Wall clock time and date at job start Tue Mar 31 2020 11:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33719 * 126.06935 * 2 1 4 4 C 1.30605 * 109.61436 * 180.02562 * 3 2 1 5 5 N 1.35116 * 109.03365 * 359.75204 * 4 3 2 6 6 H 0.97004 * 126.46562 * 180.26637 * 5 4 3 7 7 C 1.36350 * 126.06342 * 180.02562 * 2 1 3 8 8 C 1.47276 * 126.79094 * 359.95192 * 7 2 1 9 9 N 1.31451 * 126.50119 * 5.51560 * 8 7 2 10 10 N 1.28508 * 109.93104 * 179.75165 * 9 8 7 11 11 C 1.31298 * 110.14757 * 0.40786 * 10 9 8 12 12 N 1.38481 * 126.35931 * 179.85773 * 11 10 9 13 13 C 1.46834 * 110.98653 * 123.90416 * 12 11 10 14 14 C 1.53029 * 109.51837 * 174.15743 * 13 12 11 15 15 C 1.53115 * 109.28031 * 59.18089 * 14 13 12 16 16 C 1.53114 * 109.16148 * 302.34651 * 15 14 13 17 17 H 1.09004 * 109.50440 * 297.70772 * 16 15 14 18 18 C 1.50703 * 109.54023 * 177.61522 * 16 15 14 19 19 H 1.07999 * 120.00177 * 240.18015 * 18 16 15 20 20 C 1.37878 * 119.99797 * 60.16895 * 18 16 15 21 21 N 1.31507 * 120.00366 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99681 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47378 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46897 * 120.00349 * 22 20 18 25 25 H 1.48495 * 109.47584 * 240.00090 * 22 20 18 26 26 C 1.46851 * 111.00185 * 359.69515 * 12 11 10 27 27 N 1.36616 * 107.28497 * 359.59847 * 11 10 9 28 28 C 1.46498 * 127.18199 * 180.21749 * 27 11 10 29 29 H 1.09001 * 109.46929 * 269.97129 * 1 2 3 30 30 H 1.09005 * 109.46881 * 29.97164 * 1 2 3 31 31 H 1.09000 * 109.46925 * 149.97274 * 1 2 3 32 32 H 1.07996 * 125.48325 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46174 * 54.14386 * 13 12 11 34 34 H 1.09003 * 109.46352 * 294.17310 * 13 12 11 35 35 H 1.08999 * 109.50529 * 299.24177 * 14 13 12 36 36 H 1.08999 * 109.50116 * 179.12363 * 14 13 12 37 37 H 1.09003 * 109.52662 * 182.44072 * 15 14 13 38 38 H 1.09006 * 109.57559 * 62.28341 * 15 14 13 39 39 H 0.96996 * 120.00529 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.46121 * 65.81533 * 26 12 11 41 41 H 1.09001 * 109.45517 * 305.84286 * 26 12 11 42 42 H 1.08993 * 109.47373 * 95.73377 * 28 27 11 43 43 H 1.09004 * 109.47443 * 215.73602 * 28 27 11 44 44 H 1.09002 * 109.47220 * 335.73497 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2944 1.0809 0.0000 4 6 3.5469 0.7109 -0.0006 5 7 3.6077 -0.6389 0.0046 6 1 4.4130 -1.1797 0.0091 7 6 2.3097 -1.1022 -0.0005 8 6 1.8756 -2.5095 -0.0001 9 7 0.6400 -2.9466 -0.1008 10 7 0.6259 -4.2313 -0.0708 11 6 1.8478 -4.6940 0.0595 12 7 2.2178 -6.0265 0.1309 13 6 3.2007 -6.3558 -0.9090 14 6 3.6941 -7.7907 -0.7102 15 6 2.5030 -8.7499 -0.7854 16 6 1.4722 -8.3553 0.2758 17 1 1.9148 -8.4529 1.2672 18 6 0.2699 -9.2577 0.1708 19 1 -0.7034 -8.8385 -0.0375 20 6 0.4124 -10.6186 0.3403 21 7 1.5975 -11.1291 0.5942 22 14 -1.0778 -11.7373 0.2094 23 1 -2.2846 -10.9222 -0.0814 24 1 -0.8667 -12.7167 -0.8867 25 1 -1.2668 -12.4623 1.4914 26 6 1.0432 -6.9040 0.0485 27 7 2.6869 -3.6169 0.1056 28 6 4.1456 -3.6361 0.2400 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 4.3972 1.3767 -0.0011 33 1 4.0445 -5.6690 -0.8418 34 1 2.7355 -6.2644 -1.8905 35 1 4.1717 -7.8794 0.2656 36 1 4.4121 -8.0401 -1.4914 37 1 2.8436 -9.7688 -0.6012 38 1 2.0485 -8.6910 -1.7744 39 1 1.6978 -12.0864 0.7139 40 1 0.5881 -6.8100 -0.9375 41 1 0.3200 -6.6153 0.8113 42 1 4.6024 -3.5675 -0.7471 43 1 4.4657 -2.7900 0.8481 44 1 4.4541 -4.5652 0.7193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772171817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:54 Heat of formation + Delta-G solvation = 146.007492 kcal Electronic energy + Delta-G solvation = -26612.823949 eV Core-core repulsion = 22988.706658 eV Total energy + Delta-G solvation = -3624.117290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96846 -42.09541 -38.53816 -35.28964 -34.03741 -33.33273 -32.40232 -31.53653 -30.09807 -28.87206 -27.93247 -26.71240 -25.16644 -23.92853 -23.02829 -22.08754 -21.46319 -20.89599 -19.77623 -18.85242 -18.30021 -17.27023 -16.52570 -16.33222 -15.65126 -15.33853 -15.24218 -14.67481 -14.54664 -14.32307 -14.11321 -13.55002 -13.13157 -13.09240 -12.89501 -12.78779 -12.68806 -12.56998 -12.23906 -11.96581 -11.34694 -11.02105 -10.91904 -10.74757 -10.60929 -10.43329 -10.34923 -10.32468 -10.24246 -10.01492 -9.91774 -9.61644 -9.32858 -8.87630 -8.68468 -8.37041 -7.65783 -6.05819 -4.11330 1.00322 2.09174 2.18258 2.52221 2.75939 3.15595 3.28195 3.36659 3.41964 3.87477 4.05983 4.20499 4.33286 4.42037 4.61929 4.73184 4.90633 5.03582 5.07249 5.10370 5.25414 5.34958 5.42746 5.62328 5.74584 5.81157 5.84764 5.92938 5.99220 6.08770 6.21496 6.24551 6.36503 6.42350 6.53944 6.62702 6.76870 6.89592 6.91977 7.13039 7.25038 7.49840 7.67243 7.70234 7.90559 8.02494 8.34907 8.84190 8.92415 9.53871 11.00818 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027369 B = 0.002997 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.819132 B = 9340.313743 C =10204.640629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.069 3.931 3 N -0.489 5.489 4 C 0.205 3.795 5 N -0.572 5.572 6 H 0.417 0.583 7 C 0.044 3.956 8 C 0.226 3.774 9 N -0.248 5.248 10 N -0.316 5.316 11 C 0.390 3.610 12 N -0.450 5.450 13 C 0.058 3.942 14 C -0.116 4.116 15 C -0.116 4.116 16 C 0.054 3.946 17 H 0.037 0.963 18 C -0.513 4.513 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.082 3.918 27 N -0.495 5.495 28 C 0.072 3.928 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.215 0.785 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.036 0.964 39 H 0.260 0.740 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.609 18.445 -2.148 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 N -0.209 5.209 4 C -0.079 4.079 5 N -0.179 5.179 6 H 0.257 0.743 7 C -0.072 4.072 8 C -0.039 4.039 9 N -0.089 5.089 10 N -0.161 5.161 11 C 0.035 3.965 12 N -0.174 5.174 13 C -0.068 4.068 14 C -0.154 4.154 15 C -0.154 4.154 16 C 0.035 3.965 17 H 0.055 0.945 18 C -0.551 4.551 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.043 4.043 27 N -0.192 5.192 28 C -0.071 4.071 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.114 18.927 -1.807 21.084 hybrid contribution 1.487 -1.647 -0.465 2.267 sum 10.600 17.280 -2.273 20.399 Atomic orbital electron populations 1.20260 0.86335 1.03797 1.03008 1.20922 0.96927 0.86072 1.02453 1.70149 1.00444 1.30271 1.20022 1.25066 0.97508 0.81345 1.03931 1.43439 1.07443 1.08975 1.58056 0.74341 1.17596 0.84247 0.89068 1.16283 1.21127 0.87802 0.85264 1.09700 1.74337 1.14778 1.03465 1.16363 1.74786 1.16041 1.01845 1.23449 1.23081 0.86188 0.88094 0.99156 1.58854 1.17367 0.95603 1.45539 1.22356 0.93433 0.99361 0.91678 1.21720 0.99792 0.92570 1.01351 1.21740 0.94145 1.00602 0.98866 1.18757 0.94858 0.87017 0.95826 0.94531 1.21116 0.93890 0.91499 1.48641 0.92275 1.24914 0.95877 0.98099 0.94868 1.69875 1.21924 1.12291 1.48793 0.86519 0.83179 0.80637 0.77614 1.19612 1.21076 1.21006 1.22481 0.87362 0.93240 1.01213 1.46100 1.08396 1.05875 1.58861 1.22168 0.76524 1.05428 1.03026 0.90940 0.91177 0.88968 0.76876 0.91988 0.93883 0.91627 0.92425 0.88467 0.94525 0.93021 0.93810 0.90320 0.90238 0.90520 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.05 36.01 0.36 -0.56 16 2 C 0.07 0.90 7.14 -82.45 -0.59 0.31 16 3 N -0.49 -5.79 11.21 -10.54 -0.12 -5.91 16 4 C 0.21 1.63 13.03 -90.22 -1.18 0.46 16 5 N -0.57 -4.66 5.86 -10.70 -0.06 -4.72 16 6 H 0.42 2.05 6.46 -40.82 -0.26 1.78 16 7 C 0.04 0.54 7.03 -82.18 -0.58 -0.04 16 8 C 0.23 3.37 7.87 -153.75 -1.21 2.16 16 9 N -0.25 -4.44 10.35 32.51 0.34 -4.11 16 10 N -0.32 -6.21 11.22 30.34 0.34 -5.87 16 11 C 0.39 6.84 7.21 -318.69 -2.30 4.54 16 12 N -0.45 -8.10 4.66 -174.52 -0.81 -8.92 16 13 C 0.06 0.90 5.21 -3.84 -0.02 0.88 16 14 C -0.12 -1.96 6.09 -26.66 -0.16 -2.12 16 15 C -0.12 -2.51 5.03 -26.61 -0.13 -2.64 16 16 C 0.05 1.29 2.26 -91.69 -0.21 1.09 16 17 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 18 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -24.39 11.36 55.43 0.63 -23.76 16 22 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.08 1.74 4.10 -3.83 -0.02 1.73 16 27 N -0.49 -6.83 3.24 -122.14 -0.40 -7.23 16 28 C 0.07 0.60 8.53 59.85 0.51 1.11 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.22 6.54 -51.93 -0.34 0.89 16 32 H 0.21 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.06 0.75 5.21 -51.93 -0.27 0.48 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 2.38 6.17 -51.93 -0.32 2.06 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.77 7.92 -51.93 -0.41 1.36 16 42 H 0.08 0.49 7.99 -51.93 -0.41 0.07 16 43 H 0.08 0.44 6.30 -51.93 -0.33 0.12 16 44 H 0.11 0.92 7.24 -51.93 -0.38 0.55 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -32.61 349.24 -11.82 -44.43 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.07 Total: 0.35 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -5.91 Total: -5.41 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.08 Total: -60.52 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.61 -11.82 -44.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772171817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.435 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds