Wall clock time and date at job start Tue Mar 31 2020 11:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38362 * 119.92314 * 2 1 4 4 C 1.38362 * 120.28943 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.92590 * 179.97438 * 4 3 2 6 6 C 1.37959 * 120.14706 * 359.97438 * 4 3 2 7 7 C 1.39576 * 119.85107 * 0.02562 * 6 4 3 8 8 C 1.47847 * 120.14575 * 179.97438 * 7 6 4 9 9 O 1.21550 * 120.00084 * 318.94282 * 8 7 6 10 10 N 1.34777 * 119.99765 * 138.93192 * 8 7 6 11 11 C 1.46923 * 120.63408 * 354.20065 * 10 8 7 12 12 C 1.53195 * 108.76203 * 233.58885 * 11 10 8 13 13 C 1.53034 * 109.31357 * 305.34172 * 12 11 10 14 14 H 1.09003 * 109.46185 * 301.36968 * 13 12 11 15 15 N 1.46498 * 109.46371 * 181.40203 * 13 12 11 16 16 C 1.36939 * 120.00229 * 84.96567 * 15 13 12 17 17 H 1.07998 * 119.99715 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99985 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99897 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99864 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47623 * 90.00053 * 20 18 16 22 22 H 1.48507 * 109.47049 * 329.99472 * 20 18 16 23 23 H 1.48504 * 109.46811 * 210.00239 * 20 18 16 24 24 C 1.53042 * 109.52860 * 61.38403 * 13 12 11 25 25 C 1.46928 * 120.62910 * 174.16873 * 10 8 7 26 26 H 1.09003 * 109.70171 * 6.56298 * 25 10 8 27 27 C 1.52999 * 109.58750 * 246.20877 * 25 10 8 28 28 C 1.37951 * 119.93131 * 180.26015 * 2 1 3 29 29 H 1.09003 * 109.46966 * 89.99689 * 1 2 3 30 30 H 1.09002 * 109.46885 * 209.99697 * 1 2 3 31 31 H 1.08999 * 109.47034 * 329.99906 * 1 2 3 32 32 H 1.08004 * 119.85606 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.47556 * 269.98318 * 5 4 3 34 34 H 1.09000 * 109.46787 * 29.98685 * 5 4 3 35 35 H 1.09001 * 109.46711 * 149.98243 * 5 4 3 36 36 H 1.07994 * 120.07694 * 179.97438 * 6 4 3 37 37 H 1.08997 * 109.58843 * 353.36618 * 11 10 8 38 38 H 1.09001 * 109.58892 * 113.79334 * 11 10 8 39 39 H 1.09009 * 109.48348 * 185.39835 * 12 11 10 40 40 H 1.09003 * 109.51169 * 65.30377 * 12 11 10 41 41 H 0.96999 * 119.99665 * 264.97476 * 15 13 12 42 42 H 0.96995 * 120.00699 * 0.02562 * 19 18 16 43 43 H 1.09002 * 109.49203 * 58.58440 * 24 13 12 44 44 H 1.09004 * 109.49789 * 178.64286 * 24 13 12 45 45 H 1.09005 * 109.47207 * 300.70482 * 27 25 10 46 46 H 1.09000 * 109.47551 * 60.70562 * 27 25 10 47 47 H 1.09001 * 109.46847 * 180.71204 * 27 25 10 48 48 H 1.08008 * 120.06942 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5809 1.2080 0.0005 5 6 4.3243 2.5189 -0.0001 6 6 4.2813 0.0195 0.0016 7 6 3.5912 -1.1937 0.0016 8 6 4.3353 -2.4712 0.0022 9 8 5.3273 -2.5971 -0.6888 10 7 3.9137 -3.4963 0.7691 11 6 2.7940 -3.3207 1.7039 12 6 3.2428 -3.7654 3.0995 13 6 3.7814 -5.1960 3.0259 14 1 3.0043 -5.8573 2.6427 15 7 4.1806 -5.6367 4.3648 16 6 3.2499 -6.1700 5.2160 17 1 2.2216 -6.2660 4.9002 18 6 3.6281 -6.5871 6.4848 19 7 4.8812 -6.4696 6.8699 20 14 2.3586 -7.3152 7.6457 21 1 2.2962 -8.7861 7.4516 22 1 1.0280 -6.7211 7.3596 23 1 2.7424 -7.0169 9.0489 24 6 4.9934 -5.2390 2.0925 25 6 4.5647 -4.8108 0.6855 26 1 5.4409 -4.7466 0.0403 27 6 3.5815 -5.8348 0.1150 28 6 2.1954 -1.1955 -0.0054 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6536 2.1324 0.0004 33 1 4.5042 2.8341 -1.0278 34 1 3.7291 3.2743 0.5128 35 1 5.2773 2.3962 0.5145 36 1 5.3612 0.0277 0.0016 37 1 2.5020 -2.2709 1.7314 38 1 1.9491 -3.9287 1.3805 39 1 2.3941 -3.7309 3.7826 40 1 4.0272 -3.0994 3.4591 41 1 5.1042 -5.5507 4.6483 42 1 5.5404 -6.0912 6.2673 43 1 5.7612 -4.5590 2.4617 44 1 5.3913 -6.2533 2.0593 45 1 2.7039 -5.8939 0.7589 46 1 3.2777 -5.5283 -0.8860 47 1 4.0623 -6.8118 0.0657 48 1 1.6554 -2.1309 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:37 Heat of formation + Delta-G solvation = -8.739153 kcal Electronic energy + Delta-G solvation = -26958.339607 eV Core-core repulsion = 23398.759591 eV Total energy + Delta-G solvation = -3559.580016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.75970 -39.17917 -37.55098 -34.82827 -33.88259 -33.15235 -31.96198 -31.50892 -29.13895 -27.64213 -27.29084 -26.91544 -24.60338 -23.56672 -23.09108 -21.64743 -20.94037 -20.25574 -18.39393 -17.30236 -17.16756 -16.56711 -16.02110 -15.83880 -14.91675 -14.63593 -14.42018 -14.24282 -14.12869 -13.70484 -13.64193 -13.53565 -13.45611 -13.28713 -13.07185 -12.85057 -12.75825 -12.59334 -12.20716 -11.92283 -11.90131 -11.74943 -11.58664 -11.30016 -11.21689 -10.92070 -10.83310 -10.56262 -10.42343 -10.04512 -9.90258 -9.78433 -9.17916 -8.99993 -8.92297 -8.75828 -8.52118 -7.05724 -6.11706 -3.11970 0.79959 1.11008 2.70331 2.98861 3.49610 3.54415 3.55523 3.68367 4.35215 4.48856 4.53845 4.64493 4.84385 4.95316 4.99685 5.06177 5.14507 5.17070 5.21408 5.24859 5.29010 5.32525 5.36348 5.43493 5.53607 5.55361 5.59068 5.60282 5.70032 5.74243 5.79225 5.83411 5.90215 6.00154 6.09539 6.13588 6.19711 6.23769 6.29272 6.31538 6.39210 6.43297 6.58120 6.70054 6.83281 6.96887 7.47001 7.78561 8.17049 8.73883 9.20880 10.07347 10.22676 11.36666 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.003290 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.317947 B = 8508.728271 C = 9115.537183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.102 4.102 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.074 4.074 7 C -0.115 4.115 8 C 0.559 3.441 9 O -0.544 6.544 10 N -0.594 5.594 11 C 0.099 3.901 12 C -0.150 4.150 13 C 0.184 3.816 14 H 0.052 0.948 15 N -0.736 5.736 16 C -0.331 4.331 17 H 0.064 0.936 18 C -0.045 4.045 19 N -0.944 5.944 20 Si 1.082 2.918 21 H -0.296 1.296 22 H -0.295 1.295 23 H -0.288 1.288 24 C -0.134 4.134 25 C 0.142 3.858 26 H 0.096 0.904 27 C -0.161 4.161 28 C -0.094 4.094 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.366 0.634 42 H 0.256 0.744 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.211 14.734 -16.539 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.090 4.090 5 C -0.170 4.170 6 C -0.093 4.093 7 C -0.118 4.118 8 C 0.348 3.652 9 O -0.422 6.422 10 N -0.326 5.326 11 C -0.024 4.024 12 C -0.191 4.191 13 C 0.074 3.926 14 H 0.070 0.930 15 N -0.377 5.377 16 C -0.462 4.462 17 H 0.082 0.918 18 C -0.243 4.243 19 N -0.589 5.589 20 Si 0.913 3.087 21 H -0.223 1.223 22 H -0.222 1.222 23 H -0.214 1.214 24 C -0.173 4.173 25 C 0.038 3.962 26 H 0.115 0.885 27 C -0.219 4.219 28 C -0.113 4.113 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.199 0.801 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.153 13.947 -15.403 21.975 hybrid contribution 0.430 0.675 -1.335 1.557 sum -6.723 14.622 -16.738 23.220 Atomic orbital electron populations 1.20802 0.90657 1.03168 1.02460 1.19837 0.96335 0.92709 1.00097 1.21070 0.93460 0.97661 0.99857 1.19848 0.93803 0.95247 1.00060 1.20793 1.00140 0.93606 1.02482 1.21043 1.00194 0.90435 0.97629 1.19880 0.93858 0.93586 1.04427 1.18363 0.83836 0.83377 0.79648 1.90751 1.25878 1.82669 1.42950 1.48136 1.34450 1.10620 1.39348 1.22156 0.88332 1.01980 0.89963 1.22656 1.01974 1.00381 0.94086 1.20134 0.94082 0.92295 0.86051 0.92976 1.42453 1.08819 1.74864 1.11599 1.20048 0.91481 1.37636 0.97031 0.91754 1.25756 1.00807 1.01069 0.96631 1.70838 1.01655 1.47914 1.38515 0.83210 0.73567 0.75828 0.76126 1.22333 1.22166 1.21416 1.22225 0.99481 1.01793 0.93836 1.21192 0.96174 0.81134 0.97652 0.88547 1.22149 1.00277 0.98830 1.00601 1.21267 0.92686 0.98348 0.98972 0.91076 0.91169 0.91343 0.85764 0.91023 0.91378 0.91283 0.85294 0.89535 0.91458 0.90615 0.92382 0.80066 0.93314 0.91971 0.90608 0.91629 0.92811 0.91210 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.86 5.87 -104.68 -0.61 -1.48 16 3 C -0.10 -0.95 9.34 -39.49 -0.37 -1.31 16 4 C -0.09 -0.90 5.87 -104.68 -0.61 -1.52 16 5 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 6 C -0.07 -0.91 9.30 -39.19 -0.36 -1.28 16 7 C -0.11 -1.52 5.08 -104.97 -0.53 -2.06 16 8 C 0.56 8.76 7.31 -12.33 -0.09 8.67 16 9 O -0.54 -10.10 16.36 5.32 0.09 -10.01 16 10 N -0.59 -8.72 2.68 -166.33 -0.45 -9.17 16 11 C 0.10 1.35 4.51 -3.71 -0.02 1.33 16 12 C -0.15 -2.60 5.66 -26.61 -0.15 -2.75 16 13 C 0.18 3.56 2.52 -67.89 -0.17 3.39 16 14 H 0.05 1.02 6.44 -51.93 -0.33 0.69 16 15 N -0.74 -18.09 5.12 -53.39 -0.27 -18.36 16 16 C -0.33 -9.09 9.93 -15.06 -0.15 -9.24 16 17 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 18 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 19 N -0.94 -29.09 13.70 55.49 0.76 -28.33 16 20 Si 1.08 25.68 29.92 -169.99 -5.09 20.60 16 21 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.13 -2.28 5.02 -26.61 -0.13 -2.41 16 25 C 0.14 2.11 3.21 -67.60 -0.22 1.89 16 26 H 0.10 1.51 7.00 -51.93 -0.36 1.15 16 27 C -0.16 -2.07 9.02 37.16 0.34 -1.74 16 28 C -0.09 -1.05 7.05 -39.19 -0.28 -1.33 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.09 1.09 4.80 -51.93 -0.25 0.84 16 38 H 0.07 0.83 7.47 -51.93 -0.39 0.44 16 39 H 0.08 1.40 8.14 -51.92 -0.42 0.97 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.37 9.45 6.63 -40.82 -0.27 9.18 16 42 H 0.26 7.78 6.77 -40.82 -0.28 7.51 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 0.86 5.72 -51.93 -0.30 0.57 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.13 1.32 6.70 -52.48 -0.35 0.97 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -32.95 377.27 -9.66 -42.61 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.64 Total: 9.10 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.74 Total: -12.13 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.04 Total: -55.86 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.09 Total: 20.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.95 -9.66 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.874 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds