Wall clock time and date at job start Tue Mar 31 2020 10:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99691 * 2 1 4 4 H 1.48501 * 109.47241 * 269.99835 * 3 2 1 5 5 H 1.48499 * 109.47072 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47352 * 149.99827 * 3 2 1 7 7 C 1.38808 * 120.00642 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00284 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00455 * 173.93894 * 9 7 2 11 11 C 1.53005 * 112.84550 * 294.81463 * 10 9 7 12 12 N 1.46497 * 109.47140 * 294.03575 * 11 10 9 13 13 C 1.34777 * 119.99609 * 176.09299 * 12 11 10 14 14 O 1.21281 * 120.00525 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99861 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47182 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.01246 * 306.38497 * 16 15 13 18 18 C 1.54265 * 110.03191 * 185.00009 * 16 15 13 19 19 C 1.54886 * 104.31440 * 217.03592 * 18 16 15 20 20 C 1.55239 * 102.58606 * 37.93350 * 19 18 16 21 21 C 1.53865 * 110.03457 * 67.83381 * 16 15 13 22 22 F 1.39907 * 110.03366 * 238.57102 * 21 16 15 23 23 F 1.39904 * 110.03447 * 359.94931 * 21 16 15 24 24 C 1.53782 * 113.61429 * 66.00949 * 10 9 7 25 25 C 1.53954 * 87.01674 * 89.23297 * 24 10 9 26 26 C 1.53772 * 113.61766 * 163.62315 * 10 9 7 27 27 H 0.96996 * 120.00526 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99644 * 353.93174 * 9 7 2 29 29 H 1.09000 * 109.47038 * 174.02736 * 11 10 9 30 30 H 1.09008 * 109.46814 * 54.03241 * 11 10 9 31 31 H 0.96993 * 120.00115 * 356.08592 * 12 11 10 32 32 H 1.08998 * 109.47263 * 59.99925 * 15 13 12 33 33 H 1.08995 * 109.46974 * 299.99960 * 15 13 12 34 34 H 1.08997 * 110.48715 * 335.78251 * 18 16 15 35 35 H 1.09002 * 110.48518 * 98.29157 * 18 16 15 36 36 H 1.08997 * 110.75693 * 156.31860 * 19 18 16 37 37 H 1.08998 * 110.75941 * 279.69641 * 19 18 16 38 38 H 1.09004 * 110.47068 * 203.39871 * 20 19 18 39 39 H 1.08995 * 110.47248 * 80.77232 * 20 19 18 40 40 H 1.09004 * 113.61001 * 203.75301 * 24 10 9 41 41 H 1.08996 * 113.61642 * 334.65926 * 24 10 9 42 42 H 1.08997 * 113.53985 * 270.81106 * 25 24 10 43 43 H 1.09002 * 113.66416 * 139.92796 * 25 24 10 44 44 H 1.09006 * 113.61624 * 25.34315 * 26 10 9 45 45 H 1.09001 * 113.61974 * 156.16815 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0522 -3.6532 -0.1329 11 6 2.7412 -3.8023 -1.4908 12 7 1.7282 -3.8920 -2.5452 13 6 2.1046 -3.9492 -3.8381 14 8 3.2818 -3.9260 -4.1287 15 6 1.0625 -4.0421 -4.9228 16 6 1.7509 -4.0936 -6.2883 17 1 2.4340 -3.2508 -6.3937 18 6 0.6959 -4.0625 -7.4134 19 6 1.2655 -5.0094 -8.4987 20 6 1.9032 -6.1459 -7.6552 21 6 2.5184 -5.4182 -6.4420 22 9 3.8743 -5.1624 -6.6737 23 9 2.3682 -6.1959 -5.2888 24 6 2.9696 -3.9657 1.0611 25 6 1.7600 -4.6689 1.7034 26 6 1.2264 -4.8839 0.2772 27 1 -0.4851 0.8400 0.0004 28 1 0.3598 -2.3904 0.0890 29 1 3.3488 -4.7073 -1.4925 30 1 3.3784 -2.9365 -1.6718 31 1 0.7867 -3.9103 -2.3129 32 1 0.4111 -3.1694 -4.8766 33 1 0.4698 -4.9457 -4.7808 34 1 -0.2620 -4.4330 -7.0485 35 1 0.5880 -3.0519 -7.8073 36 1 0.4668 -5.3963 -9.1315 37 1 2.0218 -4.5010 -9.0967 38 1 2.6782 -6.6563 -8.2271 39 1 1.1403 -6.8529 -7.3292 40 1 3.7889 -4.6419 0.8169 41 1 3.2985 -3.0789 1.6028 42 1 1.1401 -4.0052 2.3060 43 1 2.0151 -5.5951 2.2184 44 1 0.1500 -4.7374 0.1870 45 1 1.5673 -5.8115 -0.1827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754984975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:07 Heat of formation + Delta-G solvation = -120.092161 kcal Electronic energy + Delta-G solvation = -27871.428154 eV Core-core repulsion = 23752.789979 eV Total energy + Delta-G solvation = -4118.638175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.72272 -46.77470 -39.55617 -38.56017 -37.33448 -33.78617 -33.24643 -31.87865 -30.01120 -28.16449 -27.50764 -25.45896 -25.25097 -23.72830 -21.74095 -21.48042 -20.49227 -19.71656 -18.20218 -17.64226 -17.12630 -16.85516 -16.66224 -16.04523 -15.47908 -15.13270 -14.86188 -14.45593 -14.22826 -14.13276 -13.96941 -13.71291 -13.33271 -13.20146 -13.13154 -12.88073 -12.67505 -12.35403 -11.99260 -11.83583 -11.70953 -11.61770 -11.47144 -11.40357 -11.19559 -11.00193 -10.95808 -10.84931 -10.49421 -10.35137 -10.21511 -10.08285 -9.72454 -9.48073 -9.36148 -8.86967 -8.39539 -7.03343 -5.82760 -3.12003 3.14194 3.41682 3.47866 3.48665 3.62847 3.74530 3.89692 4.12517 4.29289 4.54286 4.75430 4.86911 4.97037 5.08668 5.16650 5.19184 5.20958 5.27482 5.30807 5.41236 5.43734 5.47942 5.54950 5.56750 5.58960 5.70654 5.76073 5.81228 5.86292 6.07609 6.10719 6.16162 6.21326 6.33807 6.42336 6.58526 6.74634 6.94138 7.01324 7.12675 7.70492 8.07308 8.36298 8.75245 9.47650 10.01462 10.36938 11.39392 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.003814 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.702786 B = 7340.347304 C = 8405.037616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.174 3.826 11 C 0.122 3.878 12 N -0.704 5.704 13 C 0.509 3.491 14 O -0.548 6.548 15 C -0.136 4.136 16 C -0.116 4.116 17 H 0.108 0.892 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.165 4.165 21 C 0.295 3.705 22 F -0.192 7.192 23 F -0.197 7.197 24 C -0.151 4.151 25 C -0.128 4.128 26 C -0.144 4.144 27 H 0.255 0.745 28 H 0.386 0.614 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.399 0.601 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 -13.309 -13.083 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.004 4.004 12 N -0.353 5.353 13 C 0.295 3.705 14 O -0.426 6.426 15 C -0.176 4.176 16 C -0.136 4.136 17 H 0.126 0.874 18 C -0.157 4.157 19 C -0.159 4.159 20 C -0.203 4.203 21 C 0.258 3.742 22 F -0.173 7.173 23 F -0.177 7.177 24 C -0.191 4.191 25 C -0.166 4.166 26 C -0.182 4.182 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.232 0.768 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.588 -13.135 -13.241 18.660 hybrid contribution -0.117 0.997 0.342 1.060 sum -0.705 -12.138 -12.900 17.727 Atomic orbital electron populations 1.69647 1.05051 1.25682 1.57637 1.24699 0.95453 0.97567 1.02735 0.86239 0.78785 0.83923 0.77562 1.21740 1.21825 1.20700 1.19114 0.91085 0.83663 1.42586 0.91177 1.42048 1.06020 0.99028 1.86857 1.20823 0.92966 0.87378 0.90778 1.21807 0.90697 1.00397 0.87518 1.45681 1.10732 1.73508 1.05417 1.20360 0.89880 0.76434 0.83824 1.90698 1.18643 1.50508 1.82755 1.21687 0.98530 1.05087 0.92300 1.22583 0.98274 0.97284 0.95456 0.87401 1.22446 0.97942 1.00982 0.94354 1.22521 1.00591 0.95516 0.97306 1.23456 1.02049 0.99212 0.95575 1.21586 0.78809 0.90828 0.82956 1.93020 1.35109 1.94762 1.94416 1.92979 1.95439 1.76585 1.52743 1.23339 0.96361 1.00353 0.99080 1.22660 0.98529 0.99486 0.95888 1.23142 0.99850 0.97899 0.97343 0.93546 0.77963 0.93065 0.91388 0.76761 0.87830 0.88440 0.90282 0.90025 0.90022 0.90481 0.89197 0.88586 0.91346 0.90743 0.90069 0.92762 0.91706 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.92 13.07 55.49 0.73 -26.19 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.18 9.06 -15.06 -0.14 -6.32 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -16.12 5.18 -46.48 -0.24 -16.36 16 10 C 0.17 3.25 0.80 -131.01 -0.10 3.15 16 11 C 0.12 2.33 5.03 -4.04 -0.02 2.31 16 12 N -0.70 -12.28 5.45 -60.29 -0.33 -12.61 16 13 C 0.51 8.93 6.73 -10.98 -0.07 8.86 16 14 O -0.55 -11.58 14.58 5.56 0.08 -11.49 16 15 C -0.14 -1.73 4.63 -27.88 -0.13 -1.86 16 16 C -0.12 -1.40 2.40 -89.51 -0.21 -1.61 16 17 H 0.11 1.49 7.80 -51.93 -0.41 1.09 16 18 C -0.12 -0.96 6.35 -25.07 -0.16 -1.12 16 19 C -0.12 -0.86 6.93 -24.55 -0.17 -1.03 16 20 C -0.16 -1.46 6.41 -24.88 -0.16 -1.62 16 21 C 0.29 3.88 1.80 -25.62 -0.05 3.83 16 22 F -0.19 -3.10 16.76 2.25 0.04 -3.06 16 23 F -0.20 -3.01 14.09 2.25 0.03 -2.97 16 24 C -0.15 -2.64 7.29 -25.83 -0.19 -2.83 16 25 C -0.13 -2.02 8.00 -25.83 -0.21 -2.23 16 26 C -0.14 -2.24 7.08 -25.92 -0.18 -2.43 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.39 9.44 7.87 -40.82 -0.32 9.12 16 29 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 30 H 0.07 1.52 7.85 -51.92 -0.41 1.11 16 31 H 0.40 6.36 8.30 -40.82 -0.34 6.02 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.05 7.63 -51.93 -0.40 0.65 16 34 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 39 H 0.10 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 41 H 0.07 1.46 7.86 -51.93 -0.41 1.05 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 45 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -31.98 366.70 -8.37 -40.35 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.29 Total: 12.82 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.89 Total: -3.24 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.16 Total: -55.15 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.07 Total: -6.04 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.98 -8.37 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754984975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.743 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds