Wall clock time and date at job start Tue Mar 31 2020 10:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00037 * 2 1 4 4 H 1.48503 * 109.47613 * 270.00188 * 3 2 1 5 5 H 1.48508 * 109.47219 * 30.00089 * 3 2 1 6 6 H 1.48502 * 109.47197 * 149.99931 * 3 2 1 7 7 C 1.38812 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00070 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99753 * 176.92599 * 9 7 2 11 11 C 1.53006 * 112.85065 * 64.44636 * 10 9 7 12 12 N 1.46497 * 109.47582 * 65.58990 * 11 10 9 13 13 C 1.34770 * 120.00180 * 182.64260 * 12 11 10 14 14 O 1.21280 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00093 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47276 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.01374 * 54.30247 * 16 15 13 18 18 C 1.54262 * 110.03448 * 175.68959 * 16 15 13 19 19 C 1.54885 * 104.19671 * 142.89334 * 18 16 15 20 20 C 1.54882 * 102.75210 * 322.06094 * 19 18 16 21 21 C 1.53876 * 110.03400 * 292.91209 * 16 15 13 22 22 F 1.39902 * 110.03105 * 359.97438 * 21 16 15 23 23 F 1.39899 * 110.03201 * 121.42765 * 21 16 15 24 24 C 1.53778 * 113.61884 * 293.24320 * 10 9 7 25 25 C 1.54044 * 86.98506 * 270.84104 * 24 10 9 26 26 C 1.53778 * 87.08073 * 334.56459 * 25 24 10 27 27 H 0.97002 * 119.99555 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00149 * 357.20057 * 9 7 2 29 29 H 1.08994 * 109.47203 * 185.59657 * 11 10 9 30 30 H 1.09000 * 109.46444 * 305.59322 * 11 10 9 31 31 H 0.97003 * 119.99919 * 2.64279 * 12 11 10 32 32 H 1.09001 * 109.46777 * 300.00228 * 15 13 12 33 33 H 1.09006 * 109.46705 * 59.99813 * 15 13 12 34 34 H 1.08997 * 110.48806 * 261.57857 * 18 16 15 35 35 H 1.09004 * 110.48659 * 24.21562 * 18 16 15 36 36 H 1.09004 * 110.75443 * 80.37649 * 19 18 16 37 37 H 1.09002 * 110.75687 * 203.74321 * 19 18 16 38 38 H 1.09004 * 110.49154 * 156.61588 * 20 19 18 39 39 H 1.08997 * 110.49104 * 279.13216 * 20 19 18 40 40 H 1.09007 * 113.61066 * 25.43669 * 24 10 9 41 41 H 1.08995 * 113.61605 * 156.33200 * 24 10 9 42 42 H 1.09006 * 113.62063 * 220.01551 * 25 24 10 43 43 H 1.09004 * 113.69019 * 89.12666 * 25 24 10 44 44 H 1.08994 * 113.61511 * 270.88068 * 26 25 24 45 45 H 1.09007 * 113.69162 * 139.98692 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4691 0.0675 11 6 3.8828 -3.3540 -1.1595 12 7 4.4469 -2.7021 -2.3441 13 6 4.3153 -3.2764 -3.5562 14 8 3.7295 -4.3326 -3.6665 15 6 4.8950 -2.6055 -4.7748 16 6 4.6088 -3.4592 -6.0117 17 1 3.5400 -3.6597 -6.0875 18 6 5.1015 -2.7332 -7.2805 19 6 5.6543 -3.8686 -8.1773 20 6 6.3300 -4.8144 -7.1538 21 6 5.3888 -4.7831 -5.9305 22 9 6.1370 -4.8269 -4.7492 23 9 4.5031 -5.8650 -5.9783 24 6 3.9380 -3.2110 1.4032 25 6 5.1575 -2.4176 1.9094 26 6 5.5951 -2.3043 0.4396 27 1 -0.4849 0.8401 -0.0004 28 1 3.8647 -0.3631 -0.0403 29 1 4.3695 -4.3175 -1.0087 30 1 2.8130 -3.5058 -1.3032 31 1 4.9151 -1.8572 -2.2560 32 1 4.4413 -1.6222 -4.8985 33 1 5.9724 -2.4956 -4.6510 34 1 4.2736 -2.2251 -7.7750 35 1 5.8915 -2.0245 -7.0320 36 1 4.8439 -4.3787 -8.6982 37 1 6.3859 -3.4798 -8.8857 38 1 6.3987 -5.8253 -7.5559 39 1 7.3193 -4.4432 -6.8866 40 1 3.0105 -2.9663 1.9209 41 1 4.1140 -4.2843 1.3326 42 1 5.8381 -3.0076 2.5234 43 1 4.8997 -1.4607 2.3633 44 1 6.2233 -3.1302 0.1062 45 1 6.0049 -1.3285 0.1786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754984974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:03 Heat of formation + Delta-G solvation = -115.178897 kcal Electronic energy + Delta-G solvation = -27900.962110 eV Core-core repulsion = 23782.536991 eV Total energy + Delta-G solvation = -4118.425120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.74883 -46.80496 -39.65210 -38.67476 -37.39498 -33.87676 -33.28437 -31.94096 -30.57497 -28.23944 -27.66335 -25.57949 -25.30212 -23.51971 -21.71845 -21.50544 -20.54546 -19.78919 -18.30006 -17.68261 -17.65865 -16.89745 -16.75400 -16.08875 -15.55577 -15.16390 -14.88630 -14.46167 -14.30533 -14.25681 -14.06874 -13.80566 -13.43664 -13.17226 -13.04945 -12.80732 -12.74486 -12.58765 -12.08759 -11.91843 -11.75693 -11.71103 -11.52342 -11.49560 -11.38960 -11.25367 -10.99696 -10.92691 -10.52735 -10.45169 -10.21132 -10.16660 -9.67738 -9.57646 -9.41673 -8.92099 -8.47351 -7.35187 -5.80822 -3.18212 3.07688 3.30731 3.32399 3.40023 3.54992 3.70696 3.85665 4.09448 4.25066 4.52982 4.71523 4.82171 4.92936 4.99169 5.03232 5.09894 5.13195 5.15184 5.20024 5.32666 5.38739 5.41001 5.43828 5.49265 5.55067 5.64772 5.67820 5.71059 5.83130 5.99554 6.03722 6.05487 6.12990 6.21893 6.27520 6.54844 6.67930 6.84063 6.89748 7.03330 7.95324 7.98247 8.37777 8.67946 9.14639 9.86192 10.04485 11.37191 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.003771 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.020633 B = 7423.671000 C = 8282.319936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.092 0.908 9 N -0.725 5.725 10 C 0.179 3.821 11 C 0.123 3.877 12 N -0.708 5.708 13 C 0.509 3.491 14 O -0.543 6.543 15 C -0.136 4.136 16 C -0.117 4.117 17 H 0.108 0.892 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.165 4.165 21 C 0.295 3.705 22 F -0.197 7.197 23 F -0.191 7.191 24 C -0.148 4.148 25 C -0.130 4.130 26 C -0.146 4.146 27 H 0.259 0.741 28 H 0.363 0.637 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.396 0.604 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.624 -5.227 -13.022 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.110 0.890 9 N -0.367 5.367 10 C 0.086 3.914 11 C -0.003 4.003 12 N -0.357 5.357 13 C 0.295 3.705 14 O -0.421 6.421 15 C -0.176 4.176 16 C -0.137 4.137 17 H 0.127 0.873 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.203 4.203 21 C 0.258 3.742 22 F -0.178 7.178 23 F -0.172 7.172 24 C -0.188 4.188 25 C -0.168 4.168 26 C -0.184 4.184 27 H 0.070 0.930 28 H 0.196 0.804 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.229 0.771 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.920 -6.064 -13.034 21.450 hybrid contribution 0.627 1.591 0.302 1.737 sum 16.548 -4.473 -12.732 21.353 Atomic orbital electron populations 1.69700 1.05094 1.25774 1.57219 1.24646 0.95148 0.97011 1.01996 0.86609 0.79269 0.85305 0.77641 1.21217 1.21799 1.20320 1.18951 0.80207 0.94730 1.42984 0.89047 1.42410 1.03921 1.00919 1.89449 1.20746 0.90795 0.88067 0.91773 1.21774 0.99476 0.94582 0.84436 1.45693 1.57579 1.25552 1.06897 1.20361 0.80041 0.85537 0.84578 1.90714 1.42741 1.22602 1.86002 1.21694 1.03145 1.00447 0.92333 1.22591 1.02733 0.92817 0.95526 0.87327 1.22446 1.01543 0.97650 0.94042 1.22463 1.00503 0.95938 0.97072 1.23414 0.99413 1.02849 0.94606 1.21597 0.84196 0.85801 0.82565 1.92977 1.77061 1.96814 1.50908 1.93022 1.69985 1.57732 1.96468 1.23326 0.99148 0.97935 0.98406 1.22699 0.97815 1.00767 0.95510 1.23187 0.96418 1.01401 0.97391 0.93035 0.80371 0.92657 0.90915 0.77052 0.87912 0.88450 0.89983 0.90334 0.90434 0.90047 0.89179 0.88610 0.90223 0.91031 0.92495 0.90266 0.90044 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.17 27.71 -169.99 -4.71 16.46 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.20 6.56 56.52 0.37 -5.83 16 7 C -0.24 -6.40 9.61 -15.06 -0.14 -6.55 16 8 H 0.09 2.70 7.82 -52.49 -0.41 2.29 16 9 N -0.72 -15.75 4.99 -46.48 -0.23 -15.98 16 10 C 0.18 3.21 0.79 -131.00 -0.10 3.11 16 11 C 0.12 2.27 5.02 -4.04 -0.02 2.25 16 12 N -0.71 -11.69 5.45 -60.30 -0.33 -12.02 16 13 C 0.51 8.57 6.70 -10.99 -0.07 8.50 16 14 O -0.54 -11.23 14.51 5.56 0.08 -11.15 16 15 C -0.14 -1.63 4.63 -27.88 -0.13 -1.76 16 16 C -0.12 -1.35 2.40 -89.50 -0.21 -1.56 16 17 H 0.11 1.45 7.82 -51.93 -0.41 1.05 16 18 C -0.12 -0.90 6.36 -25.08 -0.16 -1.06 16 19 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16 20 C -0.16 -1.40 6.41 -25.02 -0.16 -1.56 16 21 C 0.29 3.77 1.79 -25.55 -0.05 3.72 16 22 F -0.20 -2.92 14.05 2.25 0.03 -2.89 16 23 F -0.19 -3.04 16.74 2.25 0.04 -3.00 16 24 C -0.15 -2.54 7.30 -25.78 -0.19 -2.72 16 25 C -0.13 -1.96 8.00 -25.78 -0.21 -2.17 16 26 C -0.15 -2.12 7.11 -25.92 -0.18 -2.31 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.36 7.72 5.74 -40.82 -0.23 7.49 16 29 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 30 H 0.07 1.61 7.64 -51.93 -0.40 1.22 16 31 H 0.40 5.75 8.33 -40.82 -0.34 5.41 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 0.97 7.66 -51.93 -0.40 0.57 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.49 7.85 -51.93 -0.41 0.09 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 39 H 0.10 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.08 1.57 7.89 -51.92 -0.41 1.16 16 41 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 45 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -33.54 363.17 -7.99 -41.54 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.23 Total: 12.46 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.90 Total: -2.97 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.21 Total: -55.92 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.07 Total: -5.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.54 -7.99 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754984974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.642 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds