Wall clock time and date at job start Tue Mar 31 2020 11:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 120.00418 * 2 1 4 4 H 1.07993 * 120.00063 * 206.50017 * 3 2 1 5 5 C 1.38807 * 119.99728 * 26.49380 * 3 2 1 6 6 N 1.31625 * 120.00331 * 16.00405 * 5 3 2 7 7 Si 1.86798 * 120.00089 * 195.99785 * 5 3 2 8 8 H 1.48501 * 109.47158 * 60.00104 * 7 5 3 9 9 H 1.48495 * 109.47379 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46981 * 300.00466 * 7 5 3 11 11 C 1.46504 * 119.99827 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47113 * 101.41152 * 11 2 1 13 13 H 1.08993 * 110.00437 * 64.23001 * 12 11 2 14 14 C 1.54313 * 109.77485 * 185.39272 * 12 11 2 15 15 C 1.55163 * 102.86517 * 141.87879 * 14 12 11 16 16 C 1.54910 * 101.58099 * 324.30490 * 15 14 12 17 17 N 1.47024 * 109.87798 * 303.13754 * 12 11 2 18 18 C 1.34770 * 125.65087 * 61.68185 * 17 12 11 19 19 O 1.21287 * 120.00024 * 0.18027 * 18 17 12 20 20 C 1.50698 * 120.00507 * 180.45346 * 18 17 12 21 21 C 1.52998 * 115.55417 * 266.71059 * 20 18 17 22 22 C 1.52998 * 109.47295 * 299.21790 * 21 20 18 23 23 F 1.39901 * 109.47202 * 59.21383 * 21 20 18 24 24 F 1.39893 * 109.47285 * 179.21378 * 21 20 18 25 25 C 1.53005 * 117.50034 * 120.99845 * 20 18 17 26 26 C 1.52999 * 60.00110 * 252.51683 * 25 20 18 27 27 H 1.09002 * 109.46853 * 270.96999 * 1 2 3 28 28 H 1.09002 * 109.47046 * 30.96493 * 1 2 3 29 29 H 1.08990 * 109.47469 * 150.96860 * 1 2 3 30 30 H 0.96994 * 120.00108 * 179.97438 * 6 5 3 31 31 H 1.08997 * 109.47340 * 341.40300 * 11 2 1 32 32 H 1.09009 * 109.47060 * 221.40790 * 11 2 1 33 33 H 1.08998 * 110.92425 * 23.46318 * 14 12 11 34 34 H 1.08994 * 110.74400 * 260.21087 * 14 12 11 35 35 H 1.09001 * 111.00178 * 206.22952 * 15 14 12 36 36 H 1.09001 * 110.99992 * 82.37758 * 15 14 12 37 37 H 1.08998 * 110.36237 * 278.16587 * 16 15 14 38 38 H 1.09001 * 110.36236 * 155.84756 * 16 15 14 39 39 H 1.08999 * 109.46995 * 65.46184 * 22 21 20 40 40 H 1.08990 * 109.47283 * 185.47274 * 22 21 20 41 41 H 1.09007 * 109.46562 * 305.46830 * 22 21 20 42 42 H 1.08998 * 117.49431 * 0.02562 * 25 20 18 43 43 H 1.08994 * 117.49930 * 145.02522 * 25 20 18 44 44 H 1.09004 * 117.49736 * 252.51083 * 26 25 20 45 45 H 1.09000 * 117.52184 * 107.48106 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1446 1.2350 -0.4173 5 6 1.5651 2.3249 0.5363 6 7 0.5102 2.2183 1.3162 7 14 2.2755 4.0091 0.1513 8 1 2.2334 4.2407 -1.3149 9 1 1.4758 5.0531 0.8409 10 1 3.6825 4.0723 0.6222 11 6 2.1975 -1.2688 0.0006 12 6 2.6996 -1.5684 -1.4132 13 1 3.4205 -0.8111 -1.7212 14 6 3.3540 -2.9654 -1.4497 15 6 2.9085 -3.5197 -2.8288 16 6 1.4792 -2.9353 -2.9519 17 7 1.5677 -1.5918 -2.3512 18 6 0.7500 -0.5552 -2.6217 19 8 0.9222 0.5123 -2.0723 20 6 -0.3819 -0.7241 -3.6020 21 6 -0.0668 -0.3344 -5.0476 22 6 0.3149 1.1461 -5.1051 23 9 0.9990 -1.1092 -5.5177 24 9 -1.1932 -0.5570 -5.8468 25 6 -1.8016 -0.4650 -3.0935 26 6 -1.3406 -1.8956 -3.3792 27 1 -0.3633 0.0174 1.0276 28 1 -0.3633 0.8812 -0.5288 29 1 -0.3634 -0.8984 -0.4987 30 1 0.1019 3.0142 1.6912 31 1 1.5356 -2.0703 0.3286 32 1 3.0467 -1.1978 0.6803 33 1 2.9773 -3.5929 -0.6420 34 1 4.4398 -2.8846 -1.3990 35 1 2.8860 -4.6094 -2.8231 36 1 3.5526 -3.1479 -3.6258 37 1 0.7688 -3.5513 -2.4005 38 1 1.1875 -2.8640 -3.9997 39 1 1.2470 1.3023 -4.5620 40 1 0.4447 1.4477 -6.1443 41 1 -0.4754 1.7429 -4.6496 42 1 -1.9166 -0.1719 -2.0500 43 1 -2.5112 -0.0166 -3.7888 44 1 -1.7469 -2.3885 -4.2624 45 1 -1.1522 -2.5444 -2.5237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755199482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:21 Heat of formation + Delta-G solvation = -44.938946 kcal Electronic energy + Delta-G solvation = -30132.959420 eV Core-core repulsion = 26017.580133 eV Total energy + Delta-G solvation = -4115.379287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.96298 -46.95218 -40.00877 -37.56689 -36.03876 -34.80243 -31.29849 -31.19154 -31.00472 -29.10548 -25.73423 -25.18564 -24.87713 -23.18760 -22.46071 -21.75539 -20.69927 -20.09188 -18.38727 -17.45960 -17.22290 -16.45150 -16.17558 -15.99347 -15.61079 -14.77372 -14.69712 -14.01859 -13.83420 -13.74047 -13.49334 -13.33833 -13.21680 -13.04479 -12.85812 -12.74111 -12.39351 -12.32740 -12.00795 -11.92257 -11.54391 -11.44521 -11.30552 -11.12192 -10.98109 -10.88662 -10.59570 -10.53513 -10.45979 -10.32170 -10.16581 -10.09620 -9.66814 -9.63648 -8.91969 -8.13363 -7.83633 -6.25985 -5.45101 -2.86946 3.16344 3.29915 3.53223 3.58118 3.60652 3.63090 3.86241 4.20320 4.48643 4.62506 4.70062 4.75725 4.82157 4.98056 5.04335 5.12515 5.19208 5.48503 5.55175 5.59877 5.63541 5.67578 5.73096 5.79582 5.84736 5.86823 5.91215 5.98731 6.09050 6.10739 6.15246 6.20484 6.26931 6.41763 6.62050 6.81455 6.87656 7.11578 7.58085 7.86704 8.05035 8.24394 8.69407 9.06533 9.50428 10.15276 10.66727 11.61328 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.006787 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.106657 B = 4124.721284 C = 5169.956234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.577 5.577 3 C -0.202 4.202 4 H 0.052 0.948 5 C 0.002 3.998 6 N -0.914 5.914 7 Si 0.894 3.106 8 H -0.288 1.288 9 H -0.295 1.295 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.117 3.883 13 H 0.068 0.932 14 C -0.127 4.127 15 C -0.132 4.132 16 C 0.102 3.898 17 N -0.605 5.605 18 C 0.538 3.462 19 O -0.422 6.422 20 C -0.205 4.205 21 C 0.336 3.664 22 C -0.187 4.187 23 F -0.196 7.196 24 F -0.199 7.199 25 C -0.127 4.127 26 C -0.156 4.156 27 H 0.010 0.990 28 H 0.055 0.945 29 H -0.020 1.020 30 H 0.246 0.754 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 -12.009 -12.037 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.298 5.298 3 C -0.333 4.333 4 H 0.070 0.930 5 C -0.195 4.195 6 N -0.561 5.561 7 Si 0.725 3.275 8 H -0.215 1.215 9 H -0.221 1.221 10 H -0.215 1.215 11 C 0.015 3.985 12 C 0.012 3.988 13 H 0.086 0.914 14 C -0.165 4.165 15 C -0.170 4.170 16 C -0.022 4.022 17 N -0.343 5.343 18 C 0.321 3.679 19 O -0.288 6.288 20 C -0.209 4.209 21 C 0.299 3.701 22 C -0.244 4.244 23 F -0.177 7.177 24 F -0.180 7.180 25 C -0.164 4.164 26 C -0.193 4.193 27 H 0.028 0.972 28 H 0.073 0.927 29 H -0.002 1.002 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.347 -11.155 -11.663 16.195 hybrid contribution 0.299 0.737 -0.518 0.949 sum -1.048 -10.418 -12.180 16.062 Atomic orbital electron populations 1.20788 0.83483 0.95238 0.97029 1.43588 1.01212 1.00051 1.84961 1.18680 0.99149 0.86225 1.29207 0.93001 1.24799 0.98726 0.97829 0.98113 1.70040 1.24682 1.27090 1.34265 0.86503 0.77917 0.85231 0.77840 1.21494 1.22146 1.21547 1.21076 0.95827 0.89398 0.92166 1.22499 0.87754 0.95481 0.93090 0.91390 1.22661 1.00561 0.96291 0.97020 1.22728 0.96228 1.00066 0.97975 1.22241 0.96990 0.84622 0.98368 1.48118 1.31748 1.10454 1.43934 1.18345 0.81844 0.84997 0.82681 1.91200 1.68249 1.24572 1.44793 1.22436 0.94982 1.09089 0.94400 1.20056 0.73202 0.91806 0.85028 1.22685 1.05981 0.91489 1.04275 1.92992 1.57064 1.77817 1.89844 1.92973 1.53185 1.95998 1.75870 1.23074 0.91616 0.97922 1.03831 1.23139 1.00610 0.91543 1.03983 0.97177 0.92663 1.00178 0.94354 0.94415 0.93594 0.90864 0.90735 0.90639 0.91028 0.92509 0.91077 0.88624 0.90474 0.88860 0.86682 0.87574 0.87854 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.52 6.36 59.85 0.38 4.90 16 2 N -0.58 -14.64 1.65 -181.12 -0.30 -14.94 16 3 C -0.20 -5.73 7.58 -15.06 -0.11 -5.84 16 4 H 0.05 1.48 7.88 -52.49 -0.41 1.07 16 5 C 0.00 0.05 5.00 -17.43 -0.09 -0.04 16 6 N -0.91 -27.89 11.14 55.49 0.62 -27.27 16 7 Si 0.89 23.31 29.58 -169.99 -5.03 18.28 16 8 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 9 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 10 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 11 C 0.14 2.98 5.28 -4.04 -0.02 2.96 16 12 C 0.12 2.05 3.23 -66.96 -0.22 1.83 16 13 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -1.60 6.47 -24.90 -0.16 -1.76 16 15 C -0.13 -1.46 7.08 -24.58 -0.17 -1.63 16 16 C 0.10 1.32 5.53 -2.53 -0.01 1.30 16 17 N -0.60 -10.23 3.07 -163.03 -0.50 -10.73 16 18 C 0.54 10.10 4.08 -10.99 -0.04 10.06 16 19 O -0.42 -9.89 9.82 5.55 0.05 -9.83 16 20 C -0.20 -3.14 1.01 -155.66 -0.16 -3.29 16 21 C 0.34 4.89 2.08 -26.73 -0.06 4.84 16 22 C -0.19 -2.66 9.04 37.16 0.34 -2.32 16 23 F -0.20 -2.98 15.56 2.25 0.04 -2.95 16 24 F -0.20 -2.76 15.63 2.25 0.04 -2.73 16 25 C -0.13 -1.79 9.67 -26.73 -0.26 -2.05 16 26 C -0.16 -1.98 8.38 -26.73 -0.22 -2.20 16 27 H 0.01 0.28 7.52 -51.93 -0.39 -0.11 16 28 H 0.05 1.53 6.12 -51.93 -0.32 1.21 16 29 H -0.02 -0.46 6.64 -51.93 -0.35 -0.80 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 31 H 0.04 0.74 7.91 -51.93 -0.41 0.33 16 32 H 0.05 0.96 8.13 -51.92 -0.42 0.54 16 33 H 0.07 0.87 7.80 -51.93 -0.41 0.46 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.68 7.49 -51.93 -0.39 0.30 16 38 H 0.07 0.92 6.12 -51.93 -0.32 0.60 16 39 H 0.09 1.56 7.53 -51.93 -0.39 1.17 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.11 1.84 7.50 -51.93 -0.39 1.45 16 43 H 0.11 1.31 7.80 -51.93 -0.41 0.90 16 44 H 0.10 1.15 7.76 -51.93 -0.40 0.75 16 45 H 0.11 1.34 7.20 -51.93 -0.37 0.96 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -32.72 349.13 -7.68 -40.40 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.05 Total: -2.24 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.81 Total: 6.75 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.18 Total: -52.94 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.05 Total: -9.83 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.07 Total: -5.67 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.03 Total: 18.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.72 -7.68 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755199482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.542 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds