Wall clock time and date at job start Tue Mar 31 2020 11:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38354 * 119.93182 * 2 1 4 4 C 1.38361 * 120.29416 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.93054 * 179.97438 * 4 3 2 6 6 C 1.37957 * 120.14342 * 359.97438 * 4 3 2 7 7 C 1.39573 * 119.85523 * 359.97438 * 6 4 3 8 8 C 1.47843 * 120.14715 * 180.02562 * 7 6 4 9 9 O 1.21557 * 120.00306 * 326.05956 * 8 7 6 10 10 N 1.34782 * 119.99973 * 145.78221 * 8 7 6 11 11 C 1.46920 * 120.63109 * 3.46687 * 10 8 7 12 12 C 1.52765 * 109.01077 * 233.58836 * 11 10 8 13 13 C 1.53032 * 109.38146 * 305.58792 * 12 11 10 14 14 H 1.09004 * 109.45426 * 301.22713 * 13 12 11 15 15 N 1.46504 * 109.46174 * 181.26072 * 13 12 11 16 16 C 1.36940 * 120.00178 * 84.93064 * 15 13 12 17 17 H 1.08001 * 119.99761 * 0.02562 * 16 15 13 18 18 C 1.38804 * 120.00123 * 180.02562 * 16 15 13 19 19 N 1.31626 * 120.00219 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46926 * 89.99373 * 20 18 16 22 22 H 1.48501 * 109.47068 * 209.99808 * 20 18 16 23 23 H 1.48500 * 109.46783 * 329.99779 * 20 18 16 24 24 C 1.53037 * 109.54117 * 61.24223 * 13 12 11 25 25 C 1.46927 * 120.62904 * 183.75277 * 10 8 7 26 26 H 1.09001 * 109.58729 * 246.14799 * 25 10 8 27 27 C 1.52994 * 109.58838 * 6.43772 * 25 10 8 28 28 C 1.37967 * 119.92178 * 180.27941 * 2 1 3 29 29 H 1.08996 * 109.47235 * 89.99652 * 1 2 3 30 30 H 1.08997 * 109.47279 * 210.00177 * 1 2 3 31 31 H 1.09004 * 109.46304 * 329.99966 * 1 2 3 32 32 H 1.07999 * 119.85517 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47261 * 270.02247 * 5 4 3 34 34 H 1.08998 * 109.46923 * 30.01882 * 5 4 3 35 35 H 1.09001 * 109.47468 * 150.01815 * 5 4 3 36 36 H 1.08002 * 120.07646 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.58479 * 353.42256 * 11 10 8 38 38 H 1.09001 * 109.58688 * 113.84802 * 11 10 8 39 39 H 1.09001 * 109.56413 * 185.55134 * 12 11 10 40 40 H 1.08998 * 109.36064 * 65.50057 * 12 11 10 41 41 H 0.97002 * 119.99991 * 264.93410 * 15 13 12 42 42 H 0.96992 * 119.99989 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.50388 * 178.68442 * 24 13 12 44 44 H 1.09002 * 109.52962 * 58.59621 * 24 13 12 45 45 H 1.08993 * 109.47656 * 53.12972 * 27 25 10 46 46 H 1.09002 * 109.47220 * 173.13473 * 27 25 10 47 47 H 1.08999 * 109.46940 * 293.13046 * 27 25 10 48 48 H 1.07996 * 120.07600 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1990 0.0000 4 6 3.5809 1.2077 -0.0005 5 6 4.3246 2.5185 -0.0011 6 6 4.2812 0.0191 -0.0005 7 6 3.5910 -1.1940 0.0005 8 6 4.3350 -2.4716 0.0011 9 8 5.3953 -2.5577 -0.5870 10 7 3.8403 -3.5392 0.6584 11 6 2.5277 -3.4718 1.3150 12 6 2.6794 -3.8945 2.7752 13 6 3.3444 -5.2713 2.8388 14 1 2.7370 -5.9934 2.2930 15 7 3.4634 -5.6917 4.2372 16 6 2.4128 -6.3143 4.8568 17 1 1.4966 -6.4957 4.3145 18 6 2.5254 -6.7121 6.1818 19 7 3.6422 -6.4914 6.8427 20 14 1.0926 -7.5620 7.0269 21 1 1.2053 -9.0302 6.8356 22 1 1.1172 -7.2484 8.4782 23 1 -0.1839 -7.0827 6.4385 24 6 4.7370 -5.1968 2.2086 25 6 4.6062 -4.7906 0.7372 26 1 4.0844 -5.5736 0.1871 27 6 5.9966 -4.5798 0.1347 28 6 2.1952 -1.1958 -0.0058 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3632 0.8901 0.5139 32 1 1.6539 2.1323 0.0004 33 1 4.5031 2.8345 -1.0289 34 1 3.7301 3.2737 0.5131 35 1 5.2783 2.3954 0.5121 36 1 5.3612 0.0272 -0.0005 37 1 2.1482 -2.4510 1.2691 38 1 1.8329 -4.1450 0.8129 39 1 1.6971 -3.9428 3.2451 40 1 3.2986 -3.1668 3.2996 41 1 4.2864 -5.5290 4.7241 42 1 3.7210 -6.7698 7.7684 43 1 5.2192 -6.1720 2.2752 44 1 5.3375 -4.4570 2.7381 45 1 6.4713 -3.7204 0.6082 46 1 6.6042 -5.4690 0.3030 47 1 5.9049 -4.3998 -0.9364 48 1 1.6552 -2.1310 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:35 Heat of formation + Delta-G solvation = 20.464455 kcal Electronic energy + Delta-G solvation = -26990.780154 eV Core-core repulsion = 23432.466502 eV Total energy + Delta-G solvation = -3558.313653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88812 -39.13954 -37.34035 -34.64702 -33.90541 -33.32412 -31.93215 -31.38506 -29.26748 -27.61167 -27.27338 -26.79580 -24.64116 -23.70438 -22.93306 -21.56401 -20.74170 -20.05831 -18.97123 -17.13901 -16.78125 -16.54357 -16.22654 -15.32693 -15.15112 -14.82316 -14.36917 -14.19368 -13.87318 -13.83272 -13.53610 -13.43944 -13.30341 -13.17758 -12.95363 -12.78230 -12.64998 -12.21201 -12.08271 -12.04318 -11.69343 -11.63665 -11.52769 -11.37641 -11.02375 -10.91918 -10.78406 -10.74930 -10.37423 -10.24469 -9.84839 -9.72097 -9.11403 -8.94463 -8.84788 -8.65943 -8.39083 -6.98487 -5.78729 -3.07997 0.82189 1.14028 2.77554 3.05251 3.41303 3.46234 3.48189 3.63201 4.39936 4.52567 4.55892 4.57217 4.86770 5.02259 5.05524 5.09552 5.16872 5.21773 5.28808 5.34808 5.35266 5.39431 5.40159 5.49668 5.56194 5.56968 5.62758 5.66882 5.81247 5.83231 5.92203 5.93812 6.02228 6.14846 6.15748 6.25368 6.27911 6.34964 6.40403 6.46398 6.49459 6.55963 6.72332 6.77086 6.91123 7.05090 7.54883 7.66750 8.27125 8.39470 9.50619 10.08299 10.43105 11.43839 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.003420 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.610435 B = 8184.444259 C = 9233.247076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.102 4.102 4 C -0.091 4.091 5 C -0.113 4.113 6 C -0.072 4.072 7 C -0.117 4.117 8 C 0.557 3.443 9 O -0.536 6.536 10 N -0.593 5.593 11 C 0.075 3.925 12 C -0.150 4.150 13 C 0.179 3.821 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.135 4.135 25 C 0.147 3.853 26 H 0.071 0.929 27 C -0.135 4.135 28 C -0.108 4.108 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.071 0.929 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 15.326 -16.473 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.091 4.091 5 C -0.170 4.170 6 C -0.091 4.091 7 C -0.120 4.120 8 C 0.346 3.654 9 O -0.416 6.416 10 N -0.325 5.325 11 C -0.048 4.048 12 C -0.192 4.192 13 C 0.068 3.932 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.174 4.174 25 C 0.044 3.956 26 H 0.089 0.911 27 C -0.192 4.192 28 C -0.126 4.126 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.463 15.145 -16.693 22.674 hybrid contribution -0.623 -0.475 0.936 1.221 sum -3.087 14.669 -15.758 21.749 Atomic orbital electron populations 1.20810 0.90677 1.03224 1.02465 1.19863 0.96337 0.92765 1.00060 1.21069 0.93482 0.97659 0.99854 1.19849 0.93800 0.95263 1.00194 1.20787 1.00122 0.93645 1.02432 1.21036 1.00226 0.90378 0.97427 1.19994 0.93801 0.93878 1.04334 1.18317 0.84898 0.83198 0.79008 1.90813 1.22405 1.83705 1.44634 1.48099 1.19884 1.12453 1.52070 1.22704 0.83787 1.03492 0.94786 1.22593 1.02732 1.00611 0.93226 1.20172 0.92958 0.92699 0.87328 0.93491 1.42433 1.16751 1.70025 1.07197 1.19227 0.93872 1.29973 0.94001 0.91191 1.24749 0.97322 1.01901 0.96949 1.69664 1.25442 1.52480 1.10448 0.86209 0.81771 0.79419 0.78895 1.21732 1.21799 1.20764 1.22297 0.99328 1.01975 0.93764 1.21339 0.92886 0.84517 0.96850 0.91076 1.22181 0.94265 1.00595 1.02151 1.21633 0.93165 0.98652 0.99144 0.91056 0.91102 0.91366 0.85838 0.91071 0.91428 0.91303 0.85207 0.87648 0.91346 0.90623 0.92226 0.78266 0.93495 0.90566 0.91803 0.91577 0.93743 0.91021 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.88 5.87 -104.68 -0.61 -1.49 16 3 C -0.10 -0.96 9.34 -39.49 -0.37 -1.33 16 4 C -0.09 -0.92 5.87 -104.68 -0.61 -1.54 16 5 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 6 C -0.07 -0.88 9.26 -39.19 -0.36 -1.24 16 7 C -0.12 -1.54 5.51 -104.97 -0.58 -2.12 16 8 C 0.56 8.47 7.28 -12.33 -0.09 8.38 16 9 O -0.54 -9.24 12.30 5.32 0.07 -9.18 16 10 N -0.59 -8.66 2.98 -166.58 -0.50 -9.16 16 11 C 0.07 1.00 4.95 -3.93 -0.02 0.98 16 12 C -0.15 -2.56 5.64 -26.84 -0.15 -2.71 16 13 C 0.18 3.44 2.73 -67.89 -0.19 3.26 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -17.83 5.12 -53.39 -0.27 -18.11 16 16 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 20 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.13 -2.29 4.85 -26.61 -0.13 -2.42 16 25 C 0.15 2.20 3.49 -67.60 -0.24 1.96 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.13 -2.00 7.61 37.15 0.28 -1.71 16 28 C -0.11 -1.21 7.09 -39.18 -0.28 -1.48 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.13 1.58 7.99 -52.49 -0.42 1.16 16 37 H 0.11 1.27 3.51 -53.03 -0.19 1.08 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.08 6.79 -51.93 -0.35 0.73 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.10 6.69 -51.93 -0.35 0.76 16 48 H 0.14 1.45 5.42 -52.49 -0.28 1.16 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -31.42 375.36 -10.00 -41.41 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.78 Total: 9.11 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.87 Total: -9.54 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.04 Total: -54.53 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.42 -10.00 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.879 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds