Wall clock time and date at job start Tue Mar 31 2020 11:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00587 * 2 1 4 4 H 1.48500 * 109.47491 * 240.00682 * 3 2 1 5 5 H 1.48506 * 109.47171 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47358 * 119.99889 * 3 2 1 7 7 C 1.38819 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99742 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00117 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47635 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47225 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88541 * 308.88081 * 12 11 10 14 14 C 1.55405 * 111.06990 * 72.66748 * 12 11 10 15 15 C 1.54325 * 102.82616 * 153.48436 * 14 12 11 16 16 N 1.47018 * 107.40412 * 337.97548 * 15 14 12 17 17 C 1.34777 * 125.64981 * 178.82520 * 16 15 14 18 18 O 1.21275 * 120.00167 * 180.02562 * 17 16 15 19 19 C 1.50694 * 119.99872 * 0.02817 * 17 16 15 20 20 C 1.53000 * 109.47301 * 179.97438 * 19 17 16 21 21 C 1.53790 * 113.61429 * 274.13601 * 20 19 17 22 22 C 1.53957 * 87.01639 * 220.04713 * 21 20 19 23 23 F 1.39902 * 113.53798 * 270.80778 * 22 21 20 24 24 F 1.39907 * 113.73729 * 139.94948 * 22 21 20 25 25 C 1.53777 * 87.11394 * 25.36394 * 22 21 20 26 26 C 1.47426 * 108.70517 * 358.86539 * 16 15 14 27 27 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00060 * 0.02562 * 9 7 2 29 29 H 1.09006 * 109.46897 * 60.00029 * 10 9 7 30 30 H 1.09000 * 109.47120 * 300.00846 * 10 9 7 31 31 H 1.09007 * 109.46749 * 60.00649 * 11 10 9 32 32 H 1.09000 * 109.47395 * 300.00479 * 11 10 9 33 33 H 1.09000 * 110.69068 * 35.19694 * 14 12 11 34 34 H 1.09002 * 110.85092 * 271.84688 * 14 12 11 35 35 H 1.09002 * 109.88192 * 218.47989 * 15 14 12 36 36 H 1.09000 * 109.88128 * 97.46841 * 15 14 12 37 37 H 1.08997 * 109.47569 * 299.99781 * 19 17 16 38 38 H 1.09007 * 109.47441 * 59.99852 * 19 17 16 39 39 H 1.08997 * 112.84811 * 45.33393 * 20 19 17 40 40 H 1.08997 * 113.61195 * 334.56687 * 21 20 19 41 41 H 1.09001 * 113.61180 * 105.46820 * 21 20 19 42 42 H 1.09002 * 113.61405 * 220.08826 * 25 22 21 43 43 H 1.08997 * 113.61580 * 89.18627 * 25 22 21 44 44 H 1.08999 * 110.36956 * 142.96999 * 26 16 15 45 45 H 1.09003 * 110.36599 * 265.28903 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0635 -4.8197 -0.0021 12 6 1.8285 -6.1448 -0.0026 13 1 2.5763 -6.1614 -0.7954 14 6 2.4820 -6.4132 1.3816 15 6 2.5740 -7.9531 1.4242 16 7 1.5800 -8.4794 0.4774 17 6 1.3647 -9.7822 0.2079 18 8 0.5146 -10.1029 -0.5954 19 6 2.1802 -10.8406 0.9048 20 6 1.7391 -12.2241 0.4230 21 6 0.5396 -12.7932 1.1992 22 6 1.2516 -14.1570 1.1407 23 9 0.9315 -14.9061 0.0033 24 9 1.1506 -14.8963 2.3242 25 6 2.5700 -13.3758 1.0129 26 6 0.8583 -7.3459 -0.1292 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0005 29 1 2.6851 -3.7151 0.8879 30 1 2.6838 -3.7142 -0.8921 31 1 0.4366 -4.7614 -0.8919 32 1 0.4371 -4.7626 0.8881 33 1 1.8466 -6.0423 2.1858 34 1 3.4746 -5.9659 1.4352 35 1 2.3530 -8.3099 2.4302 36 1 3.5732 -8.2731 1.1286 37 1 3.2359 -10.6953 0.6758 38 1 2.0285 -10.7658 1.9817 39 1 1.6242 -12.2784 -0.6596 40 1 0.4436 -12.3937 2.2087 41 1 -0.3958 -12.7636 0.6404 42 1 3.2713 -13.8159 0.3040 43 1 3.0301 -13.1359 1.9714 44 1 0.6429 -7.5508 -1.1778 45 1 -0.0641 -7.1476 0.4167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754920515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:08 Heat of formation + Delta-G solvation = -115.209134 kcal Electronic energy + Delta-G solvation = -25744.864936 eV Core-core repulsion = 21626.438505 eV Total energy + Delta-G solvation = -4118.426431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.16786 -47.50545 -40.46251 -38.74761 -37.49746 -35.18337 -33.10034 -31.25190 -30.35498 -29.59718 -27.33114 -26.72575 -24.45786 -23.38090 -22.88439 -21.50682 -20.40839 -20.22789 -19.42564 -17.76410 -17.43585 -17.14130 -16.96767 -16.61864 -16.24524 -16.00086 -14.94112 -14.77743 -14.62497 -14.37301 -14.18595 -13.87997 -13.74674 -13.66448 -13.46998 -13.23918 -13.06685 -12.93593 -12.85491 -12.56743 -12.20865 -11.77382 -11.68974 -11.62011 -11.36093 -11.33256 -11.08619 -10.84791 -10.82697 -10.69161 -10.52645 -10.35582 -10.10438 -10.00146 -9.69443 -8.88009 -8.84256 -6.93413 -5.77515 -3.06373 2.39648 2.71054 3.06669 3.35777 3.42907 3.47130 3.48431 3.79186 3.87873 3.89291 4.25463 4.43651 4.55651 4.60981 4.70800 4.74036 4.88169 4.91951 4.95981 5.03383 5.05325 5.18867 5.24148 5.31260 5.34997 5.35935 5.52665 5.58292 5.63053 5.74984 5.79384 5.80261 5.85813 6.05919 6.06705 6.22362 6.33736 6.36111 6.81301 6.85952 7.30007 7.67825 7.92709 8.41587 9.52324 10.10969 10.45075 11.45358 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.051768 B = 0.001745 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.745356 B =16039.351173 C =16236.634450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.128 4.128 15 C 0.099 3.901 16 N -0.619 5.619 17 C 0.526 3.474 18 O -0.540 6.540 19 C -0.125 4.125 20 C -0.088 4.088 21 C -0.158 4.158 22 C 0.252 3.748 23 F -0.180 7.180 24 F -0.193 7.193 25 C -0.162 4.162 26 C 0.108 3.892 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -28.043 4.978 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.165 4.165 15 C -0.024 4.024 16 N -0.353 5.353 17 C 0.315 3.685 18 O -0.417 6.417 19 C -0.164 4.164 20 C -0.107 4.107 21 C -0.196 4.196 22 C 0.215 3.785 23 F -0.160 7.160 24 F -0.174 7.174 25 C -0.200 4.200 26 C -0.014 4.014 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.021 -28.225 4.539 29.215 hybrid contribution 0.150 0.801 0.084 0.819 sum 6.171 -27.424 4.623 28.487 Atomic orbital electron populations 1.69651 1.05119 1.25781 1.57678 1.24759 0.95549 0.97743 1.03039 0.86254 0.78508 0.83501 0.77829 1.21275 1.21667 1.21275 1.19186 0.90988 0.84223 1.42810 0.91258 1.42367 1.05905 1.00080 1.89532 1.20618 0.93461 0.85471 0.97698 1.21670 0.98672 0.92521 1.02536 1.22383 0.97449 0.94089 0.97454 0.89705 1.22793 1.02721 0.92817 0.98217 1.22118 0.92007 0.95551 0.92755 1.48575 1.38201 1.05365 1.43167 1.20226 0.83929 0.81895 0.82484 1.90722 1.34645 1.80966 1.35404 1.21589 1.01031 0.92338 1.01487 1.22172 0.94663 0.92151 1.01736 1.24202 1.00599 0.91355 1.03472 1.22143 0.99780 0.84698 0.71832 1.93026 1.93847 1.78953 1.50208 1.93012 1.96996 1.80418 1.46933 1.24184 0.95927 0.95441 1.04412 1.22363 0.95315 0.84484 0.99198 0.93450 0.78306 0.96334 0.96558 0.91501 0.91565 0.90056 0.89532 0.91412 0.91360 0.88086 0.88406 0.86757 0.87158 0.88380 0.88592 0.86824 0.90358 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.45 5.60 -59.91 -0.34 -18.79 16 10 C 0.16 2.96 6.16 -4.04 -0.02 2.93 16 11 C -0.12 -1.71 4.84 -26.73 -0.13 -1.84 16 12 C -0.09 -1.06 3.00 -88.33 -0.27 -1.33 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 14 C -0.13 -1.18 5.93 -24.76 -0.15 -1.33 16 15 C 0.10 0.73 6.48 -3.07 -0.02 0.71 16 16 N -0.62 -6.16 3.33 -170.52 -0.57 -6.73 16 17 C 0.53 5.45 7.85 -10.99 -0.09 5.37 16 18 O -0.54 -7.69 16.04 5.56 0.09 -7.60 16 19 C -0.12 -0.75 4.72 -27.89 -0.13 -0.88 16 20 C -0.09 -0.58 3.09 -89.80 -0.28 -0.86 16 21 C -0.16 -1.12 7.44 -25.82 -0.19 -1.31 16 22 C 0.25 1.96 3.27 -25.83 -0.08 1.87 16 23 F -0.18 -1.76 17.38 2.25 0.04 -1.72 16 24 F -0.19 -1.75 17.42 2.25 0.04 -1.71 16 25 C -0.16 -0.83 7.43 -25.92 -0.19 -1.02 16 26 C 0.11 1.23 6.38 -2.53 -0.02 1.22 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 29 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.99 7.98 -51.93 -0.41 0.57 16 33 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.11 0.95 7.73 -51.93 -0.40 0.54 16 40 H 0.11 0.62 7.92 -51.93 -0.41 0.21 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.11 0.38 8.10 -51.93 -0.42 -0.04 16 44 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 45 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -33.48 374.20 -8.58 -42.06 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.37 Total: 2.95 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.81 Total: -3.86 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.18 Total: -53.01 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.48 -8.58 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754920515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.150 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds