Wall clock time and date at job start Tue Mar 31 2020 11:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46964 * 2 1 4 4 C 1.53003 * 109.46994 * 185.24015 * 3 2 1 5 5 C 1.52997 * 109.47077 * 65.24131 * 3 2 1 6 6 N 1.46498 * 109.46837 * 305.23764 * 3 2 1 7 7 C 1.46502 * 119.99890 * 117.85765 * 6 3 2 8 8 C 1.50695 * 109.47141 * 265.55589 * 7 6 3 9 9 H 1.08000 * 120.00193 * 1.68451 * 8 7 6 10 10 C 1.37883 * 120.00014 * 181.68545 * 8 7 6 11 11 N 1.31513 * 119.99911 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00152 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47041 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47252 * 119.99630 * 12 10 8 15 15 H 1.48494 * 109.47448 * 240.00217 * 12 10 8 16 16 C 1.34774 * 120.00378 * 297.85775 * 6 3 2 17 17 O 1.21690 * 120.00134 * 184.06064 * 16 6 3 18 18 C 1.46431 * 120.00050 * 4.06037 * 16 6 3 19 19 C 1.34795 * 120.00330 * 173.75850 * 18 16 6 20 20 C 1.47213 * 120.00335 * 180.02562 * 19 18 16 21 21 C 1.39838 * 120.58331 * 359.97438 * 20 19 18 22 22 N 1.31628 * 120.52400 * 180.02562 * 21 20 19 23 23 C 1.31967 * 121.90530 * 0.02562 * 22 21 20 24 24 C 1.38344 * 121.14041 * 359.97438 * 23 22 21 25 25 C 1.38330 * 119.33522 * 359.76296 * 24 23 22 26 26 C 1.50706 * 120.86802 * 180.25695 * 25 24 23 27 27 H 1.09001 * 109.46724 * 72.39684 * 1 2 3 28 28 H 1.09006 * 109.46978 * 192.39480 * 1 2 3 29 29 H 1.08996 * 109.47233 * 312.39609 * 1 2 3 30 30 H 1.08993 * 109.47430 * 239.99883 * 2 1 3 31 31 H 1.09002 * 109.46758 * 119.99546 * 2 1 3 32 32 H 1.09000 * 109.47060 * 188.70494 * 4 3 2 33 33 H 1.09001 * 109.47276 * 308.70837 * 4 3 2 34 34 H 1.09000 * 109.47146 * 68.70163 * 4 3 2 35 35 H 1.08998 * 109.47039 * 299.99692 * 5 3 2 36 36 H 1.08990 * 109.47290 * 60.00131 * 5 3 2 37 37 H 1.09002 * 109.46708 * 180.02562 * 5 3 2 38 38 H 1.09004 * 109.47164 * 25.55830 * 7 6 3 39 39 H 1.08995 * 109.46957 * 145.55247 * 7 6 3 40 40 H 0.97001 * 120.00208 * 179.97438 * 11 10 8 41 41 H 1.08005 * 119.99547 * 353.75885 * 18 16 6 42 42 H 1.07999 * 119.99993 * 359.97438 * 19 18 16 43 43 H 1.08003 * 119.73413 * 359.97438 * 21 20 19 44 44 H 1.08003 * 119.43250 * 180.02562 * 23 22 21 45 45 H 1.08007 * 120.33034 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47170 * 270.24863 * 26 25 24 47 47 H 1.09005 * 109.47207 * 30.24897 * 26 25 24 48 48 H 1.09000 * 109.47131 * 150.24613 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5643 1.4446 -0.1317 5 6 1.6404 2.1247 1.3099 6 7 1.4514 2.1685 -1.1281 7 6 0.5871 3.3259 -0.8836 8 6 -0.8532 2.8827 -0.8673 9 1 -1.0985 1.8389 -0.9963 10 6 -1.8578 3.8099 -0.6877 11 7 -1.5590 5.0809 -0.5301 12 14 -3.6431 3.2607 -0.6681 13 1 -3.7108 1.7903 -0.8645 14 1 -4.2554 3.6139 0.6379 15 1 -4.3823 3.9411 -1.7616 16 6 1.7049 1.7717 -2.3909 17 8 1.2771 2.4178 -3.3292 18 6 2.4954 0.5633 -2.6339 19 6 2.6435 0.0959 -3.8896 20 6 3.4376 -1.1194 -4.1338 21 6 4.0441 -1.7982 -3.0723 22 7 4.7544 -2.8844 -3.2921 23 6 4.9235 -3.3734 -4.5061 24 6 4.3566 -2.7610 -5.6094 25 6 3.5957 -1.6191 -5.4344 26 6 2.9574 -0.9273 -6.6113 27 1 -0.3633 0.3108 -0.9796 28 1 -0.3633 -1.0038 0.2206 29 1 -0.3633 0.6929 0.7589 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.9410 2.4557 0.0228 33 1 3.9946 0.7783 0.6160 34 1 3.8434 1.1011 -1.1279 35 1 0.5545 2.1233 1.4037 36 1 2.0784 1.5846 2.1491 37 1 2.0034 3.1525 1.3096 38 1 0.8409 3.7722 0.0779 39 1 0.7321 4.0612 -1.6750 40 1 -2.2658 5.7333 -0.4041 41 1 2.9597 0.0464 -1.8070 42 1 2.1789 0.6125 -4.7164 43 1 3.9295 -1.4278 -2.0643 44 1 5.5140 -4.2677 -4.6405 45 1 4.5031 -3.1727 -6.5971 46 1 3.6466 -0.1851 -7.0140 47 1 2.7239 -1.6621 -7.3819 48 1 2.0401 -0.4344 -6.2894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276235607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:23 Heat of formation + Delta-G solvation = 27.504136 kcal Electronic energy + Delta-G solvation = -27460.802306 eV Core-core repulsion = 23902.793916 eV Total energy + Delta-G solvation = -3558.008389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.48094 -39.76913 -36.81547 -34.90391 -33.71301 -32.95120 -31.65853 -30.25601 -30.01529 -28.37867 -27.62622 -26.31248 -24.68105 -23.09579 -22.96060 -22.07653 -21.25371 -19.70767 -18.20104 -16.78666 -16.73850 -16.43659 -15.76909 -15.42792 -14.88931 -14.55579 -14.50267 -14.35804 -14.15116 -13.95142 -13.47922 -13.27058 -13.04345 -12.87269 -12.79051 -12.69020 -12.28899 -12.21907 -11.92657 -11.71945 -11.58140 -11.39471 -11.13757 -11.06516 -10.88667 -10.68749 -10.53616 -10.43405 -10.37905 -10.01941 -9.79149 -9.58355 -9.57207 -9.33415 -8.97471 -8.38249 -8.35976 -7.55133 -6.00335 -4.03062 0.43369 1.05212 2.10046 3.30440 3.38828 3.41703 3.65517 3.85097 4.07132 4.23965 4.46640 4.49953 4.53527 4.65828 4.78796 5.00939 5.13536 5.21029 5.25072 5.29858 5.34441 5.35724 5.39672 5.47401 5.63818 5.65766 5.69939 5.85213 5.86834 5.90594 6.03358 6.04346 6.13649 6.17722 6.28074 6.35664 6.44147 6.47231 6.56110 6.57103 6.59349 6.81531 7.07934 7.17006 7.52339 7.63908 7.79345 7.98918 8.29212 8.47601 8.96492 9.14001 9.61322 11.07864 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.003822 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.507064 B = 7324.721445 C = 8026.029359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.165 3.835 4 C -0.177 4.177 5 C -0.149 4.149 6 N -0.576 5.576 7 C 0.239 3.761 8 C -0.523 4.523 9 H 0.070 0.930 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.537 3.463 17 O -0.543 6.543 18 C -0.187 4.187 19 C -0.064 4.064 20 C -0.107 4.107 21 C 0.111 3.889 22 N -0.487 5.487 23 C 0.097 3.903 24 C -0.175 4.175 25 C -0.027 4.027 26 C -0.124 4.124 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.261 0.739 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.135 0.865 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.615 -14.573 -4.241 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.079 3.921 4 C -0.234 4.234 5 C -0.206 4.206 6 N -0.307 5.307 7 C 0.120 3.880 8 C -0.561 4.561 9 H 0.088 0.912 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.211 1.211 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.207 4.207 19 C -0.084 4.084 20 C -0.110 4.110 21 C -0.046 4.046 22 N -0.195 5.195 23 C -0.059 4.059 24 C -0.195 4.195 25 C -0.035 4.035 26 C -0.181 4.181 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.174 0.826 44 H 0.172 0.828 45 H 0.153 0.847 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.674 -14.446 -3.954 19.621 hybrid contribution -1.418 0.160 -0.609 1.552 sum 11.256 -14.286 -4.563 18.751 Atomic orbital electron populations 1.21975 0.94387 1.00200 1.04231 1.22293 0.98117 0.95736 1.01619 1.20376 0.91621 0.91916 0.88225 1.22670 0.95601 1.02755 1.02395 1.22103 1.04191 1.00152 0.94173 1.48227 1.47428 1.31498 1.03565 1.19405 0.88081 0.82678 0.97796 1.21741 0.90761 0.94839 1.48805 0.91154 1.24918 0.98911 0.94787 0.95471 1.69945 1.32720 1.00980 1.49864 0.86556 0.85280 0.78824 0.77468 1.19784 1.21116 1.21057 1.17970 0.80943 0.84955 0.83634 1.90774 1.53128 1.56189 1.42207 1.24022 1.00706 0.98146 0.97799 1.22159 0.95350 0.92793 0.98119 1.19975 1.00135 0.97048 0.93792 1.23090 0.92026 0.90541 0.98976 1.67620 1.15500 1.11992 1.24422 1.22805 0.96664 0.98772 0.87701 1.21967 0.99874 0.96918 1.00714 1.20535 0.94375 0.94078 0.94511 1.20924 1.01452 1.00696 0.94984 0.91410 0.94376 0.91052 0.91597 0.91689 0.91980 0.91733 0.91507 0.89685 0.92704 0.91952 0.94040 0.94293 0.92967 0.83992 0.84472 0.82550 0.82816 0.84704 0.90097 0.90888 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.21 37.16 0.31 -2.26 16 2 C -0.14 -2.02 4.62 -26.73 -0.12 -2.14 16 3 C 0.16 2.63 0.73 -131.82 -0.10 2.53 16 4 C -0.18 -2.32 8.19 37.16 0.30 -2.01 16 5 C -0.15 -2.38 6.93 37.16 0.26 -2.13 16 6 N -0.58 -11.78 1.71 -161.80 -0.28 -12.06 16 7 C 0.24 6.00 4.50 -5.19 -0.02 5.98 16 8 C -0.52 -14.04 8.30 -34.44 -0.29 -14.33 16 9 H 0.07 1.86 4.62 -52.49 -0.24 1.62 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 12 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 16 C 0.54 11.16 7.09 -12.96 -0.09 11.07 16 17 O -0.54 -13.63 15.88 5.20 0.08 -13.54 16 18 C -0.19 -2.94 6.03 -37.51 -0.23 -3.16 16 19 C -0.06 -0.92 8.94 -37.16 -0.33 -1.25 16 20 C -0.11 -1.34 5.88 -104.91 -0.62 -1.96 16 21 C 0.11 1.36 10.59 -17.04 -0.18 1.18 16 22 N -0.49 -5.92 10.34 -12.83 -0.13 -6.06 16 23 C 0.10 0.95 11.17 -17.45 -0.19 0.75 16 24 C -0.17 -1.59 9.80 -39.51 -0.39 -1.98 16 25 C -0.03 -0.29 5.96 -103.84 -0.62 -0.91 16 26 C -0.12 -1.10 9.60 36.01 0.35 -0.76 16 27 H 0.07 1.36 5.95 -51.93 -0.31 1.05 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.30 5.73 -51.93 -0.30 1.00 16 30 H 0.07 0.90 4.65 -51.93 -0.24 0.66 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.07 0.86 4.57 -51.93 -0.24 0.62 16 35 H 0.08 1.57 5.58 -51.93 -0.29 1.28 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.04 7.02 -51.93 -0.36 0.68 16 38 H 0.04 1.04 5.53 -51.93 -0.29 0.75 16 39 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.14 1.88 1.56 -52.48 -0.08 1.80 16 42 H 0.14 2.09 5.96 -52.49 -0.31 1.78 16 43 H 0.16 1.70 6.19 -52.48 -0.32 1.37 16 44 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 48 H 0.08 0.80 6.46 -51.93 -0.34 0.46 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.48 366.76 -7.80 -40.28 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.65 Total: 4.49 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.06 Total: -9.80 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.33 Total: -43.50 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.48 -7.80 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276235607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.786 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds