Wall clock time and date at job start Tue Mar 31 2020 11:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47053 * 269.99649 * 3 2 1 5 5 H 1.48501 * 109.47098 * 29.99530 * 3 2 1 6 6 H 1.48502 * 109.47431 * 149.99473 * 3 2 1 7 7 C 1.38817 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99558 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00259 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 304.99547 * 11 10 9 13 13 C 1.53000 * 109.47060 * 64.99866 * 11 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46963 * 299.99499 * 14 13 11 16 16 H 1.09002 * 109.47067 * 300.00341 * 15 14 13 17 17 N 1.46496 * 109.47313 * 180.02562 * 15 14 13 18 18 C 1.34773 * 120.00354 * 84.99862 * 17 15 14 19 19 O 1.21282 * 119.99911 * 0.02562 * 18 17 15 20 20 C 1.50703 * 120.00217 * 180.02562 * 18 17 15 21 21 H 1.08999 * 115.55149 * 325.72454 * 20 18 17 22 22 C 1.52993 * 117.49860 * 111.39106 * 20 18 17 23 23 C 1.52995 * 117.49764 * 180.02562 * 20 18 17 24 24 H 1.09000 * 117.50287 * 0.02562 * 23 20 18 25 25 C 1.53007 * 117.49849 * 145.02089 * 23 20 18 26 26 F 1.39901 * 109.46882 * 300.00414 * 25 23 20 27 27 F 1.39900 * 109.46630 * 59.99969 * 25 23 20 28 28 C 1.52997 * 109.47092 * 60.00194 * 15 14 13 29 29 C 1.53002 * 109.46817 * 184.99778 * 11 10 9 30 30 H 0.97002 * 119.99842 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99699 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47117 * 59.99083 * 10 9 7 33 33 H 1.09004 * 109.46581 * 299.99736 * 10 9 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 13 11 10 35 35 H 1.08992 * 109.47399 * 59.99823 * 13 11 10 36 36 H 1.09000 * 109.47437 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.47508 * 59.99571 * 14 13 11 38 38 H 0.97007 * 119.99693 * 264.99991 * 17 15 14 39 39 H 1.08997 * 117.50162 * 214.97719 * 22 20 18 40 40 H 1.09004 * 117.50081 * 0.02562 * 22 20 18 41 41 H 1.08997 * 109.47182 * 179.97438 * 25 23 20 42 42 H 1.09001 * 109.47375 * 180.02562 * 28 15 14 43 43 H 1.09002 * 109.47497 * 59.99850 * 28 15 14 44 44 H 1.09002 * 109.47075 * 299.99262 * 29 11 10 45 45 H 1.08996 * 109.47407 * 60.00219 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.3792 -4.7123 0.8436 13 6 0.2693 -4.8120 -1.3056 14 6 -0.7254 -5.9745 -1.3049 15 6 0.0349 -7.2962 -1.1778 16 1 0.7192 -7.4040 -2.0193 17 7 -0.9175 -8.4094 -1.1777 18 6 -1.3548 -8.9222 -2.3448 19 8 -0.9596 -8.4624 -3.3952 20 6 -2.3349 -10.0670 -2.3447 21 1 -2.2207 -10.7836 -1.5315 22 6 -3.7538 -9.7822 -2.8411 23 6 -2.7928 -10.6050 -3.7018 24 1 -2.3849 -10.1314 -4.5947 25 6 -3.0553 -12.1082 -3.8137 26 9 -1.8826 -12.8099 -3.5143 27 9 -4.0608 -12.4743 -2.9125 28 6 0.8292 -7.3039 0.1298 29 6 1.8244 -6.1411 0.1289 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6852 -3.7150 -0.8879 34 1 -0.2727 -3.8707 -1.3960 35 1 0.9537 -4.9195 -2.1470 36 1 -1.2910 -5.9694 -2.2366 37 1 -1.4098 -5.8667 -0.4634 38 1 -1.2333 -8.7774 -0.3376 39 1 -4.5730 -10.3117 -2.3547 40 1 -3.9783 -8.7669 -3.1681 41 1 -3.3730 -12.3470 -4.8286 42 1 1.3712 -8.2453 0.2201 43 1 0.1449 -7.1961 0.9713 44 1 2.5087 -6.2486 -0.7127 45 1 2.3903 -6.1467 1.0605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754951829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:46 Heat of formation + Delta-G solvation = -128.189984 kcal Electronic energy + Delta-G solvation = -26150.750564 eV Core-core repulsion = 22031.761242 eV Total energy + Delta-G solvation = -4118.989323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.40341 -47.39148 -40.42731 -38.64450 -36.80262 -35.18057 -33.64682 -31.35447 -30.63831 -29.22767 -27.93757 -25.49669 -24.09492 -22.84527 -22.33546 -21.61113 -20.64988 -20.40943 -19.56157 -18.45356 -17.55084 -17.41429 -17.10879 -16.76219 -16.21272 -15.23480 -14.92526 -14.69567 -14.39680 -14.27302 -14.12031 -13.85507 -13.76180 -13.69011 -13.24430 -13.11041 -12.81673 -12.68619 -12.36868 -12.19187 -11.99207 -11.88477 -11.72752 -11.23401 -11.01025 -10.99690 -10.91828 -10.87030 -10.75347 -10.35498 -10.17179 -10.10047 -10.03010 -9.75472 -9.58330 -9.11002 -8.82909 -6.86866 -5.73191 -3.00921 2.16785 2.76922 3.08043 3.37963 3.45736 3.50663 3.52350 3.77497 3.89504 4.12881 4.33368 4.61038 4.62298 4.68083 4.74813 4.78522 4.84116 5.07802 5.16099 5.30930 5.35216 5.40489 5.48900 5.54430 5.56894 5.62736 5.65555 5.70459 5.96513 6.05432 6.10781 6.26326 6.27499 6.28943 6.40572 6.48538 6.59446 6.76679 6.89606 7.00230 7.30163 7.73480 8.01368 8.46407 9.57263 10.16749 10.51288 11.49942 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.032479 B = 0.002051 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.881274 B =13648.213031 C =14093.990845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.157 3.843 11 C -0.095 4.095 12 H 0.070 0.930 13 C -0.107 4.107 14 C -0.126 4.126 15 C 0.144 3.856 16 H 0.088 0.912 17 N -0.719 5.719 18 C 0.543 3.457 19 O -0.536 6.536 20 C -0.172 4.172 21 H 0.129 0.871 22 C -0.126 4.126 23 C -0.194 4.194 24 H 0.146 0.854 25 C 0.293 3.707 26 F -0.201 7.201 27 F -0.204 7.204 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.400 0.600 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.655 -26.986 -4.163 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.145 4.145 14 C -0.164 4.164 15 C 0.041 3.959 16 H 0.106 0.894 17 N -0.369 5.369 18 C 0.329 3.671 19 O -0.413 6.413 20 C -0.193 4.193 21 H 0.147 0.853 22 C -0.163 4.163 23 C -0.213 4.213 24 H 0.164 0.836 25 C 0.239 3.761 26 F -0.182 7.182 27 F -0.186 7.186 28 C -0.161 4.161 29 C -0.146 4.146 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.234 0.766 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.208 -26.552 -4.878 27.942 hybrid contribution 0.054 0.680 0.556 0.880 sum -7.153 -25.872 -4.323 27.188 Atomic orbital electron populations 1.69660 1.05086 1.25552 1.58083 1.24736 0.95534 0.97663 1.03262 0.86189 0.78622 0.83896 0.77496 1.21767 1.21824 1.20815 1.19248 0.91033 0.84279 1.42242 0.91262 1.42386 1.05859 1.00004 1.89387 1.20683 0.93249 0.85510 0.97639 1.21353 0.97712 0.94271 0.98026 0.91182 1.21488 0.97584 0.97920 0.97477 1.21921 0.98603 0.93947 1.01964 1.21130 0.90245 0.85273 0.99264 0.89415 1.46041 1.46672 1.36002 1.08196 1.19447 0.80992 0.82658 0.84031 1.90727 1.57733 1.61516 1.31334 1.22264 0.97622 1.00490 0.98970 0.85338 1.23133 0.91396 1.01822 0.99956 1.23516 1.06814 0.93266 0.97691 0.83595 1.21290 0.73631 0.88615 0.92576 1.93013 1.49665 1.80675 1.94877 1.92970 1.61266 1.92763 1.71572 1.21798 0.98477 0.99320 0.96464 1.21482 0.97323 0.93496 1.02273 0.93587 0.78255 0.96512 0.96404 0.90434 0.92123 0.91930 0.91929 0.76634 0.86435 0.86919 0.86050 0.91724 0.91407 0.91725 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.75 5.33 -59.91 -0.32 -19.07 16 10 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 11 C -0.09 -1.50 2.22 -90.62 -0.20 -1.70 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.70 5.08 -26.73 -0.14 -1.84 16 14 C -0.13 -1.69 5.49 -26.73 -0.15 -1.83 16 15 C 0.14 1.67 2.45 -67.93 -0.17 1.50 16 16 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 17 N -0.72 -6.91 5.08 -53.81 -0.27 -7.18 16 18 C 0.54 6.01 7.58 -10.99 -0.08 5.92 16 19 O -0.54 -8.06 15.92 5.56 0.09 -7.97 16 20 C -0.17 -1.36 5.84 -91.78 -0.54 -1.90 16 21 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.13 -0.81 9.62 -26.72 -0.26 -1.07 16 23 C -0.19 -1.37 5.67 -90.61 -0.51 -1.89 16 24 H 0.15 1.13 7.67 -51.93 -0.40 0.74 16 25 C 0.29 1.78 5.67 37.16 0.21 2.00 16 26 F -0.20 -1.74 17.29 2.25 0.04 -1.70 16 27 F -0.20 -1.48 15.91 2.25 0.04 -1.44 16 28 C -0.12 -1.25 5.39 -26.71 -0.14 -1.39 16 29 C -0.11 -1.33 5.21 -26.70 -0.14 -1.47 16 30 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 10.25 6.85 -40.82 -0.28 9.97 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 1.45 7.18 -51.93 -0.37 1.08 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 2.71 8.60 -40.82 -0.35 2.36 16 39 H 0.12 0.61 7.22 -51.93 -0.37 0.24 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -33.72 371.92 -8.72 -42.44 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.21 Total: 7.45 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.38 Total: -7.96 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.13 Total: -54.11 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.15 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.72 -8.72 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754951829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.755 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds