Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 119.99372 * 2 1 4 4 H 1.48500 * 109.47258 * 239.99708 * 3 2 1 5 5 H 1.48499 * 109.47556 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47136 * 120.00109 * 3 2 1 7 7 C 1.38810 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99508 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00156 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00026 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47139 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.88822 * 57.43000 * 12 11 10 14 14 C 1.55153 * 111.00503 * 293.54399 * 12 11 10 15 15 C 1.54323 * 103.10236 * 206.33608 * 14 12 11 16 16 N 1.47486 * 107.03754 * 22.24109 * 15 14 12 17 17 C 1.34778 * 125.59413 * 181.00840 * 16 15 14 18 18 O 1.21283 * 119.99795 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00167 * 0.02562 * 17 16 15 20 20 C 1.52995 * 109.47036 * 180.02562 * 19 17 16 21 21 C 1.53784 * 113.61417 * 272.49152 * 20 19 17 22 22 C 1.53781 * 87.08414 * 220.02161 * 21 20 19 23 23 F 1.39896 * 113.61476 * 270.88940 * 22 21 20 24 24 F 1.39901 * 113.68847 * 139.99053 * 22 21 20 25 25 C 1.53781 * 87.08033 * 25.43604 * 22 21 20 26 26 C 1.47428 * 108.75727 * 1.02624 * 16 15 14 27 27 H 0.96995 * 120.00198 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00182 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47500 * 60.00303 * 10 9 7 30 30 H 1.09005 * 109.47370 * 300.00157 * 10 9 7 31 31 H 1.08995 * 109.47600 * 60.00087 * 11 10 9 32 32 H 1.09001 * 109.47077 * 299.99498 * 11 10 9 33 33 H 1.09002 * 110.72030 * 324.78875 * 14 12 11 34 34 H 1.09003 * 110.72184 * 87.88526 * 14 12 11 35 35 H 1.09000 * 109.88693 * 141.69901 * 15 14 12 36 36 H 1.09005 * 109.88012 * 262.86516 * 15 14 12 37 37 H 1.09008 * 109.46920 * 300.00630 * 19 17 16 38 38 H 1.09000 * 109.46934 * 60.00192 * 19 17 16 39 39 H 1.08996 * 112.85437 * 43.80530 * 20 19 17 40 40 H 1.08997 * 113.61356 * 334.57454 * 21 20 19 41 41 H 1.09008 * 113.60930 * 105.47089 * 21 20 19 42 42 H 1.08998 * 113.61579 * 220.02312 * 25 22 21 43 43 H 1.09001 * 113.69580 * 89.12117 * 25 22 21 44 44 H 1.09000 * 110.36462 * 217.05803 * 26 16 15 45 45 H 1.08996 * 110.46287 * 94.77884 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0641 -4.8197 -0.0021 12 6 1.8292 -6.1446 -0.0026 13 1 2.4983 -6.2074 0.8556 14 6 2.6083 -6.3364 -1.3306 15 6 2.7164 -7.8709 -1.4543 16 7 1.6341 -8.4478 -0.6351 17 6 1.3969 -9.7632 -0.4625 18 8 0.4743 -10.1265 0.2359 19 6 2.2780 -10.7827 -1.1373 20 6 1.7957 -12.1900 -0.7799 21 6 2.4076 -12.7394 0.5195 22 6 2.5150 -14.0958 -0.1971 23 9 1.3761 -14.8958 -0.0563 24 9 3.7007 -14.7850 0.0790 25 6 2.5543 -13.3067 -1.5165 26 6 0.8548 -7.3485 -0.0370 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6856 -3.7149 0.8878 30 1 2.6843 -3.7140 -0.8922 31 1 0.4371 -4.7614 -0.8917 32 1 0.4378 -4.7626 0.8883 33 1 2.0497 -5.9203 -2.1690 34 1 3.5979 -5.8841 -1.2659 35 1 2.5953 -8.1684 -2.4959 36 1 3.6843 -8.2056 -1.0811 37 1 2.2302 -10.6459 -2.2177 38 1 3.3065 -10.6541 -0.8000 39 1 0.7116 -12.2916 -0.8308 40 1 3.3732 -12.2990 0.7677 41 1 1.7144 -12.7437 1.3608 42 1 1.9795 -13.7690 -2.3190 43 1 3.5595 -13.0208 -1.8262 44 1 0.5412 -7.6117 0.9731 45 1 -0.0129 -7.1166 -0.6546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754920514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = -115.007471 kcal Electronic energy + Delta-G solvation = -25764.488681 eV Core-core repulsion = 21646.070995 eV Total energy + Delta-G solvation = -4118.417686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.17132 -47.50718 -40.44611 -38.74943 -37.50688 -35.17555 -33.09548 -31.24398 -30.34939 -29.59786 -27.32827 -26.72565 -24.44862 -23.38203 -22.89258 -21.54189 -20.40904 -20.18005 -19.40466 -17.76535 -17.42013 -17.14522 -16.96919 -16.71034 -16.26951 -15.59816 -15.46909 -14.73421 -14.45182 -14.36400 -14.13941 -13.88289 -13.78108 -13.65502 -13.38935 -13.29194 -13.13822 -12.99389 -12.76976 -12.52904 -12.22459 -11.77031 -11.68989 -11.60759 -11.39329 -11.29667 -11.09394 -10.84704 -10.82685 -10.69235 -10.51788 -10.36496 -10.09767 -10.00104 -9.69603 -8.88198 -8.84279 -6.93467 -5.77558 -3.06522 2.40130 2.70839 3.06937 3.35886 3.42773 3.47016 3.48352 3.79046 3.87871 3.89155 4.24688 4.44759 4.56155 4.60959 4.68776 4.78552 4.86911 4.92085 4.97009 5.03676 5.04879 5.18831 5.24354 5.31302 5.35168 5.35765 5.52421 5.57992 5.63418 5.76069 5.79306 5.80690 5.86442 6.05741 6.07817 6.21558 6.33676 6.35979 6.81041 6.85922 7.29769 7.67623 7.93125 8.41506 9.52208 10.10859 10.44912 11.45282 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.048288 B = 0.001763 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.717678 B =15881.313692 C =16111.679881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.084 0.916 14 C -0.128 4.128 15 C 0.099 3.901 16 N -0.619 5.619 17 C 0.526 3.474 18 O -0.541 6.541 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.159 4.159 22 C 0.252 3.748 23 F -0.179 7.179 24 F -0.193 7.193 25 C -0.162 4.162 26 C 0.109 3.891 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 -27.753 -4.656 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.103 0.897 14 C -0.166 4.166 15 C -0.024 4.024 16 N -0.354 5.354 17 C 0.314 3.686 18 O -0.418 6.418 19 C -0.164 4.164 20 C -0.107 4.107 21 C -0.197 4.197 22 C 0.216 3.784 23 F -0.160 7.160 24 F -0.174 7.174 25 C -0.200 4.200 26 C -0.013 4.013 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.934 -27.956 -4.264 29.117 hybrid contribution 0.236 0.807 0.012 0.840 sum 7.170 -27.149 -4.252 28.400 Atomic orbital electron populations 1.69651 1.05113 1.25788 1.57683 1.24759 0.95550 0.97745 1.03042 0.86254 0.78505 0.83506 0.77829 1.21274 1.21667 1.21276 1.19181 0.90986 0.84220 1.42802 0.91260 1.42369 1.05907 1.00083 1.89530 1.20619 0.93467 0.85458 0.97713 1.21670 0.98668 0.92538 1.02541 1.22331 0.96861 0.94158 0.97980 0.89736 1.22741 1.02208 0.93034 0.98627 1.22218 0.90229 0.94927 0.95017 1.48693 1.32123 1.05154 1.49404 1.20234 0.85199 0.81673 0.81448 1.90723 1.31884 1.79475 1.39723 1.21589 1.00038 0.92501 1.02313 1.22180 1.01608 0.92296 0.94662 1.24180 1.04109 0.91670 0.99726 1.22088 0.71734 0.84656 0.99935 1.93025 1.50073 1.76286 1.96637 1.93011 1.46726 1.82759 1.94864 1.24191 1.03920 0.95694 0.96193 1.22351 0.94500 0.85330 0.99151 0.93448 0.78305 0.96559 0.96297 0.91575 0.91509 0.90023 0.89558 0.91280 0.91312 0.88104 0.88380 0.86707 0.87116 0.88412 0.88613 0.86817 0.90408 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.43 5.60 -59.91 -0.34 -18.77 16 10 C 0.16 2.95 6.11 -4.05 -0.02 2.92 16 11 C -0.12 -1.71 4.84 -26.73 -0.13 -1.84 16 12 C -0.09 -1.06 3.07 -88.47 -0.27 -1.33 16 13 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.13 -1.20 5.58 -24.90 -0.14 -1.34 16 15 C 0.10 0.73 6.52 -2.81 -0.02 0.72 16 16 N -0.62 -6.18 3.34 -170.14 -0.57 -6.75 16 17 C 0.53 5.46 7.85 -10.99 -0.09 5.38 16 18 O -0.54 -7.72 16.01 5.55 0.09 -7.63 16 19 C -0.12 -0.75 4.73 -27.89 -0.13 -0.88 16 20 C -0.09 -0.59 3.13 -89.80 -0.28 -0.87 16 21 C -0.16 -1.11 7.42 -25.92 -0.19 -1.31 16 22 C 0.25 1.96 3.27 -25.92 -0.08 1.87 16 23 F -0.18 -1.76 17.38 2.25 0.04 -1.72 16 24 F -0.19 -1.75 17.41 2.25 0.04 -1.71 16 25 C -0.16 -0.83 7.43 -25.91 -0.19 -1.02 16 26 C 0.11 1.24 6.38 -2.52 -0.02 1.22 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.36 7.51 -51.93 -0.39 -0.03 16 31 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 34 H 0.09 0.77 8.13 -51.93 -0.42 0.34 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.10 0.41 7.84 -51.93 -0.41 0.01 16 39 H 0.11 0.96 7.67 -51.93 -0.40 0.56 16 40 H 0.11 0.61 7.90 -51.93 -0.41 0.20 16 41 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.11 0.38 8.10 -51.93 -0.42 -0.04 16 44 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 45 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -33.47 373.78 -8.58 -42.05 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.36 Total: 3.00 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.81 Total: -3.86 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.18 Total: -53.00 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.47 -8.58 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754920514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.958 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds