1.09000 * 109.47096 * 300.00623 * 23 21 20 40 40 H 1.09005 * 109.46809 * 60.00152 * 23 21 20 41 41 H 1.09000 * 109.47498 * 300.00252 * 24 23 21 42 42 H 1.08999 * 109.46656 * 60.00659 * 24 23 21 43 43 H 1.09006 * 109.47260 * 305.00134 * 25 24 23 44 44 H 1.08996 * 109.57109 * 65.93024 * 28 17 16 45 45 H 1.09003 * 109.56941 * 186.17184 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0854 -1.2051 0.1019 9 7 1.3317 -2.3845 -0.1308 10 6 1.8099 -3.7547 0.1734 11 1 2.8956 -3.8028 0.2587 12 6 1.2644 -4.6154 -0.9894 13 6 0.0122 -3.8437 -1.5062 14 6 -0.0606 -2.5967 -0.5952 15 1 -0.4573 -1.7269 -1.1189 16 6 -0.9021 -2.9628 0.6377 17 6 -0.3988 -4.2938 1.2037 18 1 -0.9164 -4.5094 2.1385 19 6 -0.6775 -5.4127 0.1979 20 7 -2.1199 -5.5075 -0.0397 21 6 -2.6027 -6.4294 -0.8963 22 8 -1.8428 -7.1807 -1.4700 23 6 -4.0864 -6.5266 -1.1413 24 6 -4.3650 -7.6455 -2.1469 25 6 -5.8715 -7.7437 -2.3960 26 9 -6.3194 -6.5711 -3.0135 27 9 -6.1365 -8.8384 -3.2259 28 6 1.1079 -4.2072 1.4637 29 1 -0.4851 0.8401 0.0004 30 1 2.0094 -4.7011 -1.7803 31 1 0.9774 -5.6031 -0.6284 32 1 -0.8844 -4.4524 -1.3888 33 1 0.1369 -3.5466 -2.5474 34 1 -0.8014 -2.1835 1.3931 35 1 -1.9490 -3.0591 0.3498 36 1 -0.1683 -5.1928 -0.7404 37 1 -0.3119 -6.3590 0.5966 38 1 -2.7276 -4.9064 0.4188 39 1 -4.5959 -6.7466 -0.2031 40 1 -4.4516 -5.5801 -1.5398 41 1 -3.8555 -7.4260 -3.0851 42 1 -3.9999 -8.5918 -1.7478 43 1 -6.3891 -7.8746 -1.4457 44 1 1.3006 -3.4849 2.2568 45 1 1.4838 -5.1859 1.7620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754832181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:25 Heat of formation + Delta-G solvation = -36.031632 kcal Electronic energy + Delta-G solvation = -27941.284820 eV Core-core repulsion = 23826.291784 eV Total energy + Delta-G solvation = -4114.993037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.17226 -47.18455 -41.22574 -39.11865 -34.81040 -33.93053 -32.86788 -31.39670 -30.39797 -29.96215 -27.78611 -26.08116 -23.65852 -23.29109 -22.45817 -20.62207 -20.44525 -19.46800 -18.74225 -17.88890 -17.66449 -17.12767 -16.87465 -16.36991 -15.75538 -15.59131 -14.93781 -14.64784 -14.14097 -14.01571 -13.66142 -13.51067 -13.28498 -13.02443 -12.84748 -12.70647 -12.57832 -12.36663 -11.97871 -11.72155 -11.53351 -11.45850 -11.40801 -11.24622 -11.13656 -10.82910 -10.74254 -10.59255 -10.20537 -9.94673 -9.70419 -9.54551 -9.46054 -9.38274 -9.22968 -8.62662 -8.14911 -6.80533 -5.77962 -3.13821 2.71548 3.17960 3.37427 3.42725 3.43113 3.69520 4.01971 4.21104 4.34110 4.45323 4.79172 4.87883 5.05800 5.21313 5.24720 5.30101 5.43981 5.47700 5.57815 5.59083 5.70960 5.75121 5.81699 5.90906 6.04145 6.07259 6.15312 6.24967 6.41305 6.46346 6.55259 6.61891 6.69210 6.77337 6.82627 6.91034 7.05092 7.09583 7.53724 7.57057 7.67734 7.74875 8.23880 8.33933 9.12860 9.74465 10.54196 11.33721 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.003054 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.087084 B = 9166.159271 C = 9818.123322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.074 0.926 9 N -0.584 5.584 10 C 0.148 3.852 11 H 0.067 0.933 12 C -0.160 4.160 13 C -0.174 4.174 14 C 0.182 3.818 15 H 0.110 0.890 16 C -0.110 4.110 17 C -0.087 4.087 18 H 0.049 0.951 19 C 0.003 3.997 20 N -0.718 5.718 21 C 0.509 3.491 22 O -0.547 6.547 23 C -0.144 4.144 24 C -0.155 4.155 25 C 0.261 3.739 26 F -0.206 7.206 27 F -0.207 7.207 28 C -0.121 4.121 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.194 0.806 37 H 0.046 0.954 38 H 0.396 0.604 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 -13.514 0.315 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.092 0.908 9 N -0.304 5.304 10 C 0.040 3.960 11 H 0.085 0.915 12 C -0.198 4.198 13 C -0.213 4.213 14 C 0.075 3.925 15 H 0.128 0.872 16 C -0.150 4.150 17 C -0.106 4.106 18 H 0.068 0.932 19 C -0.116 4.116 20 N -0.369 5.369 21 C 0.294 3.706 22 O -0.425 6.425 23 C -0.185 4.185 24 C -0.193 4.193 25 C 0.208 3.792 26 F -0.187 7.187 27 F -0.188 7.188 28 C -0.161 4.161 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.210 0.790 37 H 0.064 0.936 38 H 0.231 0.769 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.474 -13.740 -0.096 16.690 hybrid contribution -0.061 1.165 0.547 1.288 sum -9.535 -12.575 0.451 15.788 Atomic orbital electron populations 1.69826 1.04865 1.25167 1.56119 1.24842 0.95647 0.97651 1.02021 0.86239 0.78558 0.83263 0.77902 1.21226 1.21663 1.21209 1.18953 0.90328 0.82292 1.43493 0.90850 1.45156 1.11168 0.99994 1.74121 1.21558 0.96329 0.86872 0.91266 0.91480 1.23628 0.97574 0.99199 0.99395 1.23827 0.97473 0.99799 1.00152 1.21455 0.85679 0.94223 0.91158 0.87243 1.22065 0.96953 0.94837 1.01116 1.21277 0.97162 0.95630 0.96572 0.93222 1.25217 0.80135 0.97850 1.08378 1.46335 1.09992 1.35877 1.44673 1.20317 0.90177 0.80592 0.79475 1.90703 1.59750 1.42707 1.49379 1.21592 0.94877 1.01100 1.00898 1.22396 0.92634 1.01650 1.02668 1.21966 0.96353 0.71387 0.89535 1.92997 1.90927 1.49248 1.85545 1.92988 1.95221 1.55011 1.75620 1.22129 0.94324 0.99444 1.00233 0.93715 0.92642 0.89303 0.89027 0.93024 0.90719 0.94524 0.79048 0.93620 0.76937 0.88508 0.87866 0.88485 0.88002 0.87265 0.91645 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.00 10.49 55.49 0.58 -24.42 16 2 C 0.00 -0.13 5.45 -17.43 -0.09 -0.22 16 3 Si 0.91 21.37 29.56 -169.99 -5.02 16.34 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -5.89 10.39 -15.06 -0.16 -6.05 16 8 H 0.07 1.91 7.84 -52.49 -0.41 1.49 16 9 N -0.58 -13.86 2.82 -152.76 -0.43 -14.29 16 10 C 0.15 2.90 4.32 -65.73 -0.28 2.62 16 11 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 12 C -0.16 -2.82 5.75 -24.34 -0.14 -2.96 16 13 C -0.17 -3.26 5.83 -24.34 -0.14 -3.41 16 14 C 0.18 3.98 3.11 -65.74 -0.20 3.78 16 15 H 0.11 2.80 6.28 -51.93 -0.33 2.47 16 16 C -0.11 -2.13 5.17 -26.29 -0.14 -2.27 16 17 C -0.09 -1.44 2.76 -90.47 -0.25 -1.69 16 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 19 C 0.00 0.05 2.67 -4.04 -0.01 0.03 16 20 N -0.72 -9.20 4.38 -60.29 -0.26 -9.46 16 21 C 0.51 6.51 7.59 -10.99 -0.08 6.42 16 22 O -0.55 -9.01 15.98 5.55 0.09 -8.93 16 23 C -0.14 -1.22 5.62 -27.89 -0.16 -1.37 16 24 C -0.16 -1.34 4.73 -26.73 -0.13 -1.47 16 25 C 0.26 2.02 5.29 37.16 0.20 2.22 16 26 F -0.21 -2.05 17.02 2.25 0.04 -2.01 16 27 F -0.21 -2.06 17.34 2.25 0.04 -2.02 16 28 C -0.12 -2.14 5.37 -26.29 -0.14 -2.28 16 29 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.44 4.83 -51.93 -0.25 1.19 16 32 H 0.09 1.58 3.96 -51.93 -0.21 1.37 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.71 7.99 -51.93 -0.41 1.30 16 35 H 0.04 0.63 6.75 -51.93 -0.35 0.27 16 36 H 0.19 3.18 1.12 -165.05 -0.19 2.99 16 37 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 38 H 0.40 4.34 7.35 -40.82 -0.30 4.04 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 41 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -30.22 344.64 -8.14 -38.35 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.63 Total: 7.89 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.73 Total: -6.65 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.11 Total: -48.17 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.22 -8.14 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754832181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.320 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds