Wall clock time and date at job start Tue Mar 31 2020 11:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.91797 * 2 1 4 4 C 1.54911 * 111.00118 * 236.09871 * 2 1 3 5 5 N 1.47425 * 104.82980 * 204.91548 * 4 2 1 6 6 C 1.36942 * 125.65228 * 204.09388 * 5 4 2 7 7 H 1.08005 * 119.99312 * 0.02562 * 6 5 4 8 8 C 1.38806 * 120.00457 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99876 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47216 * 89.99951 * 10 8 6 12 12 H 1.48504 * 109.47197 * 209.99772 * 10 8 6 13 13 H 1.48497 * 109.47369 * 329.99639 * 10 8 6 14 14 C 1.47019 * 108.70541 * 24.12995 * 5 4 2 15 15 C 1.54326 * 107.26981 * 358.94173 * 14 5 4 16 16 H 1.08998 * 110.72071 * 219.26436 * 15 14 5 17 17 N 1.46498 * 110.72368 * 96.16681 * 15 14 5 18 18 C 1.34777 * 119.99828 * 86.17614 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.53002 * 112.84739 * 48.80549 * 20 18 17 22 22 F 1.39901 * 109.47236 * 309.67027 * 21 20 18 23 23 F 1.39896 * 109.46999 * 69.66795 * 21 20 18 24 24 C 1.53775 * 113.61342 * 277.50398 * 20 18 17 25 25 C 1.53782 * 87.07921 * 220.01478 * 24 20 18 26 26 C 1.53775 * 113.61619 * 180.02562 * 20 18 17 27 27 H 1.08994 * 109.47019 * 296.09608 * 1 2 3 28 28 H 1.09000 * 109.46849 * 56.09512 * 1 2 3 29 29 H 1.08997 * 109.47090 * 176.09334 * 1 2 3 30 30 H 1.08992 * 109.47288 * 183.90037 * 3 2 1 31 31 H 1.08997 * 109.47203 * 303.90764 * 3 2 1 32 32 H 1.09006 * 109.46969 * 63.89967 * 3 2 1 33 33 H 1.08998 * 110.36337 * 86.08267 * 4 2 1 34 34 H 1.08996 * 110.46599 * 323.80120 * 4 2 1 35 35 H 0.96999 * 120.00071 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.88539 * 239.52057 * 14 5 4 37 37 H 1.09002 * 109.88449 * 118.35689 * 14 5 4 38 38 H 0.97001 * 120.00384 * 266.46060 * 17 15 14 39 39 H 1.08993 * 109.46977 * 189.67319 * 21 20 18 40 40 H 1.09005 * 113.61767 * 334.56112 * 24 20 18 41 41 H 1.09001 * 113.62079 * 105.46729 * 24 20 18 42 42 H 1.09001 * 113.61540 * 270.87753 * 25 24 20 43 43 H 1.09003 * 113.69003 * 139.99241 * 25 24 20 44 44 H 1.09004 * 113.61204 * 254.52669 * 26 20 18 45 45 H 1.08998 * 113.61398 * 25.34787 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4641 -1.5667 -1.6072 7 1 4.3333 -1.5117 -2.6779 8 6 5.6831 -1.9654 -1.0764 9 7 5.8422 -2.0329 0.2284 10 14 7.0977 -2.4062 -2.2139 11 1 7.9012 -1.1902 -2.4987 12 1 7.9578 -3.4263 -1.5620 13 1 6.5589 -2.9524 -3.4853 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 2.1920 -0.1726 2.0815 17 7 1.2268 -1.9575 1.4961 18 6 1.2847 -2.5504 2.7050 19 8 2.0445 -2.1293 3.5513 20 6 0.4052 -3.7368 3.0054 21 6 0.4571 -4.8066 1.9128 22 9 0.2454 -4.2098 0.6653 23 9 1.7112 -5.4264 1.9263 24 6 -1.0230 -3.3536 3.4274 25 6 -0.9355 -4.4850 4.4653 26 6 0.5899 -4.2967 4.4256 27 1 -0.3633 0.4520 0.9229 28 1 -0.3633 0.5733 -0.8529 29 1 -0.3633 -1.0253 -0.0700 30 1 3.1636 1.4025 -0.0699 31 1 1.6705 1.9732 -0.8529 32 1 1.7837 1.9299 0.9229 33 1 2.1560 -0.1719 -2.0836 34 1 1.4525 -1.6704 -1.4044 35 1 6.6942 -2.3112 0.5993 36 1 4.2426 -0.5999 1.0599 37 1 3.6651 -2.2894 1.0400 38 1 0.6191 -2.2944 0.8193 39 1 -0.3180 -5.5507 2.0957 40 1 -1.0959 -2.3600 3.8697 41 1 -1.7693 -3.5288 2.6525 42 1 -1.2665 -5.4518 4.0862 43 1 -1.3815 -4.2323 5.4273 44 1 1.1462 -5.2336 4.4566 45 1 0.9592 -3.5613 5.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755413868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:54 Heat of formation + Delta-G solvation = -90.434137 kcal Electronic energy + Delta-G solvation = -29224.869223 eV Core-core repulsion = 25107.517117 eV Total energy + Delta-G solvation = -4117.352106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.01989 -46.99277 -40.36532 -38.82144 -37.08403 -33.80531 -32.93137 -30.63491 -29.01475 -27.78191 -26.71732 -25.93513 -25.56973 -24.70121 -23.23796 -21.10004 -19.92612 -19.50342 -18.60408 -17.79776 -17.14949 -16.97288 -16.56576 -16.09995 -15.70163 -14.90102 -14.68249 -14.37920 -14.00403 -13.85525 -13.82831 -13.68956 -13.32064 -13.19686 -12.73158 -12.67970 -12.51494 -12.32500 -11.96292 -11.90325 -11.78670 -11.64226 -11.38180 -11.28914 -11.02051 -10.92810 -10.72830 -10.69569 -10.58119 -10.33199 -10.18392 -9.93049 -9.81313 -9.57959 -9.36848 -8.55653 -8.36926 -6.74263 -5.61009 -2.95682 2.82649 3.42672 3.45549 3.49928 3.52690 3.62940 3.96118 4.10466 4.20965 4.43948 4.56643 4.68667 4.83257 4.98834 5.05919 5.23642 5.32365 5.35798 5.41789 5.51812 5.59256 5.60848 5.69630 5.71312 5.83294 5.85929 5.95455 6.07309 6.09505 6.19697 6.23881 6.29007 6.43859 6.62987 6.68558 6.73343 6.81353 7.01765 7.62449 7.72516 7.90506 8.01326 8.33918 8.63088 9.29924 9.90860 10.56664 11.49665 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.005254 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.817999 B = 5328.049942 C = 6286.388721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.177 3.823 15 C 0.122 3.878 16 H 0.085 0.915 17 N -0.703 5.703 18 C 0.528 3.472 19 O -0.532 6.532 20 C -0.173 4.173 21 C 0.291 3.709 22 F -0.195 7.195 23 F -0.190 7.190 24 C -0.110 4.110 25 C -0.145 4.145 26 C -0.103 4.103 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.016 0.984 35 H 0.252 0.748 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.400 0.600 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.268 -2.571 6.298 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.328 5.328 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.052 3.948 15 C 0.017 3.983 16 H 0.103 0.897 17 N -0.357 5.357 18 C 0.312 3.688 19 O -0.408 6.408 20 C -0.178 4.178 21 C 0.237 3.763 22 F -0.177 7.177 23 F -0.171 7.171 24 C -0.147 4.147 25 C -0.182 4.182 26 C -0.140 4.140 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.239 0.761 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.453 -2.342 6.865 18.901 hybrid contribution 0.737 -0.504 -1.124 1.435 sum -16.716 -2.846 5.741 17.902 Atomic orbital electron populations 1.21678 0.94840 1.01064 1.01290 1.21997 0.94382 0.96024 0.96663 1.21590 1.02546 0.93677 1.00442 1.21624 0.87877 0.94531 0.94216 1.44415 1.07591 1.78957 1.01816 1.19013 0.89356 1.38475 0.88867 0.90528 1.24803 0.97828 1.01806 0.95921 1.69970 1.24098 1.53284 1.09144 0.86151 0.82489 0.77769 0.79527 1.21672 1.21761 1.20787 1.21495 0.89530 1.00463 0.83355 1.22491 0.92626 0.86260 0.96872 0.89679 1.46318 1.42481 1.32668 1.14272 1.19661 0.82762 0.83637 0.82770 1.90694 1.38654 1.64515 1.46955 1.23375 1.00220 0.96026 0.98136 1.21458 0.84040 0.91072 0.79756 1.92885 1.94923 1.84805 1.45041 1.93062 1.44460 1.83241 1.96373 1.22843 0.92092 1.00662 0.99152 1.22953 0.96666 0.98556 1.00056 1.22783 0.96355 1.02257 0.92638 0.92897 0.92590 0.93093 0.91171 0.92884 0.93399 0.94156 0.96691 0.93747 0.92948 0.93403 0.76063 0.86450 0.88384 0.90082 0.89749 0.90182 0.90176 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.22 37.16 0.31 -1.46 16 2 C -0.09 -1.55 0.83 -152.36 -0.13 -1.67 16 3 C -0.12 -2.05 8.57 37.16 0.32 -1.73 16 4 C 0.14 3.00 6.14 -2.53 -0.02 2.98 16 5 N -0.60 -15.65 3.38 -170.07 -0.57 -16.23 16 6 C -0.23 -6.54 10.28 -15.06 -0.15 -6.70 16 7 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -28.34 10.31 55.49 0.57 -27.77 16 10 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.18 4.57 4.79 -3.06 -0.01 4.55 16 15 C 0.12 2.46 2.51 -66.10 -0.17 2.29 16 16 H 0.09 1.75 7.61 -51.93 -0.40 1.35 16 17 N -0.70 -12.62 4.29 -52.03 -0.22 -12.84 16 18 C 0.53 9.44 6.90 -10.98 -0.08 9.36 16 19 O -0.53 -11.46 15.63 5.55 0.09 -11.38 16 20 C -0.17 -2.22 0.92 -154.85 -0.14 -2.36 16 21 C 0.29 3.68 4.57 37.16 0.17 3.85 16 22 F -0.20 -2.82 14.50 2.25 0.03 -2.79 16 23 F -0.19 -3.17 17.06 2.25 0.04 -3.13 16 24 C -0.11 -0.97 7.20 -25.92 -0.19 -1.16 16 25 C -0.14 -1.07 7.73 -25.94 -0.20 -1.27 16 26 C -0.10 -1.14 6.93 -25.94 -0.18 -1.32 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.66 6.38 -51.93 -0.33 0.33 16 30 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.02 0.32 7.99 -51.93 -0.41 -0.09 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.05 1.51 7.38 -51.93 -0.38 1.13 16 37 H 0.05 1.44 7.41 -51.93 -0.38 1.05 16 38 H 0.40 6.59 4.38 -40.82 -0.18 6.41 16 39 H 0.12 0.93 7.34 -51.93 -0.38 0.54 16 40 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 41 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.08 0.47 7.64 -51.93 -0.40 0.08 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 45 H 0.11 1.35 7.43 -51.93 -0.39 0.97 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -34.54 357.62 -7.26 -41.80 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.99 Total: 4.01 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.56 Total: 5.05 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.23 Total: -56.84 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.54 -7.26 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755413868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.639 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds