Wall clock time and date at job start Tue Mar 31 2020 12:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47102 * 2 1 4 4 C 1.38362 * 119.84734 * 90.00105 * 3 2 1 5 5 C 1.37957 * 120.14080 * 179.97438 * 4 3 2 6 6 C 1.39580 * 119.85482 * 0.02971 * 5 4 3 7 7 C 1.47846 * 120.14779 * 179.97438 * 6 5 4 8 8 O 1.21550 * 119.99863 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46691 * 274.72265 * 10 9 7 12 12 C 1.53004 * 109.47406 * 299.99403 * 11 10 9 13 13 C 1.52993 * 109.47226 * 300.00825 * 12 11 10 14 14 N 1.46495 * 109.47228 * 179.97438 * 13 12 11 15 15 C 1.36947 * 119.99958 * 84.99549 * 14 13 12 16 16 H 1.07994 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99731 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99426 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00329 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46984 * 89.99881 * 19 17 15 21 21 H 1.48501 * 109.47117 * 210.00297 * 19 17 15 22 22 H 1.48500 * 109.47068 * 330.00130 * 19 17 15 23 23 C 1.52997 * 109.47602 * 59.99295 * 13 12 11 24 24 C 1.52993 * 109.47100 * 154.71955 * 10 9 7 25 25 C 1.39576 * 119.71015 * 0.24283 * 6 5 4 26 26 C 1.37964 * 119.85287 * 359.47793 * 25 6 5 27 27 H 1.08999 * 109.46994 * 300.00001 * 1 2 3 28 28 H 1.09006 * 109.47085 * 59.99688 * 1 2 3 29 29 H 1.08992 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47090 * 240.00737 * 2 1 3 31 31 H 1.08995 * 109.47482 * 120.00124 * 2 1 3 32 32 H 1.07997 * 119.93242 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.07907 * 179.97438 * 5 4 3 34 34 H 0.97005 * 120.00161 * 359.71831 * 9 7 6 35 35 H 1.08999 * 109.47194 * 34.71875 * 10 9 7 36 36 H 1.08995 * 109.47574 * 60.00208 * 11 10 9 37 37 H 1.09002 * 109.46832 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47149 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46655 * 60.00467 * 12 11 10 40 40 H 1.09002 * 109.47012 * 299.99424 * 13 12 11 41 41 H 0.97004 * 120.00120 * 264.99752 * 14 13 12 42 42 H 0.97004 * 119.99574 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.47574 * 179.97438 * 23 13 12 44 44 H 1.09002 * 109.46832 * 60.00019 * 23 13 12 45 45 H 1.09002 * 109.47012 * 179.97438 * 24 10 9 46 46 H 1.08996 * 109.47599 * 300.00068 * 24 10 9 47 47 H 1.08002 * 120.07917 * 179.72880 * 25 6 5 48 48 H 1.07994 * 119.93165 * 180.27520 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0701 1.2001 5 6 2.7222 3.3706 1.2072 6 6 2.9558 4.0316 0.0002 7 6 3.4486 5.4255 0.0002 8 8 3.6508 5.9986 1.0529 9 7 3.6736 6.0607 -1.1670 10 6 4.1614 7.4421 -1.1669 11 6 2.9756 8.4016 -1.0490 12 6 2.0317 8.1942 -2.2352 13 6 2.7830 8.4697 -3.5391 14 7 1.8794 8.2705 -4.6749 15 6 1.0604 9.2886 -5.0850 16 1 1.0810 10.2384 -4.5715 17 6 0.2039 9.0996 -6.1609 18 7 -0.5829 10.0782 -6.5554 19 14 0.1688 7.4569 -7.0497 20 1 -0.8376 6.5706 -6.4120 21 1 -0.1926 7.6723 -8.4738 22 1 1.5089 6.8221 -6.9697 23 6 3.9689 7.5102 -3.6571 24 6 4.9128 7.7177 -2.4709 25 6 2.7167 3.3727 -1.2069 26 6 2.2619 2.0702 -1.2000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.0811 1.5575 2.1333 33 1 2.9007 3.8765 2.1445 34 1 3.5161 5.6019 -2.0071 35 1 4.8338 7.5900 -0.3219 36 1 2.4403 8.2053 -0.1200 37 1 3.3385 9.4294 -1.0485 38 1 1.1871 8.8780 -2.1514 39 1 1.6687 7.1663 -2.2352 40 1 3.1459 9.4975 -3.5391 41 1 1.8612 7.4175 -5.1364 42 1 -1.1812 9.9463 -7.3075 43 1 4.5039 7.7062 -4.5862 44 1 3.6060 6.4824 -3.6571 45 1 5.2753 8.7456 -2.4710 46 1 5.7576 7.0341 -2.5549 47 1 2.8912 3.8800 -2.1442 48 1 2.0807 1.5578 -2.1331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026601021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:03 Heat of formation + Delta-G solvation = -21.200383 kcal Electronic energy + Delta-G solvation = -26387.247289 eV Core-core repulsion = 22827.126913 eV Total energy + Delta-G solvation = -3560.120376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.55472 -39.24670 -37.84668 -34.83016 -34.44399 -32.83006 -31.34977 -30.94506 -30.52861 -29.80689 -27.95094 -24.91772 -23.45975 -22.86542 -22.40502 -22.14190 -20.91542 -20.55118 -19.02116 -18.23442 -17.52050 -16.20407 -15.82932 -15.48762 -15.16144 -15.14295 -14.97222 -14.33986 -14.12882 -14.00801 -13.78363 -13.63291 -13.55618 -13.40297 -12.94371 -12.70175 -12.63239 -12.34255 -12.08883 -11.95035 -11.83391 -11.60897 -11.38804 -11.27288 -11.13574 -10.98196 -10.92228 -10.47966 -10.25285 -10.07060 -9.93305 -9.78601 -9.58591 -9.24439 -9.10604 -8.91965 -8.82214 -7.27252 -5.77711 -3.13033 0.63671 1.12698 2.76345 3.15275 3.34534 3.36970 3.43132 3.68071 4.34609 4.45047 4.57445 4.62092 4.72068 4.80372 4.89002 4.96782 4.98445 5.00754 5.09838 5.17078 5.23793 5.43872 5.48819 5.51458 5.53588 5.57307 5.62269 5.64904 5.74831 5.78231 5.81275 5.85944 5.92054 5.96114 6.05366 6.12052 6.15712 6.26146 6.27860 6.37693 6.40895 6.53417 6.63429 6.69121 6.88626 7.03222 7.50536 7.99325 8.19933 8.41599 9.20180 9.92711 10.12414 11.40860 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.003556 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.511239 B = 7871.977748 C = 9635.201026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.060 4.060 4 C -0.128 4.128 5 C -0.058 4.058 6 C -0.137 4.137 7 C 0.558 3.442 8 O -0.543 6.543 9 N -0.713 5.713 10 C 0.147 3.853 11 C -0.128 4.128 12 C -0.132 4.132 13 C 0.182 3.818 14 N -0.749 5.749 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.278 1.278 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.081 4.081 26 C -0.125 4.125 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.399 0.601 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.359 0.641 42 H 0.259 0.741 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.126 0.874 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 -19.090 13.759 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.060 4.060 4 C -0.146 4.146 5 C -0.076 4.076 6 C -0.140 4.140 7 C 0.345 3.655 8 O -0.421 6.421 9 N -0.365 5.365 10 C 0.043 3.957 11 C -0.168 4.168 12 C -0.173 4.173 13 C 0.073 3.927 14 N -0.391 5.391 15 C -0.371 4.371 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.167 4.167 24 C -0.161 4.161 25 C -0.100 4.100 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.236 0.764 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.144 0.856 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.421 -18.410 14.437 25.221 hybrid contribution -0.373 -1.315 -1.224 1.835 sum 9.047 -19.726 13.213 25.407 Atomic orbital electron populations 1.21757 0.94338 1.01909 1.02568 1.20615 0.96485 0.92365 1.03099 1.20137 0.96449 0.96252 0.93177 1.21014 1.01027 0.94777 0.97788 1.21260 0.94740 0.93875 0.97768 1.19997 1.05056 0.94510 0.94438 1.18258 0.77446 0.85764 0.84004 1.90747 1.52325 1.67838 1.31206 1.46071 1.67246 1.14897 1.08294 1.21015 0.95787 0.80355 0.98521 1.21922 0.96670 0.98811 0.99351 1.22176 0.98750 1.01497 0.94853 1.20203 0.88490 0.97091 0.86912 1.42788 1.46987 1.14094 1.35259 1.19085 1.13144 0.93613 1.11252 0.89222 1.24676 0.98765 0.97112 0.98699 1.69702 1.27664 1.31358 1.29546 0.86550 0.77464 0.84955 0.79547 1.21194 1.21799 1.20392 1.21859 0.97274 0.99708 0.97826 1.21794 0.97785 1.02815 0.93669 1.21339 0.96767 0.94763 0.97131 1.20990 1.00710 0.94725 0.97907 0.92397 0.92297 0.92229 0.90763 0.90811 0.85488 0.84680 0.76409 0.89688 0.92093 0.91129 0.91601 0.93002 0.92598 0.80845 0.93096 0.91308 0.92979 0.90040 0.91690 0.85591 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.06 -0.52 5.14 -104.53 -0.54 -1.05 16 4 C -0.13 -1.16 9.68 -39.64 -0.38 -1.55 16 5 C -0.06 -0.64 9.60 -39.18 -0.38 -1.01 16 6 C -0.14 -1.65 5.87 -104.97 -0.62 -2.26 16 7 C 0.56 7.78 7.74 -12.33 -0.10 7.69 16 8 O -0.54 -9.18 16.01 5.32 0.09 -9.09 16 9 N -0.71 -8.86 4.18 -54.75 -0.23 -9.09 16 10 C 0.15 1.87 2.79 -67.93 -0.19 1.68 16 11 C -0.13 -1.86 5.61 -26.73 -0.15 -2.01 16 12 C -0.13 -2.27 5.34 -26.73 -0.14 -2.41 16 13 C 0.18 3.30 2.77 -67.94 -0.19 3.11 16 14 N -0.75 -17.09 4.92 -53.43 -0.26 -17.35 16 15 C -0.24 -6.68 10.41 -15.05 -0.16 -6.84 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 19 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 23 C -0.13 -1.79 5.22 -26.73 -0.14 -1.93 16 24 C -0.12 -1.40 5.61 -26.73 -0.15 -1.55 16 25 C -0.08 -0.84 9.54 -39.18 -0.37 -1.21 16 26 C -0.13 -1.15 9.68 -39.64 -0.38 -1.53 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.14 1.49 7.65 -52.49 -0.40 1.09 16 34 H 0.40 4.41 4.90 -40.82 -0.20 4.21 16 35 H 0.09 1.11 7.57 -51.93 -0.39 0.72 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.89 7.60 -51.93 -0.39 0.50 16 40 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 41 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.68 6.51 -51.93 -0.34 0.34 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.13 1.12 6.41 -52.49 -0.34 0.78 16 48 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -33.05 380.30 -10.19 -43.24 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.80 Total: 10.16 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -3.78 Total: -12.20 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.28 Total: -54.94 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.05 -10.19 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026601021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.042 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds