Wall clock time and date at job start Tue Mar 31 2020 11:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 110.88409 * 2 1 4 4 C 1.55130 * 111.19649 * 236.06620 * 2 1 3 5 5 N 1.47417 * 104.71869 * 279.19295 * 4 2 1 6 6 C 1.36943 * 125.64758 * 155.82057 * 5 4 2 7 7 H 1.07997 * 119.99801 * 4.91780 * 6 5 4 8 8 C 1.38809 * 119.99930 * 184.92067 * 6 5 4 9 9 N 1.31620 * 120.00198 * 352.94035 * 8 6 5 10 10 Si 1.86799 * 120.00043 * 172.66819 * 8 6 5 11 11 H 1.48499 * 109.47359 * 94.98551 * 10 8 6 12 12 H 1.48498 * 109.47250 * 214.98925 * 10 8 6 13 13 H 1.48501 * 109.46948 * 334.98580 * 10 8 6 14 14 C 1.47017 * 108.70515 * 335.55094 * 5 4 2 15 15 C 1.54323 * 107.27059 * 1.29004 * 14 5 4 16 16 H 1.08997 * 110.71914 * 140.56005 * 15 14 5 17 17 N 1.46506 * 110.72272 * 263.65024 * 15 14 5 18 18 C 1.34782 * 120.00098 * 273.55246 * 17 15 14 19 19 O 1.21278 * 119.99931 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99772 * 179.97438 * 18 17 15 21 21 C 1.53007 * 112.85098 * 48.79885 * 20 18 17 22 22 F 1.39901 * 109.46866 * 69.66760 * 21 20 18 23 23 F 1.39896 * 109.47255 * 189.66486 * 21 20 18 24 24 C 1.53785 * 113.61447 * 277.49569 * 20 18 17 25 25 C 1.53780 * 87.07709 * 220.02111 * 24 20 18 26 26 C 1.53778 * 87.08572 * 25.42947 * 25 24 20 27 27 H 1.08998 * 109.47289 * 296.12244 * 1 2 3 28 28 H 1.09003 * 109.47260 * 56.12533 * 1 2 3 29 29 H 1.08997 * 109.46693 * 176.11745 * 1 2 3 30 30 H 1.08992 * 109.47143 * 183.88183 * 3 2 1 31 31 H 1.09007 * 109.46862 * 303.87665 * 3 2 1 32 32 H 1.08995 * 109.47026 * 63.87339 * 3 2 1 33 33 H 1.09000 * 110.49872 * 160.34800 * 4 2 1 34 34 H 1.09001 * 110.34165 * 37.95378 * 4 2 1 35 35 H 0.97003 * 119.99739 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.88761 * 120.71020 * 14 5 4 37 37 H 1.09007 * 109.88311 * 241.72012 * 14 5 4 38 38 H 0.96999 * 119.99766 * 93.53749 * 17 15 14 39 39 H 1.08995 * 109.47055 * 309.66725 * 21 20 18 40 40 H 1.08997 * 113.61155 * 334.56612 * 24 20 18 41 41 H 1.08994 * 113.61647 * 105.46935 * 24 20 18 42 42 H 1.09000 * 113.61375 * 270.87868 * 25 24 20 43 43 H 1.09000 * 113.69327 * 139.99312 * 25 24 20 44 44 H 1.09002 * 113.61822 * 220.01977 * 26 25 24 45 45 H 1.08998 * 113.61261 * 89.11453 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0909 -0.8074 -1.2000 5 7 2.0140 -2.2161 -0.7724 6 6 1.9462 -3.3006 -1.6058 7 1 2.0264 -3.1662 -2.6744 8 6 1.7745 -4.5725 -1.0771 9 7 1.8159 -4.7548 0.2258 10 14 1.4771 -6.0243 -2.2143 11 1 2.7672 -6.7022 -2.4995 12 1 0.5483 -6.9820 -1.5619 13 1 0.8792 -5.5430 -3.4855 14 6 2.0285 -2.2642 0.6969 15 6 2.0861 -0.8073 1.2025 16 1 1.4523 -0.6783 2.0799 17 7 3.4662 -0.4161 1.5005 18 6 3.9937 -0.6768 2.7131 19 8 3.3258 -1.2348 3.5577 20 6 5.4135 -0.2749 3.0192 21 6 5.7166 1.1748 2.6352 22 9 5.0304 2.0384 3.4958 23 9 7.0921 1.4074 2.7406 24 6 6.4612 -1.2802 2.5127 25 6 7.2183 -1.0342 3.8284 26 6 5.8642 -0.6421 4.4429 27 1 -0.3634 0.4525 0.9227 28 1 -0.3634 0.5728 -0.8532 29 1 -0.3632 -1.0253 -0.0696 30 1 3.1629 1.4035 -0.0696 31 1 1.6697 1.9732 -0.8533 32 1 1.7822 1.9303 0.9226 33 1 3.1254 -0.5271 -1.3985 34 1 1.4766 -0.6457 -2.0858 35 1 1.6955 -5.6436 0.5952 36 1 1.1220 -2.7474 1.0611 37 1 2.9050 -2.8134 1.0412 38 1 4.0003 0.0303 0.8250 39 1 5.3954 1.3536 1.6091 40 1 6.0788 -2.2960 2.4123 41 1 7.0005 -0.9406 1.6285 42 1 7.9290 -0.2094 3.7755 43 1 7.6492 -1.9370 4.2612 44 1 5.9216 0.2126 5.1169 45 1 5.3187 -1.4835 4.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755413869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:57 Heat of formation + Delta-G solvation = -91.988594 kcal Electronic energy + Delta-G solvation = -28825.329631 eV Core-core repulsion = 24707.910119 eV Total energy + Delta-G solvation = -4117.419513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.23028 -47.17439 -40.40851 -38.76333 -37.03600 -33.96752 -33.10565 -30.75201 -29.37839 -27.80571 -26.78094 -25.83675 -25.66794 -24.48129 -23.30059 -21.11322 -20.09158 -19.44975 -18.94927 -17.92161 -17.43198 -17.07289 -16.70937 -15.94754 -15.74736 -14.89354 -14.73154 -14.42381 -14.12699 -13.96824 -13.91151 -13.78421 -13.48029 -13.33254 -12.94891 -12.62061 -12.50053 -12.23329 -12.04450 -12.00128 -11.91673 -11.69940 -11.46964 -11.21978 -11.10824 -11.02083 -10.79550 -10.58239 -10.43237 -10.38362 -10.30347 -10.03639 -9.92341 -9.69609 -9.47784 -8.63720 -8.53596 -6.85440 -5.72860 -3.06512 2.72518 3.30900 3.38424 3.44291 3.46426 3.47855 3.87716 4.10457 4.21400 4.47994 4.62151 4.70812 4.78701 4.89666 4.99226 5.21814 5.24256 5.31676 5.50479 5.59274 5.59903 5.68053 5.74917 5.82127 5.86410 5.87026 5.92775 5.97383 6.12904 6.14133 6.19385 6.28147 6.34213 6.53724 6.56188 6.63491 6.66087 6.90139 7.53144 7.58103 7.75326 7.84898 8.22934 8.46510 9.19212 9.80266 10.45744 11.38092 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.004581 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.803670 B = 6110.556137 C = 7125.838480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.176 3.824 15 C 0.124 3.876 16 H 0.088 0.912 17 N -0.708 5.708 18 C 0.534 3.466 19 O -0.523 6.523 20 C -0.173 4.173 21 C 0.293 3.707 22 F -0.196 7.196 23 F -0.195 7.195 24 C -0.108 4.108 25 C -0.147 4.147 26 C -0.105 4.105 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.042 0.958 35 H 0.253 0.747 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.392 0.608 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 13.579 3.886 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.328 5.328 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.563 5.563 10 Si 0.739 3.261 11 H -0.218 1.218 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.019 3.981 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.318 3.682 19 O -0.398 6.398 20 C -0.177 4.177 21 C 0.239 3.761 22 F -0.177 7.177 23 F -0.176 7.176 24 C -0.145 4.145 25 C -0.185 4.185 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.226 0.774 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.228 12.948 4.540 15.509 hybrid contribution 0.160 -0.557 -0.927 1.093 sum 7.387 12.391 3.614 14.872 Atomic orbital electron populations 1.21588 0.93125 1.03024 1.00572 1.22048 0.96488 0.93995 0.96511 1.21694 0.99888 0.95762 1.01623 1.21672 0.96423 0.85793 0.94374 1.44435 1.86953 0.99677 1.01768 1.19003 1.43306 0.84568 0.89075 0.90498 1.24818 1.01965 0.97462 0.95924 1.69975 1.55573 1.21299 1.09462 0.86166 0.77699 0.82638 0.79640 1.21768 1.21645 1.20654 1.21516 1.01652 0.88411 0.83420 1.22516 0.80716 0.97751 0.97112 0.89424 1.46063 1.15281 1.60589 1.13926 1.19569 0.86681 0.79453 0.82455 1.90714 1.60663 1.41483 1.46947 1.23333 0.95846 0.94934 1.03601 1.21309 0.73893 0.86937 0.93985 1.93010 1.79348 1.71808 1.73519 1.92950 1.32314 1.95146 1.97217 1.22824 0.94250 0.98825 0.98631 1.23074 0.96806 1.02617 0.95973 1.22790 0.96025 1.02939 0.92465 0.93297 0.92820 0.91129 0.93440 0.92431 0.92677 0.96823 0.93973 0.93681 0.92664 0.93571 0.77352 0.87078 0.88031 0.90074 0.88823 0.90594 0.90658 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.58 37.16 0.32 -1.63 16 2 C -0.09 -1.41 0.84 -152.24 -0.13 -1.54 16 3 C -0.13 -1.61 8.22 37.16 0.31 -1.30 16 4 C 0.14 2.73 6.15 -2.41 -0.01 2.72 16 5 N -0.60 -14.55 3.38 -169.94 -0.57 -15.12 16 6 C -0.23 -6.25 10.26 -15.06 -0.15 -6.40 16 7 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 8 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 9 N -0.92 -26.86 10.36 55.49 0.57 -26.28 16 10 Si 0.91 21.88 29.56 -169.99 -5.02 16.85 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.18 4.19 4.80 -3.07 -0.01 4.17 16 15 C 0.12 2.27 2.50 -66.10 -0.17 2.11 16 16 H 0.09 1.70 7.60 -51.93 -0.39 1.30 16 17 N -0.71 -11.15 4.46 -52.03 -0.23 -11.38 16 18 C 0.53 8.84 6.90 -10.98 -0.08 8.77 16 19 O -0.52 -10.76 15.62 5.56 0.09 -10.68 16 20 C -0.17 -2.21 1.03 -154.84 -0.16 -2.37 16 21 C 0.29 3.21 4.69 37.16 0.17 3.38 16 22 F -0.20 -2.49 17.06 2.25 0.04 -2.46 16 23 F -0.20 -2.11 14.55 2.25 0.03 -2.08 16 24 C -0.11 -1.26 6.96 -25.92 -0.18 -1.44 16 25 C -0.15 -1.54 7.56 -25.92 -0.20 -1.74 16 26 C -0.10 -1.30 6.90 -25.92 -0.18 -1.48 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 30 H 0.05 0.52 6.39 -51.93 -0.33 0.18 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.01 0.26 7.99 -51.93 -0.41 -0.16 16 34 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 1.51 7.29 -51.93 -0.38 1.13 16 37 H 0.05 1.27 7.51 -51.92 -0.39 0.88 16 38 H 0.39 5.18 5.82 -40.82 -0.24 4.94 16 39 H 0.11 0.94 7.04 -51.93 -0.37 0.58 16 40 H 0.10 1.37 8.09 -51.93 -0.42 0.95 16 41 H 0.08 0.82 8.06 -51.93 -0.42 0.41 16 42 H 0.09 0.91 6.44 -51.93 -0.33 0.58 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 45 H 0.11 1.47 7.43 -51.93 -0.39 1.09 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -31.51 357.62 -7.25 -38.76 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.97 Total: 3.99 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.56 Total: 3.01 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.23 Total: -52.79 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.51 -7.25 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755413869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.229 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds