Wall clock time and date at job start Tue Mar 31 2020 11:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38360 * 119.92527 * 2 1 4 4 C 1.38360 * 120.29099 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.92852 * 180.02562 * 4 3 2 6 6 C 1.37961 * 120.14731 * 0.02562 * 4 3 2 7 7 C 1.39584 * 119.84924 * 0.02562 * 6 4 3 8 8 C 1.47846 * 120.14116 * 179.97438 * 7 6 4 9 9 O 1.21551 * 120.00250 * 35.27841 * 8 7 6 10 10 N 1.34771 * 120.00011 * 215.27175 * 8 7 6 11 11 C 1.46929 * 120.62796 * 5.78389 * 10 8 7 12 12 C 1.53196 * 108.77556 * 126.36595 * 11 10 8 13 13 C 1.53037 * 109.31334 * 54.63305 * 12 11 10 14 14 H 1.09002 * 109.46016 * 58.65322 * 13 12 11 15 15 N 1.46503 * 109.46179 * 178.61373 * 13 12 11 16 16 C 1.36930 * 120.00042 * 275.00275 * 15 13 12 17 17 H 1.08007 * 120.00246 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00114 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00143 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00281 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47042 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47343 * 120.00178 * 20 18 16 23 23 H 1.48508 * 109.47147 * 240.00098 * 20 18 16 24 24 C 1.53043 * 109.53893 * 298.63654 * 13 12 11 25 25 C 1.46922 * 120.63340 * 185.49759 * 10 8 7 26 26 H 1.09005 * 109.58761 * 113.84848 * 25 10 8 27 27 C 1.53001 * 109.58767 * 353.42230 * 25 10 8 28 28 C 1.37952 * 119.92711 * 179.73323 * 2 1 3 29 29 H 1.08998 * 109.46901 * 90.00032 * 1 2 3 30 30 H 1.09001 * 109.46920 * 209.99728 * 1 2 3 31 31 H 1.08999 * 109.47335 * 329.99424 * 1 2 3 32 32 H 1.07999 * 119.85690 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47250 * 90.00135 * 5 4 3 34 34 H 1.09000 * 109.47398 * 210.00642 * 5 4 3 35 35 H 1.09000 * 109.47160 * 329.99938 * 5 4 3 36 36 H 1.07994 * 120.07787 * 180.02562 * 6 4 3 37 37 H 1.08997 * 109.58454 * 246.14892 * 11 10 8 38 38 H 1.09000 * 109.59056 * 6.57486 * 11 10 8 39 39 H 1.08997 * 109.49639 * 174.58226 * 12 11 10 40 40 H 1.09001 * 109.49619 * 294.68281 * 12 11 10 41 41 H 0.97001 * 120.00051 * 94.99908 * 15 13 12 42 42 H 0.97001 * 120.00607 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49440 * 181.31921 * 24 13 12 44 44 H 1.09001 * 109.49686 * 301.40997 * 24 13 12 45 45 H 1.09010 * 109.46712 * 63.85837 * 27 25 10 46 46 H 1.08996 * 109.47675 * 183.85793 * 27 25 10 47 47 H 1.09003 * 109.47151 * 303.86349 * 27 25 10 48 48 H 1.08005 * 120.07714 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.3243 2.5187 0.0011 6 6 4.2813 0.0194 0.0005 7 6 3.5910 -1.1938 -0.0005 8 6 4.3352 -2.4713 -0.0011 9 8 5.3834 -2.5644 0.6072 10 7 3.8513 -3.5328 -0.6760 11 6 2.6542 -3.4021 -1.5179 12 6 2.9814 -3.9163 -2.9234 13 6 3.5289 -5.3420 -2.8261 14 1 2.7900 -5.9827 -2.3448 15 7 3.8119 -5.8491 -4.1712 16 6 2.8127 -6.4234 -4.9106 17 1 1.8161 -6.5030 -4.5022 18 6 3.0807 -6.9034 -6.1852 19 7 4.2952 -6.8060 -6.6833 20 14 1.7175 -7.6862 -7.1944 21 1 0.4543 -7.6740 -6.4137 22 1 1.5300 -6.9196 -8.4523 23 1 2.0846 -9.0881 -7.5191 24 6 4.8174 -5.3403 -2.0003 25 6 4.5142 -4.8410 -0.5888 26 1 3.8571 -5.5509 -0.0864 27 6 5.8205 -4.7028 0.1958 28 6 2.1953 -1.1956 0.0056 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6537 2.1324 0.0004 33 1 4.5032 2.8346 1.0289 34 1 5.2779 2.3959 -0.5125 35 1 3.7297 3.2740 -0.5128 36 1 5.3612 0.0276 0.0014 37 1 1.8424 -3.9923 -1.0928 38 1 2.3579 -2.3546 -1.5718 39 1 2.0766 -3.9147 -3.5312 40 1 3.7296 -3.2698 -3.3822 41 1 4.7071 -5.7779 -4.5379 42 1 4.4826 -7.1417 -7.5738 43 1 5.2193 -6.3523 -1.9511 44 1 5.5483 -4.6805 -2.4678 45 1 5.5989 -4.4045 1.2206 46 1 6.3442 -5.6587 0.2009 47 1 6.4488 -3.9467 -0.2750 48 1 1.6553 -2.1309 0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:29 Heat of formation + Delta-G solvation = 9.704519 kcal Electronic energy + Delta-G solvation = -26935.428146 eV Core-core repulsion = 23376.647908 eV Total energy + Delta-G solvation = -3558.780238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83892 -39.16161 -37.32342 -34.60999 -33.85946 -33.33576 -31.92870 -31.41687 -29.25619 -27.61479 -27.16952 -26.81011 -24.61853 -23.72151 -22.90847 -21.54595 -20.77629 -20.05740 -18.94405 -17.15004 -16.70358 -16.51775 -16.18047 -15.42641 -15.10158 -14.82238 -14.39920 -14.22400 -13.87411 -13.78025 -13.55604 -13.44217 -13.28008 -13.15039 -13.04224 -12.78988 -12.58794 -12.22312 -12.12962 -12.04227 -11.72004 -11.63496 -11.52726 -11.35533 -11.15542 -10.93157 -10.81791 -10.74925 -10.42999 -10.21496 -9.83572 -9.72147 -9.09519 -8.94937 -8.85974 -8.70441 -8.38815 -6.98684 -5.78838 -3.08071 0.81754 1.14230 2.77302 3.04631 3.41027 3.46388 3.48938 3.62249 4.40389 4.51779 4.56009 4.56406 4.87309 5.01782 5.04733 5.08980 5.17689 5.21959 5.28042 5.34745 5.35401 5.38252 5.40014 5.50386 5.55908 5.56664 5.61439 5.65392 5.80707 5.83434 5.91789 5.94243 6.02894 6.14840 6.16228 6.25037 6.27618 6.34356 6.40003 6.46623 6.50397 6.55867 6.72134 6.77822 6.91561 7.05072 7.54476 7.67255 8.26721 8.39255 9.50562 10.08274 10.43067 11.43765 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003335 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.496363 B = 8394.924119 C = 9365.265398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.091 4.091 5 C -0.113 4.113 6 C -0.072 4.072 7 C -0.118 4.118 8 C 0.557 3.443 9 O -0.535 6.535 10 N -0.595 5.595 11 C 0.093 3.907 12 C -0.151 4.151 13 C 0.179 3.821 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.135 4.135 25 C 0.147 3.853 26 H 0.071 0.929 27 C -0.134 4.134 28 C -0.097 4.097 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 16.014 16.193 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.092 4.092 5 C -0.170 4.170 6 C -0.091 4.091 7 C -0.121 4.121 8 C 0.346 3.654 9 O -0.414 6.414 10 N -0.327 5.327 11 C -0.029 4.029 12 C -0.192 4.192 13 C 0.069 3.931 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.174 4.174 25 C 0.044 3.956 26 H 0.089 0.911 27 C -0.191 4.191 28 C -0.116 4.116 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.186 15.833 16.421 23.192 hybrid contribution -0.541 -0.449 -0.984 1.209 sum -4.727 15.385 15.437 22.301 Atomic orbital electron populations 1.20803 0.90703 1.02893 1.02713 1.19845 0.96321 0.92758 1.00203 1.21064 0.93477 0.97639 0.99849 1.19848 0.93794 0.95270 1.00240 1.20787 1.00126 0.93641 1.02438 1.21052 1.00231 0.90409 0.97394 1.20007 0.93822 0.93872 1.04409 1.18340 0.84645 0.83237 0.79178 1.90820 1.22407 1.83220 1.44965 1.48098 1.29052 1.09573 1.45988 1.22344 0.86452 1.02287 0.91852 1.22683 1.02405 1.00208 0.93880 1.20171 0.93861 0.91883 0.87228 0.93470 1.42439 1.10991 1.70582 1.12397 1.19272 0.90961 1.30645 0.96131 0.91131 1.24751 0.96564 1.01975 0.97662 1.69673 1.18861 1.52107 1.17361 0.86143 0.81122 0.78799 0.80266 1.20552 1.21890 1.21886 1.22228 0.99551 1.01667 0.93993 1.21251 0.94608 0.82810 0.96886 0.91078 1.22208 0.95769 1.00337 1.00819 1.21410 0.92934 0.98418 0.98821 0.90797 0.91337 0.91492 0.85843 0.91072 0.91297 0.91436 0.85221 0.91445 0.89128 0.90620 0.92197 0.78258 0.93544 0.90543 0.91780 0.91439 0.93835 0.91105 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.88 5.87 -104.68 -0.61 -1.49 16 3 C -0.10 -0.94 9.35 -39.49 -0.37 -1.31 16 4 C -0.09 -0.92 5.87 -104.68 -0.61 -1.53 16 5 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 6 C -0.07 -0.87 9.26 -39.18 -0.36 -1.24 16 7 C -0.12 -1.54 5.28 -104.96 -0.55 -2.10 16 8 C 0.56 8.44 7.30 -12.33 -0.09 8.35 16 9 O -0.54 -9.23 12.23 5.32 0.07 -9.16 16 10 N -0.59 -8.64 2.98 -166.58 -0.50 -9.14 16 11 C 0.09 1.26 4.78 -3.71 -0.02 1.24 16 12 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 13 C 0.18 3.44 2.73 -67.89 -0.19 3.26 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -17.83 5.12 -53.38 -0.27 -18.11 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.63 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 20 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C -0.14 -2.30 4.81 -26.83 -0.13 -2.43 16 25 C 0.15 2.19 3.47 -67.82 -0.24 1.96 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 C -0.13 -1.98 7.58 37.16 0.28 -1.70 16 28 C -0.10 -1.08 7.00 -39.19 -0.27 -1.35 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.13 1.57 8.00 -52.49 -0.42 1.15 16 37 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.09 1.11 4.47 -51.93 -0.23 0.88 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.38 10.20 7.80 -40.82 -0.32 9.89 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.03 6.74 -51.92 -0.35 0.68 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 1.17 6.75 -51.93 -0.35 0.82 16 48 H 0.13 1.34 6.07 -52.48 -0.32 1.03 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -31.35 376.33 -10.03 -41.38 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.86 Total: 8.66 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.84 Total: -9.10 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.04 Total: -54.51 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.35 -10.03 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.083 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds