Wall clock time and date at job start Tue Mar 31 2020 11:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38231 * 120.00080 * 2 1 4 4 C 1.38233 * 120.00080 * 180.29398 * 3 2 1 5 5 C 1.38240 * 120.00213 * 359.70027 * 4 3 2 6 6 C 1.38233 * 119.99280 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99851 * 179.97438 * 6 5 4 8 8 C 1.38236 * 119.99855 * 179.73699 * 2 1 3 9 9 C 1.50693 * 119.99954 * 0.02562 * 8 2 1 10 10 N 1.46500 * 109.47186 * 269.72271 * 9 8 2 11 11 C 1.46502 * 120.00336 * 270.00075 * 10 9 8 12 12 C 1.34776 * 119.99930 * 90.00078 * 10 9 8 13 13 O 1.21592 * 120.00056 * 356.73713 * 12 10 9 14 14 N 1.34773 * 120.00215 * 176.73282 * 12 10 9 15 15 C 1.46497 * 120.00207 * 185.08068 * 14 12 10 16 16 C 1.53004 * 109.47300 * 175.14287 * 15 14 12 17 17 C 1.50704 * 115.54886 * 65.19931 * 16 15 14 18 18 H 1.08001 * 119.99830 * 266.70219 * 17 16 15 19 19 C 1.37871 * 120.00007 * 86.70457 * 17 16 15 20 20 N 1.31510 * 120.00151 * 178.29563 * 19 17 16 21 21 Si 1.86800 * 120.00030 * 358.28801 * 19 17 16 22 22 H 1.48498 * 109.46842 * 91.03728 * 21 19 17 23 23 H 1.48498 * 109.47295 * 211.03538 * 21 19 17 24 24 H 1.48496 * 109.47245 * 331.03871 * 21 19 17 25 25 C 1.52996 * 117.49978 * 279.53229 * 16 15 14 26 26 C 1.52992 * 117.50129 * 210.86940 * 16 15 14 27 27 H 1.09003 * 109.46987 * 270.26511 * 1 2 3 28 28 H 1.09000 * 109.47189 * 30.25964 * 1 2 3 29 29 H 1.08995 * 109.47188 * 150.26239 * 1 2 3 30 30 H 1.08003 * 120.00462 * 0.02562 * 3 2 1 31 31 H 1.08006 * 120.00621 * 179.72078 * 4 3 2 32 32 H 1.07993 * 120.00541 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47138 * 270.02292 * 7 6 5 34 34 H 1.09003 * 109.47319 * 30.02149 * 7 6 5 35 35 H 1.08997 * 109.47426 * 150.02316 * 7 6 5 36 36 H 1.09002 * 109.47208 * 149.72614 * 9 8 2 37 37 H 1.08995 * 109.47455 * 29.72789 * 9 8 2 38 38 H 1.08999 * 109.46724 * 90.24733 * 11 10 9 39 39 H 1.08996 * 109.47514 * 210.24818 * 11 10 9 40 40 H 1.09006 * 109.46839 * 330.25123 * 11 10 9 41 41 H 0.97005 * 120.00002 * 5.08293 * 14 12 10 42 42 H 1.09000 * 109.47475 * 295.14203 * 15 14 12 43 43 H 1.08996 * 109.47310 * 55.14730 * 15 14 12 44 44 H 0.96998 * 120.00349 * 179.97438 * 20 19 17 45 45 H 1.09008 * 117.49933 * 359.97438 * 25 16 15 46 46 H 1.09004 * 117.50271 * 145.01960 * 25 16 15 47 47 H 1.09000 * 117.50301 * 214.97759 * 26 16 15 48 48 H 1.09005 * 117.50276 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0061 5 6 4.2718 0.0000 -0.0060 6 6 3.5805 -1.1971 -0.0003 7 6 4.3340 -2.5023 -0.0007 8 6 2.1982 -1.1972 0.0055 9 6 1.4447 -2.5022 0.0109 10 7 1.2057 -2.9224 1.3939 11 6 2.1849 -3.7669 2.0825 12 6 0.0850 -2.5320 2.0327 13 8 -0.6989 -1.7830 1.4824 14 7 -0.1668 -2.9720 3.2814 15 6 -1.4357 -2.6388 3.9335 16 6 -1.5190 -3.3548 5.2831 17 6 -0.5061 -2.9225 6.3119 18 1 0.4288 -3.4550 6.4062 19 6 -0.7729 -1.8474 7.1326 20 7 0.0964 -1.4909 8.0528 21 14 -2.3691 -0.8968 6.9375 22 1 -3.4065 -1.4846 7.8227 23 1 -2.1480 0.5237 7.3095 24 1 -2.8218 -0.9741 5.5254 25 6 -1.9359 -4.8269 5.2773 26 6 -2.9071 -3.7579 5.7844 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5097 30 1 1.6583 2.1325 0.0004 31 1 4.1206 2.1324 -0.0107 32 1 5.3517 -0.0001 -0.0112 33 1 4.5114 -2.8190 -1.0285 34 1 5.2885 -2.3710 0.5089 35 1 3.7470 -3.2609 0.5170 36 1 2.0318 -3.2629 -0.5036 37 1 0.4904 -2.3729 -0.4996 38 1 2.9110 -3.1366 2.5959 39 1 1.6734 -4.3979 2.8092 40 1 2.6992 -4.3945 1.3545 41 1 0.4921 -3.5093 3.7485 42 1 -1.4920 -1.5615 4.0897 43 1 -2.2640 -2.9581 3.3012 44 1 -0.0912 -0.7343 8.6301 45 1 -2.1512 -5.2852 4.3120 46 1 -1.4779 -5.4827 6.0178 47 1 -3.0877 -3.7110 6.8583 48 1 -3.7612 -3.5127 5.1530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894564260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:05 Heat of formation + Delta-G solvation = 15.232505 kcal Electronic energy + Delta-G solvation = -27385.818193 eV Core-core repulsion = 23827.277665 eV Total energy + Delta-G solvation = -3558.540527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50311 -40.23354 -38.78587 -36.59311 -35.15853 -34.33580 -34.21150 -33.05568 -29.50567 -28.54144 -27.69104 -27.32506 -27.18534 -25.72598 -23.31820 -22.03229 -21.57762 -21.14666 -20.55598 -19.08215 -18.20915 -17.38604 -17.31104 -16.92210 -16.64484 -16.50863 -15.70328 -15.44247 -15.32795 -14.89914 -14.73260 -14.58883 -14.37682 -14.21767 -13.96132 -13.88994 -13.75249 -13.66795 -13.35634 -13.24186 -13.08731 -12.72741 -12.54500 -12.40470 -12.25822 -12.17074 -11.96057 -11.76205 -11.70306 -11.56481 -10.98230 -10.90350 -10.66153 -10.35311 -9.94663 -9.57224 -9.38555 -9.30668 -8.29941 -6.35463 0.38517 0.49952 1.32765 1.39067 1.49349 1.85786 2.28358 2.36387 2.83995 3.05243 3.09555 3.40408 3.87818 3.90718 4.04990 4.08030 4.14633 4.18194 4.31470 4.38746 4.41990 4.44636 4.50801 4.57721 4.66126 4.67428 4.75918 4.82312 4.85603 4.88125 4.88493 4.91935 5.02689 5.05572 5.11269 5.15370 5.32109 5.35835 5.45614 5.50703 5.59628 5.65049 5.68832 5.70684 5.77334 5.83715 6.06298 6.19253 6.28756 6.72330 7.13764 7.35050 7.73997 8.84695 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.003925 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.501040 B = 7132.666263 C = 7488.568007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.116 4.116 5 C -0.144 4.144 6 C -0.072 4.072 7 C -0.124 4.124 8 C -0.127 4.127 9 C 0.172 3.828 10 N -0.623 5.623 11 C 0.073 3.927 12 C 0.689 3.311 13 O -0.614 6.614 14 N -0.723 5.723 15 C 0.188 3.812 16 C -0.040 4.040 17 C -0.475 4.475 18 H 0.045 0.955 19 C 0.027 3.973 20 N -0.944 5.944 21 Si 0.927 3.073 22 H -0.265 1.265 23 H -0.305 1.305 24 H -0.242 1.242 25 C -0.149 4.149 26 C -0.192 4.192 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.403 0.597 42 H 0.027 0.973 43 H 0.054 0.946 44 H 0.263 0.737 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 -3.722 -18.944 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.076 4.076 3 C -0.172 4.172 4 C -0.134 4.134 5 C -0.162 4.162 6 C -0.073 4.073 7 C -0.180 4.180 8 C -0.128 4.128 9 C 0.050 3.950 10 N -0.360 5.360 11 C -0.069 4.069 12 C 0.390 3.610 13 O -0.496 6.496 14 N -0.378 5.378 15 C 0.063 3.937 16 C -0.041 4.041 17 C -0.513 4.513 18 H 0.063 0.937 19 C -0.171 4.171 20 N -0.584 5.584 21 Si 0.753 3.247 22 H -0.191 1.191 23 H -0.233 1.233 24 H -0.165 1.165 25 C -0.186 4.186 26 C -0.230 4.230 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.128 0.872 41 H 0.239 0.761 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.120 0.880 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.352 -3.122 -19.188 20.452 hybrid contribution -0.308 0.980 1.015 1.444 sum 6.044 -2.142 -18.173 19.271 Atomic orbital electron populations 1.20944 0.90739 1.01287 1.02586 1.20138 0.96587 0.93483 0.97436 1.21217 0.95172 0.97565 1.03267 1.21396 0.93886 0.99194 0.98922 1.21300 1.00712 0.91869 1.02323 1.20111 0.92624 0.96930 0.97599 1.21097 1.00070 0.93188 1.03642 1.20144 0.93899 0.95331 1.03432 1.20329 1.00207 0.93089 0.81395 1.46972 1.20401 1.54243 1.14337 1.22017 0.92053 0.94258 0.98557 1.16235 0.82833 0.80358 0.81526 1.90855 1.50619 1.40021 1.68086 1.45109 1.21071 1.57224 1.14364 1.20662 0.84233 0.97414 0.91403 1.19458 0.95015 0.96065 0.93559 1.20338 1.02189 1.13433 1.15302 0.93713 1.25664 0.99345 0.97715 0.94334 1.70009 1.37904 1.28676 1.21832 0.86073 0.81180 0.76896 0.80569 1.19058 1.23253 1.16524 1.22842 1.02595 0.91287 1.01914 1.23011 0.93418 1.06016 1.00522 0.91631 0.92783 0.91294 0.85975 0.84338 0.84049 0.89384 0.90566 0.90337 0.86704 0.90200 0.93303 0.91131 0.87216 0.76065 0.95444 0.92741 0.92777 0.88009 0.89596 0.90370 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.16 7.91 71.24 0.56 -2.59 16 2 C -0.08 -2.26 5.88 -19.87 -0.12 -2.38 16 3 C -0.15 -4.19 9.70 22.27 0.22 -3.98 16 4 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 5 C -0.14 -3.10 9.70 22.27 0.22 -2.89 16 6 C -0.07 -1.58 5.88 -19.86 -0.12 -1.70 16 7 C -0.12 -1.79 9.19 71.24 0.65 -1.13 16 8 C -0.13 -3.32 5.46 -19.87 -0.11 -3.43 16 9 C 0.17 4.07 4.90 85.63 0.42 4.49 16 10 N -0.62 -16.89 2.86 -869.32 -2.48 -19.37 16 11 C 0.07 1.50 8.87 127.77 1.13 2.64 16 12 C 0.69 24.67 8.27 179.06 1.48 26.15 16 13 O -0.61 -24.91 10.80 -4.01 -0.04 -24.95 16 14 N -0.72 -26.95 5.34 -478.54 -2.55 -29.51 16 15 C 0.19 7.80 5.12 86.38 0.44 8.24 16 16 C -0.04 -1.70 0.84 -52.93 -0.04 -1.74 16 17 C -0.47 -25.18 9.18 25.60 0.24 -24.95 16 18 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 19 C 0.03 1.55 5.47 84.65 0.46 2.01 16 20 N -0.94 -57.74 13.96 21.44 0.30 -57.44 16 21 Si 0.93 44.69 24.90 68.60 1.71 46.39 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 24 H -0.24 -11.02 5.73 99.48 0.57 -10.45 16 25 C -0.15 -5.28 9.96 30.62 0.30 -4.98 16 26 C -0.19 -7.38 7.63 30.62 0.23 -7.14 16 27 H 0.07 2.57 5.88 -2.39 -0.01 2.56 16 28 H 0.05 1.51 8.09 -2.39 -0.02 1.50 16 29 H 0.07 2.18 5.26 -2.39 -0.01 2.17 16 30 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.08 1.05 3.40 -2.39 -0.01 1.05 16 36 H 0.12 1.86 6.47 -2.39 -0.02 1.85 16 37 H 0.08 2.12 5.44 -2.39 -0.01 2.10 16 38 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 39 H 0.07 1.48 6.32 -2.39 -0.02 1.46 16 40 H 0.11 1.39 6.46 -2.38 -0.02 1.38 16 41 H 0.40 14.25 6.07 -92.70 -0.56 13.69 16 42 H 0.03 1.30 6.60 -2.39 -0.02 1.29 16 43 H 0.05 2.12 8.09 -2.39 -0.02 2.10 16 44 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 46 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 47 H 0.08 3.20 7.31 -2.39 -0.02 3.19 16 48 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -68.90 366.52 3.40 -65.49 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: 0.28 Total: 35.23 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 6.20 Total: -15.84 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.74 Total: -106.33 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.04 Total: -24.95 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.71 Total: 46.39 kcal Total: -68.90 3.40 -65.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894564260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.727 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds