Wall clock time and date at job start Tue Mar 31 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38112 * 120.03471 * 2 1 4 4 C 1.38286 * 120.06941 * 180.27334 * 3 2 1 5 5 C 1.38284 * 120.15435 * 359.74331 * 4 3 2 6 6 C 1.38102 * 120.07021 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.03322 * 179.97438 * 6 5 4 8 8 C 1.38909 * 120.03837 * 179.75713 * 2 1 3 9 9 N 1.39672 * 120.07437 * 0.02562 * 8 2 1 10 10 C 1.46896 * 110.99890 * 299.71387 * 9 8 2 11 11 C 1.50699 * 109.47110 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00127 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99892 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63255 * 0.02562 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 18 18 H 1.08994 * 109.50232 * 301.42239 * 17 16 15 19 19 C 1.50707 * 109.50154 * 181.32368 * 17 16 15 20 20 H 1.08007 * 119.99368 * 0.16385 * 19 17 16 21 21 C 1.37876 * 120.00294 * 180.16159 * 19 17 16 22 22 N 1.31506 * 119.99888 * 179.97438 * 21 19 17 23 23 Si 1.86801 * 119.99900 * 0.02562 * 21 19 17 24 24 H 1.48496 * 109.47253 * 89.99726 * 23 21 19 25 25 H 1.48498 * 109.46922 * 210.00093 * 23 21 19 26 26 H 1.48502 * 109.47014 * 329.99809 * 23 21 19 27 27 C 1.46933 * 120.62741 * 180.02562 * 13 11 10 28 28 H 1.09001 * 109.47177 * 270.23949 * 1 2 3 29 29 H 1.09001 * 109.47067 * 30.23639 * 1 2 3 30 30 H 1.08996 * 109.46734 * 150.24064 * 1 2 3 31 31 H 1.08000 * 119.96375 * 0.02562 * 3 2 1 32 32 H 1.08008 * 119.92259 * 179.71810 * 4 3 2 33 33 H 1.07997 * 119.96263 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46682 * 270.02102 * 7 6 5 35 35 H 1.08994 * 109.47663 * 30.01880 * 7 6 5 36 36 H 1.08996 * 109.46977 * 150.02356 * 7 6 5 37 37 H 1.00905 * 110.99884 * 175.76380 * 9 8 2 38 38 H 1.09004 * 109.46758 * 60.00583 * 10 9 8 39 39 H 1.08995 * 109.47414 * 300.00776 * 10 9 8 40 40 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 41 41 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 42 42 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 43 43 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 44 44 H 1.08999 * 109.41979 * 178.67448 * 16 15 14 45 45 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 46 46 H 0.96998 * 119.99910 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.58580 * 353.38021 * 27 13 11 48 48 H 1.09006 * 109.57831 * 113.65514 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0057 5 6 4.2765 0.0012 -0.0061 6 6 3.5914 -1.1979 -0.0002 7 6 4.3501 -2.5000 -0.0012 8 6 2.2023 -1.2025 0.0051 9 7 1.5064 -2.4135 0.0097 10 6 0.6542 -2.5264 1.2009 11 6 -0.0796 -3.8423 1.1707 12 8 0.0908 -4.6106 0.2479 13 7 -0.9254 -4.1652 2.1691 14 6 -1.1427 -3.2447 3.2934 15 6 -2.6458 -2.9890 3.4416 16 6 -3.3738 -4.3320 3.5753 17 6 -3.1453 -5.1678 2.3139 18 1 -3.5088 -4.6207 1.4441 19 6 -3.8883 -6.4735 2.4342 20 1 -4.4680 -6.6852 3.3205 21 6 -3.8279 -7.3977 1.4128 22 7 -4.4758 -8.5372 1.5180 23 14 -2.8247 -7.0317 -0.1199 24 1 -1.4351 -7.5198 0.0699 25 1 -3.4354 -7.7177 -1.2867 26 1 -2.8061 -5.5665 -0.3611 27 6 -1.6476 -5.4447 2.1539 28 1 -0.3633 0.0043 1.0277 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3632 -0.8921 -0.5101 31 1 1.6583 2.1310 0.0004 32 1 4.1193 2.1329 -0.0103 33 1 5.3565 0.0055 -0.0110 34 1 4.5283 -2.8159 -1.0291 35 1 5.3043 -2.3650 0.5079 36 1 3.7664 -3.2610 0.5167 37 1 2.1407 -3.1954 -0.0565 38 1 -0.0667 -1.7089 1.2106 39 1 1.2732 -2.4755 2.0966 40 1 -0.7555 -3.6896 4.2100 41 1 -0.6293 -2.3031 3.0991 42 1 -2.8260 -2.3836 4.3300 43 1 -3.0139 -2.4623 2.5611 44 1 -4.4414 -4.1543 3.7048 45 1 -2.9874 -4.8690 4.4416 46 1 -4.4337 -9.1872 0.7993 47 1 -1.4692 -5.9537 1.2068 48 1 -1.2997 -6.0703 2.9761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:43 Heat of formation + Delta-G solvation = -5.328757 kcal Electronic energy + Delta-G solvation = -27168.070619 eV Core-core repulsion = 23608.638489 eV Total energy + Delta-G solvation = -3559.432130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54664 -39.55225 -37.14147 -35.57170 -33.92289 -33.46115 -31.98129 -30.93301 -30.44893 -28.41262 -26.95193 -26.04532 -25.23043 -23.92009 -22.08397 -21.43332 -21.00389 -19.81176 -18.65567 -17.63610 -16.78068 -16.74757 -16.24895 -15.60725 -15.22673 -15.00888 -14.43086 -14.29369 -14.03017 -13.97601 -13.78988 -13.66386 -13.45584 -13.16490 -13.12529 -12.94954 -12.80285 -12.62422 -12.37403 -12.15613 -11.97900 -11.62789 -11.37620 -11.24389 -11.16071 -11.09229 -10.64966 -10.43031 -10.13159 -10.08386 -9.78417 -9.52916 -9.20717 -9.08500 -8.76200 -8.61487 -8.12139 -7.95833 -6.11729 -4.13604 1.16763 1.19700 2.87305 3.19009 3.38037 3.46553 3.53425 3.57988 3.98947 4.41657 4.55132 4.58885 4.64699 4.78905 4.99346 5.02931 5.08276 5.14054 5.16825 5.20585 5.28296 5.29035 5.34490 5.38924 5.43950 5.46335 5.60606 5.64840 5.74778 5.87241 5.93582 5.99002 6.05232 6.13041 6.17941 6.29135 6.35205 6.39070 6.48525 6.52936 6.61912 6.71236 6.81496 6.95480 7.12126 7.21882 7.41128 7.69947 7.79681 8.42856 8.52102 8.91152 9.49842 11.00182 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.003524 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.416607 B = 7943.467734 C = 8611.011435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C -0.103 4.103 4 C -0.142 4.142 5 C -0.101 4.101 6 C -0.132 4.132 7 C -0.116 4.116 8 C 0.117 3.883 9 N -0.617 5.617 10 C 0.030 3.970 11 C 0.504 3.496 12 O -0.533 6.533 13 N -0.607 5.607 14 C 0.108 3.892 15 C -0.137 4.137 16 C -0.100 4.100 17 C 0.005 3.995 18 H 0.031 0.969 19 C -0.517 4.517 20 H 0.077 0.923 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.263 1.263 27 C 0.103 3.897 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.366 0.634 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.265 0.735 47 H 0.079 0.921 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.738 19.996 1.517 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.103 4.103 3 C -0.121 4.121 4 C -0.161 4.161 5 C -0.120 4.120 6 C -0.136 4.136 7 C -0.173 4.173 8 C 0.017 3.983 9 N -0.243 5.243 10 C -0.100 4.100 11 C 0.290 3.710 12 O -0.410 6.410 13 N -0.340 5.340 14 C -0.015 4.015 15 C -0.175 4.175 16 C -0.138 4.138 17 C -0.014 4.014 18 H 0.049 0.951 19 C -0.555 4.555 20 H 0.095 0.905 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.711 3.289 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.188 1.188 27 C -0.018 4.018 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.191 0.809 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.223 19.505 0.554 24.749 hybrid contribution 1.178 -0.099 -0.301 1.220 sum 16.400 19.406 0.253 25.409 Atomic orbital electron populations 1.20904 0.91057 1.03593 1.01852 1.19554 0.96081 0.91510 1.03202 1.20895 0.94150 0.97035 1.00031 1.20999 0.94222 0.97785 1.03124 1.20821 0.99426 0.91622 1.00088 1.20001 0.92675 0.96043 1.04842 1.20732 0.99833 0.94010 1.02708 1.18529 0.90524 0.90153 0.99056 1.57109 1.25717 1.03577 1.37909 1.22277 0.97867 0.98378 0.91441 1.20372 0.80375 0.87867 0.82366 1.90710 1.64454 1.51721 1.34078 1.48420 1.43139 1.20623 1.21844 1.21713 0.97477 0.92707 0.89616 1.22049 0.94506 0.99435 1.01550 1.21491 0.99482 0.93451 0.99371 1.19471 0.90474 0.96878 0.94621 0.95133 1.20951 1.30094 0.99241 1.05231 0.90460 1.25046 0.94995 0.94814 0.98133 1.69888 1.42231 1.07739 1.33463 0.86965 0.79866 0.79404 0.82673 1.20023 1.22313 1.18808 1.22612 0.94111 0.82587 1.02453 0.91386 0.91525 0.90201 0.86023 0.86281 0.86235 0.90799 0.91116 0.91958 0.80899 0.86417 0.91604 0.91352 0.90988 0.91496 0.91923 0.92159 0.92491 0.92490 0.90290 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.12 36.01 0.29 -0.91 16 2 C -0.10 -1.12 5.75 -104.42 -0.60 -1.72 16 3 C -0.10 -0.98 9.70 -39.61 -0.38 -1.36 16 4 C -0.14 -1.28 10.04 -39.55 -0.40 -1.68 16 5 C -0.10 -0.95 9.70 -39.61 -0.38 -1.33 16 6 C -0.13 -1.42 5.90 -104.42 -0.62 -2.03 16 7 C -0.12 -1.05 9.39 36.01 0.34 -0.71 16 8 C 0.12 1.42 5.74 -83.79 -0.48 0.93 16 9 N -0.62 -8.40 5.59 -59.53 -0.33 -8.73 16 10 C 0.03 0.39 3.88 -4.98 -0.02 0.37 16 11 C 0.50 9.04 7.74 -10.99 -0.08 8.96 16 12 O -0.53 -11.89 15.62 5.56 0.09 -11.81 16 13 N -0.61 -10.82 2.97 -172.79 -0.51 -11.34 16 14 C 0.11 1.43 6.33 -3.71 -0.02 1.40 16 15 C -0.14 -1.90 6.11 -26.45 -0.16 -2.06 16 16 C -0.10 -1.82 5.11 -26.53 -0.14 -1.96 16 17 C 0.01 0.12 1.84 -91.67 -0.17 -0.05 16 18 H 0.03 0.75 7.21 -51.93 -0.37 0.38 16 19 C -0.52 -14.25 9.15 -34.44 -0.31 -14.56 16 20 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 21 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 22 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 23 Si 0.88 23.42 24.32 -169.99 -4.13 19.28 16 24 H -0.27 -7.34 6.92 56.52 0.39 -6.95 16 25 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 26 H -0.26 -7.03 6.53 56.52 0.37 -6.66 16 27 C 0.10 2.27 5.10 -3.73 -0.02 2.25 16 28 H 0.07 0.60 7.06 -51.93 -0.37 0.24 16 29 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.08 0.99 6.88 -51.93 -0.36 0.63 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 37 H 0.37 5.00 5.71 -39.29 -0.22 4.77 16 38 H 0.12 1.38 3.89 -51.93 -0.20 1.18 16 39 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.08 1.98 2.32 -51.93 -0.12 1.86 16 48 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -33.50 365.06 -9.24 -42.74 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.36 Total: 3.48 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.26 Total: -12.45 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.07 Total: -46.74 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.13 Total: 19.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.50 -9.24 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.408 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds