Wall clock time and date at job start Tue Mar 31 2020 11:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38333 * 120.86804 * 2 1 4 4 C 1.38347 * 119.33597 * 180.25594 * 3 2 1 5 5 N 1.31976 * 121.13919 * 359.76735 * 4 3 2 6 6 C 1.31628 * 121.90668 * 359.96972 * 5 4 3 7 7 C 1.39839 * 120.52306 * 0.02562 * 6 5 4 8 8 C 1.47210 * 120.58702 * 179.97438 * 7 6 5 9 9 C 1.34810 * 120.00134 * 359.97438 * 8 7 6 10 10 C 1.46420 * 120.00086 * 180.02562 * 9 8 7 11 11 O 1.21693 * 120.00189 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99810 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00058 * 359.97438 * 12 10 9 14 14 C 1.50703 * 109.47289 * 270.00143 * 13 12 10 15 15 H 1.07994 * 119.99399 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46762 * 60.00562 * 18 16 14 20 20 H 1.48506 * 109.46725 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00217 * 18 16 14 22 22 C 1.46493 * 120.00131 * 180.02562 * 12 10 9 23 23 C 1.53000 * 109.47156 * 269.99999 * 22 12 10 24 24 C 1.53001 * 109.47231 * 179.97438 * 23 22 12 25 25 C 1.53001 * 109.47025 * 65.00349 * 24 23 22 26 26 C 1.52998 * 109.47164 * 184.99800 * 24 23 22 27 27 H 1.08999 * 109.47445 * 270.24668 * 1 2 3 28 28 H 1.09001 * 109.47049 * 30.24698 * 1 2 3 29 29 H 1.09003 * 109.47243 * 150.24604 * 1 2 3 30 30 H 1.07997 * 120.33534 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.43300 * 179.74359 * 4 3 2 32 32 H 1.08003 * 119.74214 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.00222 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.99383 * 0.02562 * 9 8 7 35 35 H 1.09001 * 109.47060 * 30.00593 * 13 12 10 36 36 H 1.09004 * 109.47073 * 150.00082 * 13 12 10 37 37 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 38 38 H 1.09006 * 109.47571 * 29.99644 * 22 12 10 39 39 H 1.09005 * 109.47727 * 150.00102 * 22 12 10 40 40 H 1.09001 * 109.47195 * 299.99586 * 23 22 12 41 41 H 1.08997 * 109.47280 * 59.99767 * 23 22 12 42 42 H 1.08998 * 109.47659 * 304.99864 * 24 23 22 43 43 H 1.08988 * 109.47634 * 59.99715 * 25 24 23 44 44 H 1.09003 * 109.46795 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.46698 * 299.99509 * 25 24 23 46 46 H 1.09006 * 109.47254 * 59.99975 * 26 24 23 47 47 H 1.08998 * 109.47152 * 180.02562 * 26 24 23 48 48 H 1.09003 * 109.47313 * 300.00391 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5996 1.1504 -0.0054 5 7 4.2517 0.0030 -0.0059 6 6 3.6239 -1.1539 -0.0008 7 6 2.2264 -1.2037 0.0049 8 6 1.5229 -2.4967 0.0100 9 6 2.2262 -3.6468 0.0088 10 6 1.5264 -4.9330 0.0133 11 8 0.3099 -4.9638 0.0178 12 7 2.2297 -6.0827 0.0125 13 6 3.6943 -6.0456 0.0066 14 6 4.1908 -6.0354 -1.4163 15 1 3.4858 -6.0542 -2.2342 16 6 5.5448 -6.0010 -1.6736 17 7 6.4032 -5.9776 -0.6774 18 14 6.1603 -5.9891 -3.4373 19 1 5.6314 -4.7914 -4.1380 20 1 7.6448 -5.9514 -3.4432 21 1 5.6939 -7.2155 -4.1326 22 6 1.5296 -7.3696 0.0165 23 6 1.2906 -7.8157 1.4604 24 6 0.5589 -9.1593 1.4646 25 6 1.4611 -10.2333 0.8533 26 6 0.2095 -9.5453 2.9033 27 1 -0.3634 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3634 -0.8922 -0.5100 30 1 1.6964 2.1338 -0.0004 31 1 4.1553 2.0765 -0.0096 32 1 4.1926 -2.0721 -0.0010 33 1 0.4432 -2.5241 0.0140 34 1 3.3059 -3.6194 0.0044 35 1 4.0370 -5.1459 0.5175 36 1 4.0821 -6.9253 0.5205 37 1 7.3558 -5.9538 -0.8586 38 1 0.5725 -7.2642 -0.4943 39 1 2.1361 -8.1148 -0.4983 40 1 2.2477 -7.9212 1.9713 41 1 0.6842 -7.0705 1.9753 42 1 -0.3562 -9.0767 0.8782 43 1 2.3761 -10.3160 1.4397 44 1 0.9396 -11.1904 0.8559 45 1 1.7100 -9.9583 -0.1717 46 1 -0.4332 -8.7802 3.3389 47 1 -0.3114 -10.5028 2.9063 48 1 1.1246 -9.6280 3.4898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492528607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:20 Heat of formation + Delta-G solvation = -10.885650 kcal Electronic energy + Delta-G solvation = -26139.482610 eV Core-core repulsion = 22579.809515 eV Total energy + Delta-G solvation = -3559.673095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.16364 -39.16192 -36.62570 -34.78988 -34.57352 -33.28393 -32.55529 -30.13555 -29.01299 -27.70270 -27.08993 -26.86900 -24.79337 -23.19763 -22.99604 -21.89872 -20.37684 -19.69610 -18.13602 -17.04308 -16.55034 -16.33140 -16.02868 -15.45758 -14.97879 -14.76763 -14.44072 -14.31625 -14.16954 -13.79066 -13.65424 -13.41870 -12.90911 -12.86167 -12.70033 -12.54667 -12.40533 -12.32836 -12.06771 -11.80084 -11.65827 -11.37765 -11.25387 -11.12549 -10.88719 -10.77959 -10.65516 -10.46455 -10.40499 -10.23494 -10.06932 -9.73797 -9.35827 -9.34400 -9.16418 -8.56456 -8.18781 -7.68212 -6.19467 -4.27338 0.66039 1.28926 2.26226 3.24851 3.30166 3.32728 3.81590 3.88744 4.11652 4.33519 4.53031 4.67467 4.75951 4.91224 4.99502 5.07261 5.13547 5.14341 5.15942 5.39474 5.43191 5.45397 5.50630 5.64040 5.73606 5.80761 5.83327 5.86737 5.90552 5.92627 6.00421 6.02210 6.04995 6.11913 6.25872 6.26910 6.35463 6.40099 6.59946 6.63530 6.69067 6.70097 6.77587 6.87785 7.15786 7.52341 7.75263 8.03146 8.08054 8.30120 8.77081 8.97432 9.40980 10.86895 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.008802 B = 0.004293 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.361498 B = 6521.370596 C = 9038.513422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.179 4.179 4 C 0.096 3.904 5 N -0.485 5.485 6 C 0.120 3.880 7 C -0.108 4.108 8 C -0.066 4.066 9 C -0.158 4.158 10 C 0.543 3.457 11 O -0.578 6.578 12 N -0.586 5.586 13 C 0.236 3.764 14 C -0.540 4.540 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.119 3.881 23 C -0.127 4.127 24 C -0.093 4.093 25 C -0.150 4.150 26 C -0.145 4.145 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 5.618 4.317 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.060 4.060 5 N -0.194 5.194 6 C -0.038 4.038 7 C -0.110 4.110 8 C -0.087 4.087 9 C -0.179 4.179 10 C 0.333 3.667 11 O -0.461 6.461 12 N -0.314 5.314 13 C 0.116 3.884 14 C -0.578 4.578 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.528 5.528 18 Si 0.722 3.278 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.004 4.004 23 C -0.166 4.166 24 C -0.112 4.112 25 C -0.207 4.207 26 C -0.202 4.202 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.947 5.577 4.358 11.408 hybrid contribution -0.185 -0.005 -1.019 1.036 sum -9.132 5.572 3.339 11.207 Atomic orbital electron populations 1.20876 0.90224 1.03560 1.03037 1.20479 0.96660 0.92187 0.94674 1.21909 0.95608 0.98317 1.04100 1.22821 0.91648 0.96426 0.95148 1.67678 1.41079 0.98373 1.12252 1.23351 0.91051 0.96529 0.92823 1.19958 0.94613 0.93518 1.02925 1.22053 0.99894 0.89748 0.96980 1.23416 1.01815 0.92207 1.00428 1.18202 0.86588 0.84979 0.76934 1.90691 1.13882 1.88233 1.53310 1.48145 1.09508 1.04441 1.69286 1.19493 0.72597 0.98701 0.97595 1.21451 0.91845 1.52341 0.92197 0.92140 1.24916 0.96598 0.94651 0.97438 1.69903 1.02531 1.49370 1.30960 0.86598 0.77676 0.78858 0.84648 1.20037 1.21075 1.20146 1.21375 0.97616 0.85379 0.96045 1.21989 1.00537 0.96024 0.98023 1.21044 0.98750 0.94989 0.96453 1.21905 0.99545 0.97806 1.01438 1.21822 1.01212 1.00702 0.96463 0.90352 0.91079 0.90362 0.84946 0.82995 0.81601 0.84882 0.83976 0.94364 0.94422 0.92373 0.91137 0.90194 0.91751 0.92043 0.91353 0.92587 0.93258 0.92089 0.92928 0.93075 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.60 36.00 0.35 -0.84 16 2 C -0.03 -0.41 5.96 -103.84 -0.62 -1.03 16 3 C -0.18 -2.02 9.80 -39.51 -0.39 -2.41 16 4 C 0.10 1.21 11.17 -17.45 -0.19 1.01 16 5 N -0.49 -7.74 10.34 -12.83 -0.13 -7.87 16 6 C 0.12 1.96 10.59 -17.04 -0.18 1.78 16 7 C -0.11 -1.64 5.88 -104.91 -0.62 -2.26 16 8 C -0.07 -1.08 8.94 -37.15 -0.33 -1.42 16 9 C -0.16 -2.98 8.62 -37.51 -0.32 -3.31 16 10 C 0.54 11.36 7.61 -12.97 -0.10 11.27 16 11 O -0.58 -12.83 15.81 5.20 0.08 -12.75 16 12 N -0.59 -12.23 2.46 -176.70 -0.43 -12.66 16 13 C 0.24 5.48 4.87 -5.19 -0.03 5.45 16 14 C -0.54 -13.82 9.39 -34.44 -0.32 -14.14 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 18 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.12 2.18 5.16 -4.05 -0.02 2.16 16 23 C -0.13 -2.01 5.01 -26.73 -0.13 -2.14 16 24 C -0.09 -1.22 2.92 -90.62 -0.26 -1.48 16 25 C -0.15 -1.87 8.95 37.16 0.33 -1.54 16 26 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.08 0.82 6.46 -51.93 -0.34 0.48 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.17 2.81 6.19 -52.48 -0.32 2.49 16 33 H 0.13 2.10 5.95 -52.49 -0.31 1.79 16 34 H 0.14 2.77 4.25 -52.49 -0.22 2.54 16 35 H 0.04 0.91 6.09 -51.93 -0.32 0.59 16 36 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.07 1.31 7.42 -51.93 -0.39 0.93 16 39 H 0.08 1.46 6.50 -51.93 -0.34 1.12 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.71 8.14 -51.94 -0.42 0.29 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -29.36 392.98 -9.06 -38.42 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.61 Total: 5.31 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.60 Total: -8.54 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.17 Total: -43.93 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.36 -9.06 -38.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492528607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.535 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds