Wall clock time and date at job start Tue Mar 31 2020 11:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38365 * 119.92804 * 2 1 4 4 C 1.38354 * 120.29474 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.92508 * 179.97438 * 4 3 2 6 6 C 1.37948 * 120.14748 * 0.02562 * 4 3 2 7 7 C 1.39580 * 119.85155 * 359.97438 * 6 4 3 8 8 C 1.47846 * 120.14203 * 179.97438 * 7 6 4 9 9 O 1.21555 * 120.00101 * 33.74927 * 8 7 6 10 10 N 1.34779 * 119.99983 * 213.74214 * 8 7 6 11 11 C 1.46928 * 120.63118 * 6.28397 * 10 8 7 12 12 C 1.53185 * 108.77518 * 233.58579 * 11 10 8 13 13 C 1.53042 * 109.31350 * 305.36283 * 12 11 10 14 14 H 1.09001 * 109.45047 * 181.38210 * 13 12 11 15 15 N 1.46507 * 109.45837 * 301.34592 * 13 12 11 16 16 C 1.36937 * 119.99791 * 275.07089 * 15 13 12 17 17 H 1.07997 * 120.00294 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99358 * 179.72540 * 16 15 13 19 19 N 1.31622 * 119.99787 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00338 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47265 * 90.00219 * 20 18 16 22 22 H 1.48500 * 109.47204 * 209.99967 * 20 18 16 23 23 H 1.48495 * 109.47266 * 329.99929 * 20 18 16 24 24 C 1.53035 * 109.53855 * 61.36430 * 13 12 11 25 25 C 1.46921 * 120.63304 * 186.25657 * 10 8 7 26 26 H 1.09000 * 109.70446 * 246.27773 * 25 10 8 27 27 C 1.53008 * 109.58708 * 6.63083 * 25 10 8 28 28 C 1.37956 * 119.93200 * 180.24945 * 2 1 3 29 29 H 1.08994 * 109.47253 * 90.00544 * 1 2 3 30 30 H 1.09005 * 109.47024 * 209.99904 * 1 2 3 31 31 H 1.08992 * 109.47792 * 329.99925 * 1 2 3 32 32 H 1.08007 * 119.84964 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46793 * 270.01914 * 5 4 3 34 34 H 1.08997 * 109.47040 * 30.02442 * 5 4 3 35 35 H 1.08998 * 109.46768 * 150.01895 * 5 4 3 36 36 H 1.08000 * 120.07910 * 179.97438 * 6 4 3 37 37 H 1.09008 * 109.58520 * 353.37240 * 11 10 8 38 38 H 1.09001 * 109.58861 * 113.65211 * 11 10 8 39 39 H 1.09006 * 109.49870 * 185.41262 * 12 11 10 40 40 H 1.09001 * 109.50336 * 65.31806 * 12 11 10 41 41 H 0.96997 * 119.99810 * 95.06312 * 15 13 12 42 42 H 0.97000 * 120.00384 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.49884 * 58.58920 * 24 13 12 44 44 H 1.09000 * 109.49932 * 178.68662 * 24 13 12 45 45 H 1.08994 * 109.47321 * 172.10738 * 27 25 10 46 46 H 1.09001 * 109.46981 * 292.10828 * 27 25 10 47 47 H 1.08995 * 109.46905 * 52.10842 * 27 25 10 48 48 H 1.08001 * 120.07207 * 0.02735 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.3242 2.5189 -0.0001 6 6 4.2812 0.0196 0.0005 7 6 3.5910 -1.1937 0.0005 8 6 4.3353 -2.4712 0.0000 9 8 5.3977 -2.5559 0.5844 10 7 3.8356 -3.5419 -0.6484 11 6 2.6250 -3.4204 -1.4721 12 6 1.6098 -4.4724 -1.0146 13 6 2.2617 -5.8564 -1.0557 14 1 1.5338 -6.6096 -0.7540 15 7 2.7208 -6.1394 -2.4179 16 6 1.8527 -6.6639 -3.3379 17 1 0.8297 -6.8694 -3.0592 18 6 2.2863 -6.9267 -4.6301 19 7 1.4520 -7.4313 -5.5143 20 14 4.0536 -6.5642 -5.1142 21 1 4.8933 -7.7612 -4.8550 22 1 4.1111 -6.2225 -6.5582 23 1 4.5613 -5.4207 -4.3144 24 6 3.4552 -5.8886 -0.0984 25 6 4.4914 -4.8526 -0.5455 26 1 4.8977 -5.1374 -1.5160 27 6 5.6220 -4.7811 0.4830 28 6 2.1953 -1.1955 -0.0052 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6536 2.1324 -0.0004 33 1 4.5035 2.8344 -1.0279 34 1 3.7293 3.2742 0.5134 35 1 5.2775 2.3961 0.5139 36 1 5.3612 0.0278 0.0005 37 1 2.1989 -2.4244 -1.3509 38 1 2.8777 -3.5847 -2.5196 39 1 0.7458 -4.4574 -1.6791 40 1 1.2900 -4.2510 0.0036 41 1 3.6397 -5.9551 -2.6680 42 1 1.7550 -7.6153 -6.4172 43 1 3.1182 -5.6538 0.9113 44 1 3.9048 -6.8815 -0.1107 45 1 6.0148 -5.7821 0.6613 46 1 6.4182 -4.1406 0.1037 47 1 5.2384 -4.3697 1.4166 48 1 1.6554 -2.1309 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:32 Heat of formation + Delta-G solvation = 22.819297 kcal Electronic energy + Delta-G solvation = -27611.703863 eV Core-core repulsion = 24053.492324 eV Total energy + Delta-G solvation = -3558.211539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88282 -39.15298 -37.52287 -34.50780 -33.82411 -33.29254 -31.97188 -31.36627 -29.69311 -27.58227 -27.38427 -26.78043 -24.68249 -23.56963 -23.02480 -21.84789 -20.79424 -19.87350 -18.33172 -17.77636 -16.71710 -16.64734 -16.03240 -15.83463 -14.87110 -14.52066 -14.42086 -14.32440 -14.04809 -13.71751 -13.57617 -13.41787 -13.37043 -13.27286 -12.94655 -12.72697 -12.54925 -12.33521 -12.15852 -12.13827 -11.69113 -11.63701 -11.55979 -11.32502 -11.18174 -10.97478 -10.93490 -10.73345 -10.41915 -10.28244 -10.03748 -9.61488 -9.06388 -9.02109 -8.84215 -8.64607 -8.27344 -7.32224 -5.81669 -3.17303 0.84058 1.17368 2.82330 3.11404 3.33295 3.36627 3.42491 3.66104 4.45601 4.54570 4.55538 4.60792 4.91546 5.05985 5.06453 5.11536 5.12718 5.21665 5.29266 5.31771 5.35403 5.37161 5.45376 5.52208 5.55452 5.58056 5.60310 5.65974 5.71725 5.84757 5.86565 5.96614 6.00572 6.02410 6.14671 6.19559 6.28105 6.31772 6.37471 6.38480 6.49308 6.60033 6.61566 6.68516 6.76855 6.94611 7.62522 7.94424 8.31351 8.37473 9.15530 9.88358 10.07992 11.36638 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.004129 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.675477 B = 6779.718690 C = 7330.560749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.103 4.103 4 C -0.093 4.093 5 C -0.113 4.113 6 C -0.073 4.073 7 C -0.118 4.118 8 C 0.556 3.444 9 O -0.539 6.539 10 N -0.592 5.592 11 C 0.084 3.916 12 C -0.150 4.150 13 C 0.180 3.820 14 H 0.061 0.939 15 N -0.746 5.746 16 C -0.243 4.243 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.933 5.933 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.279 1.279 24 C -0.137 4.137 25 C 0.144 3.856 26 H 0.072 0.928 27 C -0.136 4.136 28 C -0.102 4.102 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 17.239 13.376 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.093 4.093 5 C -0.169 4.169 6 C -0.092 4.092 7 C -0.122 4.122 8 C 0.345 3.655 9 O -0.418 6.418 10 N -0.324 5.324 11 C -0.037 4.037 12 C -0.191 4.191 13 C 0.070 3.930 14 H 0.079 0.921 15 N -0.390 5.390 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.580 5.580 20 Si 0.709 3.291 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.176 4.176 25 C 0.041 3.959 26 H 0.089 0.911 27 C -0.193 4.193 28 C -0.120 4.120 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.908 17.049 13.539 21.854 hybrid contribution 1.117 0.137 -0.725 1.339 sum 3.026 17.186 12.814 21.650 Atomic orbital electron populations 1.20810 0.90632 1.02958 1.02788 1.19871 0.96387 0.92722 1.00027 1.21071 0.93468 0.97651 0.99889 1.19832 0.93797 0.95217 1.00425 1.20783 1.00034 0.93654 1.02466 1.21037 1.00166 0.90426 0.97553 1.20010 0.93825 0.93834 1.04482 1.18323 0.84892 0.83349 0.78937 1.90795 1.21868 1.83654 1.45486 1.48072 1.28246 1.08539 1.47590 1.22447 0.84815 1.00837 0.95622 1.22505 0.98792 0.97748 1.00047 1.20150 0.93778 0.93794 0.85242 0.92102 1.42877 1.10833 1.77369 1.07915 1.19065 0.94226 1.33743 0.90257 0.89112 1.24639 0.97042 1.01033 0.96145 1.69691 1.34131 1.49788 1.04427 0.86650 0.86506 0.78155 0.77763 1.21000 1.21711 1.20488 1.22298 0.97095 0.98783 0.99393 1.21264 0.93118 0.81712 0.99781 0.91055 1.22188 0.98004 1.00001 0.99077 1.21579 0.93127 0.98719 0.98570 0.90746 0.91207 0.91492 0.85847 0.91061 0.91478 0.91382 0.85282 0.88424 0.90346 0.90138 0.92920 0.80601 0.93044 0.91536 0.90475 0.93781 0.90872 0.91730 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.01 36.00 0.36 -0.56 16 2 C -0.09 -0.94 5.87 -104.68 -0.61 -1.55 16 3 C -0.10 -1.00 9.34 -39.49 -0.37 -1.37 16 4 C -0.09 -0.97 5.87 -104.68 -0.61 -1.58 16 5 C -0.11 -0.86 10.01 36.01 0.36 -0.49 16 6 C -0.07 -0.92 9.26 -39.19 -0.36 -1.28 16 7 C -0.12 -1.64 5.45 -104.97 -0.57 -2.22 16 8 C 0.56 8.94 7.20 -12.33 -0.09 8.85 16 9 O -0.54 -9.63 12.38 5.32 0.07 -9.56 16 10 N -0.59 -9.45 2.97 -166.32 -0.49 -9.94 16 11 C 0.08 1.31 5.27 -3.71 -0.02 1.29 16 12 C -0.15 -2.34 5.44 -26.61 -0.14 -2.48 16 13 C 0.18 3.22 3.10 -67.89 -0.21 3.01 16 14 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 15 N -0.75 -16.55 4.12 -53.38 -0.22 -16.77 16 16 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -28.59 13.97 55.49 0.78 -27.82 16 20 Si 0.88 21.81 27.73 -169.99 -4.71 17.09 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 24 C -0.14 -2.12 5.07 -26.61 -0.13 -2.26 16 25 C 0.14 2.34 3.19 -67.60 -0.22 2.12 16 26 H 0.07 1.28 6.65 -51.93 -0.35 0.94 16 27 C -0.14 -2.08 7.61 37.16 0.28 -1.80 16 28 C -0.10 -1.24 7.05 -39.19 -0.28 -1.51 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.13 1.60 7.98 -52.49 -0.42 1.18 16 37 H 0.10 1.33 3.52 -51.93 -0.18 1.15 16 38 H 0.08 1.43 7.74 -51.93 -0.40 1.03 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 0.70 7.62 -51.93 -0.40 0.31 16 41 H 0.36 8.07 3.93 -40.82 -0.16 7.91 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.21 6.68 -51.93 -0.35 0.86 16 47 H 0.06 1.03 6.82 -51.93 -0.35 0.68 16 48 H 0.14 1.68 5.00 -52.49 -0.26 1.42 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.27 367.19 -9.44 -40.71 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -7.52 Total: 9.14 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.87 Total: -8.38 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.06 Total: -54.53 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.27 -9.44 -40.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.529 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds